1ALIA

Alkaline phosphatase mutant (h412n)
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQENTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase (phosphoric monoester)
molecule keywords ALKALINE PHOSPHATASE
publication title Escherichia coli alkaline phosphatase: X-ray structural studies of a mutant enzyme (His-412-->Asn) at one of the catalytically important zinc binding sites.
pubmed rcsb
source organism Escherichia coli
total genus 162
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1aliA00
1ED8A 2GSOA 1ELXA 1AUKA 4UOOA 1FSUA 3NKMA 2W8SA 2ZKTA 3A52A 3NKPA 4GTWA 2W5WA 5KXAA 1EJJA 3IGZB 2GLQA 2IUCA 4GTYA 5EGEA 3MK2A 1URAA 1HDHA 4GTXA 3UNYA 3BDFA 4ZG9A 4MY4A 5LQQA 1ALJA 2RH6A 2XRGA 3T00A 3MK1A 1KH7A 1E2SP 1ELZA 1K7HA 4LR2A 3UO0A 4LQYA 4N7TA 3BDGB 1ZEBA 1EI6A 3IGYB 1Y6VA 3M8YA 4YR1A 1EW8A 1AJDA 4LRBA 4CXSA 3SZZA 1KHJA 1KHLA 3WAWA 3E2DA 1ZEFA 5L0BA 4FDJA 3NKOA 5IJQA 4KJGA 1KH9A 4B56A 1E3CP 2VQRA 5DLWA 1AJAA 4ZG7A 3DYCA 3T01A 1ALHA 1KHKA 5LIAA 3NKNA 1O99A 4UOPA 1KHNA 4CXUA 4UORA 4CXKA 3IDDA 4LRAA 2QZUA 5LRNA 3MK0A 4MIVA 5C66A 3LXQA 1URBA 2GSUA 1ELYA 3BDGA 3T02A 5LRMA 4UPIA 1ALIA 1O98A 5IJSA 4ZGAA 2W5QA 4KM4A 3M8ZA 3WAYA 3B5QA 4TN0A 1ZEDA 4KAVA 4NWJA 3TG0A 1E1ZP 1EW2A 1KH5A 1SHNA 3WAVA 1ANIA 4GTZA 3OT9A 5TJ3A 4MHXA 4CYSA 4LRDA 1AJBA 3BDHA 4UPHA 2XR9A 4KAYA 1ED9A 4FDIA 2GSNA 4ZG6A 5INHA 3NKRA 4LR9A 1EQJA 4LREA 4LR7A 3M7VA 3WAXA 1B8JA 2W5VA 1KH4A 1EW9A 4KJDA 5GRRA 3SZYA 2G9YA 4LRFA 4LR8A 2W5TA 4CYRA 1HJKA 2ANHA 4NWXA 5EGHA 3TWZA 3UN3A 2IUCB 2W5XA 3CMRA 4QAXA 2D1GA 5K4PA 1AJCA 3WBHA 5L0EA 5DLTA 2IFYA 3UN2A 4LRCA 3M8WA 1E33P 1P49A 2W5RA 2GA3A 2W5SA 1HQAA 3DPCA 1ANJA 3NVLA 5GOVA 3ED4A 4UPKA 3Q3QA 5HRTA 1N2KA 1SHQA 1ALKA 1N2LA 5L0KA 1Y7AA 4UPLA 3TX0A 3NKQA 3KD8A 2W8DA 5AJ9A 5DLVA 3UN5A 2X98A
chains in the Genus database with same CATH superfamily
1ED8A 2GSOA 1ELXA 1AUKA 4UOOA 1FSUA 3NKMA 2W8SA 2ZKTA 3A52A 3NKPA 4GTWA 2W5WA 5KXAA 1EJJA 3IGZB 2GLQA 2IUCA 4GTYA 5EGEA 3MK2A 1URAA 1HDHA 4GTXA 3UNYA 3BDFA 4ZG9A 4MY4A 5LQQA 1ALJA 2RH6A 2XRGA 3T00A 3MK1A 1KH7A 1E2SP 1ELZA 1K7HA 4LR2A 3UO0A 4LQYA 4N7TA 3BDGB 1ZEBA 1EI6A 3IGYB 1Y6VA 3M8YA 4YR1A 1EW8A 1AJDA 4LRBA 4CXSA 3SZZA 1KHJA 1KHLA 3WAWA 3E2DA 1ZEFA 5L0BA 4FDJA 3NKOA 5IJQA 4KJGA 1KH9A 4B56A 1E3CP 2VQRA 5DLWA 1AJAA 4ZG7A 3DYCA 3T01A 1ALHA 1KHKA 5LIAA 3NKNA 1O99A 4UOPA 1KHNA 4CXUA 4UORA 4CXKA 3IDDA 4LRAA 2QZUA 5LRNA 3MK0A 4MIVA 5C66A 3LXQA 1URBA 2GSUA 1ELYA 3BDGA 3T02A 5LRMA 4UPIA 1ALIA 1O98A 5IJSA 4ZGAA 2W5QA 4KM4A 3M8ZA 3WAYA 3B5QA 4TN0A 1ZEDA 4KAVA 4NWJA 3TG0A 1E1ZP 1EW2A 1KH5A 1SHNA 3WAVA 1ANIA 4GTZA 3OT9A 5TJ3A 4MHXA 4CYSA 4LRDA 1AJBA 3BDHA 4UPHA 2XR9A 4KAYA 1ED9A 4FDIA 2GSNA 4ZG6A 5INHA 3NKRA 4LR9A 1EQJA 4LREA 4LR7A 3M7VA 3WAXA 1B8JA 2W5VA 1KH4A 1EW9A 4KJDA 5GRRA 3SZYA 2G9YA 4LRFA 4LR8A 2W5TA 4CYRA 1HJKA 2ANHA 4NWXA 5EGHA 3TWZA 3UN3A 2IUCB 2W5XA 3CMRA 4QAXA 2D1GA 5K4PA 1AJCA 3WBHA 5L0EA 5DLTA 2IFYA 3UN2A 4LRCA 3M8WA 1E33P 1P49A 2W5RA 2GA3A 2W5SA 1HQAA 3DPCA 1ANJA 3NVLA 5GOVA 3ED4A 4UPKA 3Q3QA 5HRTA 1N2KA 1SHQA 1ALKA 1N2LA 5L0KA 1Y7AA 4UPLA 3TX0A 3NKQA 3KD8A 2W8DA 5AJ9A 5DLVA 3UN5A 2X98A
chains in the Genus database with same CATH topology
1ED8A 2GSOA 1ELXA 1AUKA 4UOOA 1FSUA 3NKMA 2W8SA 2ZKTA 3A52A 3NKPA 4GTWA 2W5WA 5KXAA 1EJJA 3IGZB 2GLQA 2IUCA 4GTYA 5EGEA 3MK2A 1URAA 1HDHA 4GTXA 3UNYA 3BDFA 4ZG9A 4MY4A 5LQQA 1ALJA 2RH6A 2XRGA 3T00A 3MK1A 1KH7A 1E2SP 1ELZA 1K7HA 4LR2A 3UO0A 4LQYA 4N7TA 3BDGB 1ZEBA 1EI6A 3IGYB 1Y6VA 3M8YA 4YR1A 1EW8A 1AJDA 4LRBA 4CXSA 3SZZA 1KHJA 1KHLA 3WAWA 3E2DA 1ZEFA 5L0BA 4FDJA 3NKOA 5IJQA 4KJGA 1KH9A 4B56A 1E3CP 2VQRA 5DLWA 1AJAA 4ZG7A 3DYCA 3T01A 1ALHA 1KHKA 5LIAA 3NKNA 1O99A 4UOPA 1KHNA 4CXUA 4UORA 4CXKA 3IDDA 4LRAA 2QZUA 5LRNA 3MK0A 4MIVA 5C66A 3LXQA 1URBA 2GSUA 1ELYA 3BDGA 3T02A 5LRMA 4UPIA 1ALIA 1O98A 5IJSA 4ZGAA 2W5QA 4KM4A 3M8ZA 3WAYA 3B5QA 4TN0A 1ZEDA 4KAVA 4NWJA 3TG0A 1E1ZP 1EW2A 1KH5A 1SHNA 3WAVA 1ANIA 4GTZA 3OT9A 5TJ3A 4MHXA 4CYSA 4LRDA 1AJBA 3BDHA 4UPHA 2XR9A 4KAYA 1ED9A 4FDIA 2GSNA 4ZG6A 5INHA 3NKRA 4LR9A 1EQJA 4LREA 4LR7A 3M7VA 3WAXA 1B8JA 2W5VA 1KH4A 1EW9A 4KJDA 5GRRA 3SZYA 2G9YA 4LRFA 4LR8A 2W5TA 4CYRA 1HJKA 2ANHA 4NWXA 5EGHA 3TWZA 3UN3A 2IUCB 2W5XA 3CMRA 4QAXA 2D1GA 5K4PA 1AJCA 3WBHA 5L0EA 5DLTA 2IFYA 3UN2A 4LRCA 3M8WA 1E33P 1P49A 2W5RA 2GA3A 2W5SA 1HQAA 3DPCA 1ANJA 3NVLA 5GOVA 3ED4A 4UPKA 3Q3QA 5HRTA 1N2KA 1SHQA 1ALKA 1N2LA 5L0KA 1Y7AA 4UPLA 3TX0A 3NKQA 3KD8A 2W8DA 5AJ9A 5DLVA 3UN5A 2X98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ED8 A;  2GSO A;  1ELX A;  1AUK A;  4UOO A;  1FSU A;  3NKM A;  2W8S A;  2ZKT A;  3A52 A;  3NKP A;  4GTW A;  2W5W A;  5KXA A;  1EJJ A;  3IGZ B;  2GLQ A;  2IUC A;  4GTY A;  5EGE A;  3MK2 A;  1URA A;  1HDH A;  4GTX A;  3UNY A;  3BDF A;  4ZG9 A;  4MY4 A;  5LQQ A;  1ALJ A;  2RH6 A;  2XRG A;  3T00 A;  3MK1 A;  1KH7 A;  1E2S P;  1ELZ A;  1K7H A;  4LR2 A;  3UO0 A;  4LQY A;  4N7T A;  3BDG B;  1ZEB A;  1EI6 A;  3IGY B;  1Y6V A;  3M8Y A;  4YR1 A;  1EW8 A;  1AJD A;  4LRB A;  4CXS A;  3SZZ A;  1KHJ A;  1KHL A;  3WAW A;  3E2D A;  1ZEF A;  5L0B A;  4FDJ A;  3NKO A;  5IJQ A;  4KJG A;  1KH9 A;  4B56 A;  1E3C P;  2VQR A;  5DLW A;  1AJA A;  4ZG7 A;  3DYC A;  3T01 A;  1ALH A;  1KHK A;  5LIA A;  3NKN A;  1O99 A;  4UOP A;  1KHN A;  4CXU A;  4UOR A;  4CXK A;  3IDD A;  4LRA A;  2QZU A;  5LRN A;  3MK0 A;  4MIV A;  5C66 A;  3LXQ A;  1URB A;  2GSU A;  1ELY A;  3BDG A;  3T02 A;  5LRM A;  4UPI A;  1ALI A;  1O98 A;  5IJS A;  4ZGA A;  2W5Q A;  4KM4 A;  3M8Z A;  3WAY A;  3B5Q A;  4TN0 A;  1ZED A;  4KAV A;  4NWJ A;  3TG0 A;  1E1Z P;  1EW2 A;  1KH5 A;  1SHN A;  3WAV A;  1ANI A;  4GTZ A;  3OT9 A;  5TJ3 A;  4MHX A;  4CYS A;  4LRD A;  1AJB A;  3BDH A;  4UPH A;  2XR9 A;  4KAY A;  1ED9 A;  4FDI A;  2GSN A;  4ZG6 A;  5INH A;  3NKR A;  4LR9 A;  1EQJ A;  4LRE A;  4LR7 A;  3M7V A;  3WAX A;  1B8J A;  2W5V A;  1KH4 A;  1EW9 A;  4KJD A;  5GRR A;  3SZY A;  2G9Y A;  4LRF A;  4LR8 A;  2W5T A;  4CYR A;  1HJK A;  2ANH A;  4NWX A;  5EGH A;  3TWZ A;  3UN3 A;  2IUC B;  2W5X A;  3CMR A;  4QAX A;  2D1G A;  5K4P A;  1AJC A;  3WBH A;  5L0E A;  5DLT A;  2IFY A;  3UN2 A;  4LRC A;  3M8W A;  1E33 P;  1P49 A;  2W5R A;  2GA3 A;  2W5S A;  1HQA A;  3DPC A;  1ANJ A;  3NVL A;  5GOV A;  3ED4 A;  4UPK A;  3Q3Q A;  5HRT A;  1N2K A;  1SHQ A;  1ALK A;  1N2L A;  5L0K A;  1Y7A A;  4UPL A;  3TX0 A;  3NKQ A;  3KD8 A;  2W8D A;  5AJ9 A;  5DLV A;  3UN5 A;  2X98 A; 
#chains in the Genus database with same CATH topology
 1ED8 A;  2GSO A;  1ELX A;  1AUK A;  4UOO A;  1FSU A;  3NKM A;  2W8S A;  2ZKT A;  3A52 A;  3NKP A;  4GTW A;  2W5W A;  5KXA A;  1EJJ A;  3IGZ B;  2GLQ A;  2IUC A;  4GTY A;  5EGE A;  3MK2 A;  1URA A;  1HDH A;  4GTX A;  3UNY A;  3BDF A;  4ZG9 A;  4MY4 A;  5LQQ A;  1ALJ A;  2RH6 A;  2XRG A;  3T00 A;  3MK1 A;  1KH7 A;  1E2S P;  1ELZ A;  1K7H A;  4LR2 A;  3UO0 A;  4LQY A;  4N7T A;  3BDG B;  1ZEB A;  1EI6 A;  3IGY B;  1Y6V A;  3M8Y A;  4YR1 A;  1EW8 A;  1AJD A;  4LRB A;  4CXS A;  3SZZ A;  1KHJ A;  1KHL A;  3WAW A;  3E2D A;  1ZEF A;  5L0B A;  4FDJ A;  3NKO A;  5IJQ A;  4KJG A;  1KH9 A;  4B56 A;  1E3C P;  2VQR A;  5DLW A;  1AJA A;  4ZG7 A;  3DYC A;  3T01 A;  1ALH A;  1KHK A;  5LIA A;  3NKN A;  1O99 A;  4UOP A;  1KHN A;  4CXU A;  4UOR A;  4CXK A;  3IDD A;  4LRA A;  2QZU A;  5LRN A;  3MK0 A;  4MIV A;  5C66 A;  3LXQ A;  1URB A;  2GSU A;  1ELY A;  3BDG A;  3T02 A;  5LRM A;  4UPI A;  1ALI A;  1O98 A;  5IJS A;  4ZGA A;  2W5Q A;  4KM4 A;  3M8Z A;  3WAY A;  3B5Q A;  4TN0 A;  1ZED A;  4KAV A;  4NWJ A;  3TG0 A;  1E1Z P;  1EW2 A;  1KH5 A;  1SHN A;  3WAV A;  1ANI A;  4GTZ A;  3OT9 A;  5TJ3 A;  4MHX A;  4CYS A;  4LRD A;  1AJB A;  3BDH A;  4UPH A;  2XR9 A;  4KAY A;  1ED9 A;  4FDI A;  2GSN A;  4ZG6 A;  5INH A;  3NKR A;  4LR9 A;  1EQJ A;  4LRE A;  4LR7 A;  3M7V A;  3WAX A;  1B8J A;  2W5V A;  1KH4 A;  1EW9 A;  4KJD A;  5GRR A;  3SZY A;  2G9Y A;  4LRF A;  4LR8 A;  2W5T A;  4CYR A;  1HJK A;  2ANH A;  4NWX A;  5EGH A;  3TWZ A;  3UN3 A;  2IUC B;  2W5X A;  3CMR A;  4QAX A;  2D1G A;  5K4P A;  1AJC A;  3WBH A;  5L0E A;  5DLT A;  2IFY A;  3UN2 A;  4LRC A;  3M8W A;  1E33 P;  1P49 A;  2W5R A;  2GA3 A;  2W5S A;  1HQA A;  3DPC A;  1ANJ A;  3NVL A;  5GOV A;  3ED4 A;  4UPK A;  3Q3Q A;  5HRT A;  1N2K A;  1SHQ A;  1ALK A;  1N2L A;  5L0K A;  1Y7A A;  4UPL A;  3TX0 A;  3NKQ A;  3KD8 A;  2W8D A;  5AJ9 A;  5DLV A;  3UN5 A;  2X98 A; 
#chains in the Genus database with same CATH homology
 1ED8 A;  2GSO A;  1ELX A;  1AUK A;  4UOO A;  1FSU A;  3NKM A;  2W8S A;  2ZKT A;  3A52 A;  3NKP A;  4GTW A;  2W5W A;  5KXA A;  1EJJ A;  3IGZ B;  2GLQ A;  2IUC A;  4GTY A;  5EGE A;  3MK2 A;  1URA A;  1HDH A;  4GTX A;  3UNY A;  3BDF A;  4ZG9 A;  4MY4 A;  5LQQ A;  1ALJ A;  2RH6 A;  2XRG A;  3T00 A;  3MK1 A;  1KH7 A;  1E2S P;  1ELZ A;  1K7H A;  4LR2 A;  3UO0 A;  4LQY A;  4N7T A;  3BDG B;  1ZEB A;  1EI6 A;  3IGY B;  1Y6V A;  3M8Y A;  4YR1 A;  1EW8 A;  1AJD A;  4LRB A;  4CXS A;  3SZZ A;  1KHJ A;  1KHL A;  3WAW A;  3E2D A;  1ZEF A;  5L0B A;  4FDJ A;  3NKO A;  5IJQ A;  4KJG A;  1KH9 A;  4B56 A;  1E3C P;  2VQR A;  5DLW A;  1AJA A;  4ZG7 A;  3DYC A;  3T01 A;  1ALH A;  1KHK A;  5LIA A;  3NKN A;  1O99 A;  4UOP A;  1KHN A;  4CXU A;  4UOR A;  4CXK A;  3IDD A;  4LRA A;  2QZU A;  5LRN A;  3MK0 A;  4MIV A;  5C66 A;  3LXQ A;  1URB A;  2GSU A;  1ELY A;  3BDG A;  3T02 A;  5LRM A;  4UPI A;  1ALI A;  1O98 A;  5IJS A;  4ZGA A;  2W5Q A;  4KM4 A;  3M8Z A;  3WAY A;  3B5Q A;  4TN0 A;  1ZED A;  4KAV A;  4NWJ A;  3TG0 A;  1E1Z P;  1EW2 A;  1KH5 A;  1SHN A;  3WAV A;  1ANI A;  4GTZ A;  3OT9 A;  5TJ3 A;  4MHX A;  4CYS A;  4LRD A;  1AJB A;  3BDH A;  4UPH A;  2XR9 A;  4KAY A;  1ED9 A;  4FDI A;  2GSN A;  4ZG6 A;  5INH A;  3NKR A;  4LR9 A;  1EQJ A;  4LRE A;  4LR7 A;  3M7V A;  3WAX A;  1B8J A;  2W5V A;  1KH4 A;  1EW9 A;  4KJD A;  5GRR A;  3SZY A;  2G9Y A;  4LRF A;  4LR8 A;  2W5T A;  4CYR A;  1HJK A;  2ANH A;  4NWX A;  5EGH A;  3TWZ A;  3UN3 A;  2IUC B;  2W5X A;  3CMR A;  4QAX A;  2D1G A;  5K4P A;  1AJC A;  3WBH A;  5L0E A;  5DLT A;  2IFY A;  3UN2 A;  4LRC A;  3M8W A;  1E33 P;  1P49 A;  2W5R A;  2GA3 A;  2W5S A;  1HQA A;  3DPC A;  1ANJ A;  3NVL A;  5GOV A;  3ED4 A;  4UPK A;  3Q3Q A;  5HRT A;  1N2K A;  1SHQ A;  1ALK A;  1N2L A;  5L0K A;  1Y7A A;  4UPL A;  3TX0 A;  3NKQ A;  3KD8 A;  2W8D A;  5AJ9 A;  5DLV A;  3UN5 A;  2X98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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