Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
	#0 3vud_A.cif

H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
TYR 5.A OH     TYR 20.A O     no hydrogen  2.846  N/A
VAL 7.A N      PHE 14.A O     no hydrogen  2.772  N/A
ILE 9.A N      SER 12.A O     no hydrogen  3.084  N/A
SER 12.A N     ILE 9.A O      no hydrogen  2.783  N/A
THR 13.A OG1   GLU 8.A OE1    no hydrogen  3.279  N/A
THR 13.A OG1   GLU 8.A OE2    no hydrogen  3.130  N/A
PHE 14.A N     VAL 7.A O      no hydrogen  3.232  N/A
THR 15.A N     TYR 99.A OH    no hydrogen  2.945  N/A
VAL 16.A N     TYR 5.A O      no hydrogen  2.762  N/A
LYS 18.A NZ    ASN 2.A O      no hydrogen  2.476  N/A
ARG 19.A NE    ASP 39.A OD1   no hydrogen  3.292  N/A
ARG 19.A NH2   ASP 39.A OD1   no hydrogen  2.999  N/A
ARG 19.A NH2   ASP 39.A OD2   no hydrogen  2.871  N/A
TYR 20.A N     LEU 17.A O     no hydrogen  2.576  N/A
TYR 20.A OH    ASN 84.A OD1   no hydrogen  2.442  N/A
GLN 21.A N     TYR 38.A O     no hydrogen  2.847  N/A
ILE 26.A N     VAL 34.A O     no hydrogen  3.222  N/A
SER 28.A OG    GLY 29.A O     no hydrogen  3.264  N/A
SER 28.A OG    GLY 32.A O     no hydrogen  3.261  N/A
GLY 29.A N     GLY 32.A O     no hydrogen  2.688  N/A
ALA 30.A N     ASP 163.A OD2  no hydrogen  2.858  N/A
VAL 34.A N     GLY 27.A O     no hydrogen  2.755  N/A
CYS 35.A N     ILE 48.A O     no hydrogen  2.626  N/A
CYS 35.A SG    LYS 24.A O     no hydrogen  3.011  N/A
ALA 37.A N     VAL 46.A O     no hydrogen  3.160  N/A
TYR 38.A N     GLN 21.A O     no hydrogen  2.723  N/A
ASP 39.A N     ARG 44.A O     no hydrogen  3.077  N/A
ALA 40.A N     ARG 19.A O     no hydrogen  2.468  N/A
LEU 42.A N     ASP 39.A OD1   no hydrogen  3.361  N/A
VAL 46.A N     ALA 37.A O     no hydrogen  2.992  N/A
ALA 47.A N     MET 102.A O    no hydrogen  2.842  N/A
ILE 48.A N     CYS 35.A O     no hydrogen  2.450  N/A
LYS 49.A N     ILE 100.A O    no hydrogen  2.886  N/A
LYS 49.A NZ    GLN 31.A OE1   no hydrogen  2.829  N/A
LYS 49.A NZ    GLU 67.A OE1   no hydrogen  2.706  N/A
LYS 49.A NZ    GLU 67.A OE2   no hydrogen  3.216  N/A
LYS 49.A NZ    ASP 163.A OD2  no hydrogen  2.907  N/A
LYS 50.A N     ILE 33.A O     no hydrogen  2.813  N/A
LYS 50.A NZ    THR 13.A O     no hydrogen  3.431  N/A
LYS 50.A NZ    SER 52.A OG    no hydrogen  2.717  N/A
LEU 51.A N     VAL 98.A O     no hydrogen  3.036  N/A
ARG 53.A N     ASP 97.A OD1   no hydrogen  3.158  N/A
ARG 53.A NH1   GLN 96.A OE1   no hydrogen  2.720  N/A
GLN 56.A N     ARG 53.A O     no hydrogen  2.873  N/A
ALA 61.A N     ASN 57.A O     no hydrogen  2.591  N/A
ARG 63.A N     THR 59.A O     no hydrogen  3.078  N/A
ALA 64.A N     ALA 61.A O     no hydrogen  3.117  N/A
TYR 65.A N     ALA 61.A O     no hydrogen  2.977  N/A
ARG 66.A N     LYS 62.A O     no hydrogen  3.083  N/A
ARG 66.A NH1   GLY 165.A O    no hydrogen  3.402  N/A
ARG 66.A NH2   ASP 334.A O    no hydrogen  2.637  N/A
LEU 68.A N     ALA 64.A O     no hydrogen  2.987  N/A
VAL 69.A N     TYR 65.A O     no hydrogen  2.963  N/A
LEU 70.A N     ARG 66.A O     no hydrogen  2.768  N/A
MET 71.A N     GLU 67.A O     no hydrogen  2.576  N/A
LYS 72.A N     LEU 68.A O     no hydrogen  3.017  N/A
CYS 73.A N     VAL 69.A O     no hydrogen  2.975  N/A
CYS 73.A SG    VAL 69.A O     no hydrogen  2.850  N/A
CYS 73.A SG    LEU 70.A O     no hydrogen  3.435  N/A
VAL 74.A N     LEU 70.A O     no hydrogen  2.846  N/A
ASN 75.A N     HIS 135.A NE2  no hydrogen  3.361  N/A
LYS 77.A NZ    GLU 320.A OE2  no hydrogen  3.396  N/A
ASN 78.A ND2   LYS 77.A O     no hydrogen  2.640  N/A
ASN 78.A ND2   GLN 128.A OE1  no hydrogen  3.513  N/A
ILE 79.A N     HIS 76.A O     no hydrogen  2.880  N/A
ILE 80.A N     ILE 161.A O    no hydrogen  2.874  N/A
LEU 83.A N     VAL 101.A O    no hydrogen  2.564  N/A
PHE 86.A N     TYR 99.A O     no hydrogen  3.117  N/A
THR 87.A OG1   ASP 97.A O     no hydrogen  3.059  N/A
PHE 95.A N     SER 91.A O     no hydrogen  2.662  N/A
PHE 95.A N     LEU 92.A O     no hydrogen  3.332  N/A
GLN 96.A N     GLN 89.A OE1   no hydrogen  2.726  N/A
ASP 97.A N     GLN 89.A OE1   no hydrogen  2.756  N/A
VAL 98.A N     LEU 51.A O     no hydrogen  3.298  N/A
TYR 99.A N     PHE 86.A O     no hydrogen  2.961  N/A
ILE 100.A N    LYS 49.A O     no hydrogen  2.923  N/A
VAL 101.A N    ASN 84.A O     no hydrogen  2.727  N/A
MET 102.A N    ALA 47.A O     no hydrogen  2.928  N/A
GLU 103.A N    GLY 81.A O     no hydrogen  3.091  N/A
ALA 107.A N    VAL 153.A O    no hydrogen  3.095  N/A
LEU 109.A N    ILE 151.A O    no hydrogen  3.074  N/A
GLN 111.A N    ASN 108.A O    no hydrogen  3.301  N/A
GLN 111.A NE2  GLN 111.A O    no hydrogen  3.320  N/A
VAL 112.A N    LEU 109.A O    no hydrogen  2.309  N/A
ILE 113.A N    LEU 109.A O    no hydrogen  3.266  N/A
HIS 119.A NE2  PRO 272.A O    no hydrogen  2.968  N/A
ARG 121.A N    ASP 118.A OD2  no hydrogen  2.536  N/A
ARG 121.A NE   ASP 118.A OD1  no hydrogen  2.819  N/A
MET 122.A N    ASP 118.A O    no hydrogen  3.012  N/A
SER 123.A N    HIS 119.A O    no hydrogen  2.649  N/A
SER 123.A OG   TYR 311.A O    no hydrogen  2.855  N/A
TYR 124.A N    GLU 120.A O    no hydrogen  2.698  N/A
LEU 125.A N    ARG 121.A O    no hydrogen  2.914  N/A
LEU 126.A N    MET 122.A O    no hydrogen  3.000  N/A
TYR 127.A N    SER 123.A O    no hydrogen  2.566  N/A
TYR 127.A OH   GLU 320.A OE1  no hydrogen  2.949  N/A
GLN 128.A N    TYR 124.A O    no hydrogen  2.820  N/A
GLN 128.A NE2  CYS 157.A O    no hydrogen  3.043  N/A
MET 129.A N    LEU 125.A O    no hydrogen  2.872  N/A
LEU 130.A N    LEU 126.A O    no hydrogen  3.010  N/A
CYS 131.A N    TYR 127.A O    no hydrogen  3.188  N/A
CYS 131.A SG   TYR 127.A O    no hydrogen  3.336  N/A
GLY 132.A N    GLN 128.A O    no hydrogen  3.041  N/A
GLY 132.A N    MET 129.A O    no hydrogen  3.083  N/A
ILE 133.A N    MET 129.A O    no hydrogen  3.002  N/A
LYS 134.A N    LEU 130.A O    no hydrogen  2.516  N/A
LYS 134.A NZ   ASP 304.A OD1  no hydrogen  3.421  N/A
HIS 135.A N    CYS 131.A O    no hydrogen  3.223  N/A
HIS 137.A N    ILE 133.A O    no hydrogen  3.188  N/A
HIS 137.A NE2  ASP 198.A OD2  no hydrogen  3.106  N/A
SER 138.A N    LYS 134.A O    no hydrogen  2.722  N/A
SER 138.A OG   HIS 135.A O    no hydrogen  2.526  N/A
ALA 139.A N    LEU 136.A O    no hydrogen  2.853  N/A
GLY 140.A N    HIS 137.A O    no hydrogen  2.584  N/A
ILE 141.A N    LEU 136.A O    no hydrogen  2.677  N/A
ILE 142.A N    ARG 168.A O    no hydrogen  2.483  N/A
HIS 143.A N    ASP 198.A OD2  no hydrogen  2.962  N/A
ARG 144.A N    ASP 198.A OD1  no hydrogen  3.222  N/A
ARG 144.A NE   LEU 166.A O    no hydrogen  3.081  N/A
ARG 144.A NH1  THR 174.A OG1  no hydrogen  3.405  N/A
ARG 144.A NH2  THR 174.A OG1  no hydrogen  3.420  N/A
ASN 150.A N    LYS 147.A O    no hydrogen  2.725  N/A
ASN 150.A ND2  ASP 145.A O    no hydrogen  2.547  N/A
ILE 151.A N    PRO 148.A O    no hydrogen  2.656  N/A
VAL 152.A N    LYS 160.A O    no hydrogen  2.905  N/A
VAL 153.A N    ALA 107.A O    no hydrogen  2.979  N/A
LYS 154.A N    THR 158.A O    no hydrogen  2.937  N/A
CYS 157.A N    LYS 154.A O    no hydrogen  2.440  N/A
THR 158.A N    ASP 156.A OD1  no hydrogen  2.778  N/A
THR 158.A OG1  ASP 156.A OD1  no hydrogen  2.071  N/A
LYS 160.A N    VAL 152.A O    no hydrogen  2.601  N/A
ILE 161.A N    ASN 78.A O     no hydrogen  2.704  N/A
GLY 165.A N    ASP 163.A OD1  no hydrogen  2.952  N/A
ARG 168.A N    ILE 142.A O    no hydrogen  2.892  N/A
ARG 168.A NE   THR 169.A O    no hydrogen  2.987  N/A
THR 169.A N    ASP 334.A OD1  no hydrogen  2.628  N/A
THR 169.A N    ASP 334.A OD2  no hydrogen  3.223  N/A
THR 169.A OG1  ASP 334.A OD1  no hydrogen  3.478  N/A
THR 169.A OG1  ASP 334.A OD2  no hydrogen  2.918  N/A
GLY 171.A N    TYR 193.A O    no hydrogen  3.373  N/A
THR 179.A N    ASP 145.A OD1  no hydrogen  3.017  N/A
THR 179.A OG1  ASP 145.A OD1  no hydrogen  2.780  N/A
ARG 180.A NE   GLY 218.A O    no hydrogen  3.292  N/A
TYR 182.A N    THR 179.A O    no hydrogen  3.326  N/A
TYR 182.A OH   GLU 208.A OE1  no hydrogen  3.120  N/A
TYR 182.A OH   GLU 208.A OE2  no hydrogen  3.059  N/A
ARG 183.A N    ARG 180.A O    no hydrogen  3.412  N/A
GLU 186.A N    GLU 186.A OE1  no hydrogen  2.785  N/A
VAL 187.A N    ALA 184.A O    no hydrogen  2.562  N/A
ILE 188.A N    ALA 184.A O    no hydrogen  2.895  N/A
LEU 189.A N    PRO 185.A O    no hydrogen  2.838  N/A
MET 191.A N    GLU 186.A O    no hydrogen  3.117  N/A
GLY 192.A N    GLU 186.A O    no hydrogen  3.278  N/A
GLU 195.A N    GLU 195.A OE1  no hydrogen  2.370  N/A
ASN 196.A ND2  ALA 297.A O    no hydrogen  2.965  N/A
VAL 197.A N    LYS 194.A O    no hydrogen  2.743  N/A
ASP 198.A N    GLU 195.A O    no hydrogen  3.339  N/A
TRP 200.A N    VAL 197.A O    no hydrogen  2.812  N/A
SER 201.A OG   ASP 198.A O    no hydrogen  3.353  N/A
VAL 202.A N    ASP 198.A O    no hydrogen  3.249  N/A
GLY 203.A N    ILE 199.A O    no hydrogen  2.951  N/A
CYS 204.A N    TRP 200.A O    no hydrogen  2.954  N/A
CYS 204.A SG   TRP 200.A O    no hydrogen  3.519  N/A
ILE 205.A N    SER 201.A O    no hydrogen  2.590  N/A
MET 206.A N    VAL 202.A O    no hydrogen  2.653  N/A
GLY 207.A N    GLY 203.A O    no hydrogen  2.542  N/A
GLU 208.A N    CYS 204.A O    no hydrogen  2.560  N/A
MET 209.A N    ILE 205.A O    no hydrogen  2.861  N/A
ILE 210.A N    MET 206.A O    no hydrogen  2.789  N/A
LYS 211.A N    GLY 207.A O    no hydrogen  2.494  N/A
LYS 211.A NZ   LEU 265.A O    no hydrogen  2.663  N/A
GLY 212.A N    GLU 208.A O    no hydrogen  2.758  N/A
THR 219.A N    ASP 223.A OD2  no hydrogen  2.565  N/A
THR 219.A OG1  ASP 223.A OD2  no hydrogen  2.616  N/A
ASP 223.A N    ASP 220.A OD1  no hydrogen  2.484  N/A
GLN 224.A N    ASP 220.A O    no hydrogen  3.045  N/A
ASN 226.A ND2  ASP 223.A OD1  no hydrogen  2.793  N/A
LYS 227.A N    ASP 223.A O    no hydrogen  3.304  N/A
LYS 227.A NZ   ASP 223.A OD1  no hydrogen  3.215  N/A
VAL 228.A N    GLN 224.A O    no hydrogen  3.173  N/A
ILE 229.A N    TRP 225.A O    no hydrogen  3.186  N/A
GLU 230.A N    ASN 226.A O    no hydrogen  2.456  N/A
GLN 231.A N    LYS 227.A O    no hydrogen  3.324  N/A
LEU 232.A N    VAL 228.A O    no hydrogen  2.632  N/A
GLY 233.A N    ILE 229.A O    no hydrogen  2.788  N/A
THR 234.A N    TYR 257.A O    no hydrogen  3.263  N/A
THR 234.A OG1  PRO 255.A O    no hydrogen  3.456  N/A
PHE 239.A N    SER 236.A OG   no hydrogen  2.837  N/A
MET 240.A N    SER 236.A O    no hydrogen  2.901  N/A
LYS 241.A N    PRO 237.A O    no hydrogen  2.998  N/A
LYS 242.A N    PHE 239.A O    no hydrogen  2.749  N/A
VAL 247.A N    GLN 244.A O    no hydrogen  2.678  N/A
ARG 248.A N    GLN 244.A O    no hydrogen  2.735  N/A
THR 249.A N    PRO 245.A O    no hydrogen  2.919  N/A
THR 249.A OG1  PRO 245.A O    no hydrogen  2.471  N/A
THR 249.A OG1  THR 246.A O    no hydrogen  3.076  N/A
VAL 251.A N    VAL 247.A O    no hydrogen  3.314  N/A
GLU 252.A N    ARG 248.A O    no hydrogen  2.663  N/A
ASN 253.A N    THR 249.A O    no hydrogen  3.165  N/A
ARG 254.A N    TYR 250.A O    no hydrogen  2.796  N/A
ARG 254.A NE   TYR 250.A OH   no hydrogen  2.852  N/A
LYS 256.A NZ   GLU 252.A O    no hydrogen  2.662  N/A
TYR 260.A N    GLN 231.A O    no hydrogen  2.898  N/A
LYS 264.A N    SER 261.A OG   no hydrogen  3.389  N/A
LEU 265.A N    SER 261.A O    no hydrogen  2.730  N/A
PHE 266.A N    PHE 262.A O    no hydrogen  2.513  N/A
LEU 270.A N    PRO 267.A O    no hydrogen  3.236  N/A
SER 275.A OG   ASN 278.A O    no hydrogen  2.893  N/A
SER 275.A OG   LEU 280.A O    no hydrogen  2.996  N/A
LEU 280.A N    ASN 278.A O    no hydrogen  2.327  N/A
ALA 282.A N    ASP 274.A OD1  no hydrogen  3.199  N/A
GLN 284.A N    LYS 281.A O    no hydrogen  3.219  N/A
ALA 285.A N    LYS 281.A O    no hydrogen  3.304  N/A
ARG 286.A N    ALA 282.A O    no hydrogen  2.990  N/A
ARG 286.A NE   PHE 266.A O    no hydrogen  2.823  N/A
ARG 286.A NH2  PHE 266.A O    no hydrogen  3.147  N/A
ARG 286.A NH2  ASP 268.A OD2  no hydrogen  3.096  N/A
ASP 287.A N    SER 283.A O    no hydrogen  2.716  N/A
LEU 288.A N    GLN 284.A O    no hydrogen  2.744  N/A
LEU 289.A N    ALA 285.A O    no hydrogen  2.697  N/A
SER 290.A N    ARG 286.A O    no hydrogen  2.599  N/A
SER 290.A OG   ASP 287.A O    no hydrogen  2.294  N/A
LYS 291.A N    LEU 288.A O    no hydrogen  2.408  N/A
LYS 291.A NZ   ASP 287.A OD2  no hydrogen  3.100  N/A
MET 292.A N    LEU 288.A O    no hydrogen  3.209  N/A
MET 292.A N    LEU 289.A O    no hydrogen  2.856  N/A
LEU 293.A N    LEU 289.A O    no hydrogen  2.666  N/A
VAL 294.A N    MET 292.A O    no hydrogen  2.904  N/A
SER 298.A N    ASP 296.A OD1  no hydrogen  2.914  N/A
SER 298.A OG   ASP 296.A OD1  no hydrogen  3.350  N/A
ARG 300.A NE   VAL 294.A O    no hydrogen  3.199  N/A
ARG 300.A NH2  GLU 186.A OE1  no hydrogen  3.020  N/A
ARG 300.A NH2  GLU 186.A OE2  no hydrogen  3.547  N/A
ILE 301.A N    LYS 291.A O    no hydrogen  3.075  N/A
SER 302.A N    GLU 305.A OE1  no hydrogen  2.465  N/A
SER 302.A OG   ASP 304.A OD2  no hydrogen  3.130  N/A
GLU 305.A N    SER 302.A OG   no hydrogen  2.706  N/A
LEU 307.A N    VAL 303.A O    no hydrogen  2.507  N/A
GLN 308.A N    ASP 304.A O    no hydrogen  3.089  N/A
HIS 309.A N    GLU 305.A O    no hydrogen  2.931  N/A
TYR 311.A OH   HIS 119.A O    no hydrogen  3.317  N/A
ILE 312.A N    HIS 309.A O    no hydrogen  2.746  N/A
ASN 313.A N    HIS 309.A O    no hydrogen  2.986  N/A
TRP 315.A N    ILE 312.A O    no hydrogen  3.190  N/A
TRP 315.A NE1  SER 123.A OG   no hydrogen  2.853  N/A
TYR 316.A N    ASN 313.A O    no hydrogen  2.721  N/A
TYR 316.A OH   GLU 322.A OE1  no hydrogen  2.375  N/A
ASP 317.A N    TYR 127.A OH   no hydrogen  2.968  N/A
SER 319.A N    ASP 317.A OD1  no hydrogen  2.769  N/A
SER 319.A OG   ASP 317.A OD1  no hydrogen  2.386  N/A
GLU 320.A N    ASP 317.A O    no hydrogen  2.446  N/A
ALA 321.A N    ASP 317.A O    no hydrogen  2.801  N/A
GLU 322.A N    PRO 318.A O    no hydrogen  2.660  N/A
LYS 331.A NZ   LYS 331.A O    no hydrogen  2.995  N/A
GLN 332.A N    PRO 329.A O    no hydrogen  3.210  N/A
GLU 335.A N    LEU 333.A O    no hydrogen  2.746  N/A
ARG 336.A N    GLU 335.A OE2  no hydrogen  2.711  N/A
HIS 338.A ND1  GLU 342.A OE2  no hydrogen  2.901  N/A
TRP 343.A N    THR 339.A O    no hydrogen  3.490  N/A
LYS 344.A NZ   LEU 92.A O     no hydrogen  2.601  N/A
LYS 344.A NZ   GLU 93.A O     no hydrogen  3.409  N/A
GLU 345.A N    GLU 341.A O    no hydrogen  3.400  N/A
LEU 346.A N    GLU 342.A O    no hydrogen  3.217  N/A
ILE 347.A N    TRP 343.A O    no hydrogen  3.109  N/A
TYR 348.A N    LYS 344.A O    no hydrogen  3.272  N/A
LYS 349.A N    GLU 345.A O    no hydrogen  2.571  N/A
GLU 350.A N    LEU 346.A O    no hydrogen  2.491  N/A
VAL 351.A N    ILE 347.A O    no hydrogen  2.424  N/A
MET 352.A N    TYR 348.A O    no hydrogen  2.767  N/A
MET 352.A N    LYS 349.A O    no hydrogen  2.917  N/A
ASP 353.A N    LYS 349.A O    no hydrogen  3.447  N/A
GLU 355.A N    VAL 351.A O    no hydrogen  2.913  N/A