1ANTI

Biological implications of a 3 angstroms structure of dimeric antithrombin
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
420
structure length
402
Chain Sequence
RDIPMNPMCIYRSPEKKATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEAASTAVVIAGRSLNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANPCVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Serine protease inhibitor
molecule keywords ANTITHROMBIN
publication title Biological implications of a 3 A structure of dimeric antithrombin.
pubmed doi rcsb
source organism Homo sapiens
total genus 98
structure length 402
sequence length 420
chains with identical sequence L
ec nomenclature
pdb deposition date 1994-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1antI01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1antI02
1JRRA 1C8OA 1DZGL 1HLEA 1HP7A 2ACHA 4DY7C 2VDYA 4GA7A 5INWA 1XQJA 1DVNA 2XN3A 1QMBA 2WXXA 1LK6I 1OO8A 1C5GA 1QMNA 1ANTI 4Y40A 1T1FA 5HGCA 2ARRA 4DY0A 1WZ9A 1IMVA 2PEEA 2PEFA 3LE2A 4PYWA 2D26A 3DRMA 1AZXI 3CVMA 2BEHL 2VDXA 1DZHL 2DUTA 1OC0A 1D5SA 3Q03A 3PB1I 5CE0A 1PSIA 1JVQI 1BR8I 4ZK0A 1ATTA 3OZQA 3B9FI 1OYHI 4AJUA 5C98A 1OVAA 1E03I 2B4XL 1JTIA 2V95A 2WXWA 4ROAA 1DB2A 3DRUA 2ARQA 2R9YA 1E05I 2WY0C 4C49A 2ANTI 9APIA 1DVMA 3CWMA 2WXZC 2XN5A 3EVJI 2CEOA 3F02A 4ROBA 2HIJI 4P0OA 3VVJA 5BRRI 4EB1I 3NE4A 4CAAA 5EI0A 1IZ2A 1JMJA 9PAIA 3T1PA 4RSQA 2OAYA 2WY1A 2H4QA 1AS4A 2RIVA 3Q02A 3NDDA 1OYHL 1F0CA 5CDZA 3DY0A 2WXYC 2RIWA 1NQ9I 1BY7A 3F1SA 1DZGI 2ZV6A 1SNGA 4IF8A 4AU3B 1YXAA 3NDFA 4G8RA 3CAAA 2B5TI 4AU4A 2HIJL 1LQ8A 2OL2A 4Y3KA 4P0FA 1EZXA 1MTPA 3PZFA 2ZNHA 4R9IA 4AFXA 1XQGA 3R4LA 2GD4C 1E04I 3KCGI 3CWLA 5IO1A 1JJOC 4ZK3A 3H5CA 3F5NA 3STOA 8APIA 1R1LI 1UHGA 1OPHA 2VH4A 4AU3A 2QUGA 3NDAA 1XU8A 4IC0A 1TB6I 3EOXA 4KDSA 2BEHI 3ZHAA 1JMOA 1DZHI 3UT3A 4AJTA 2WXZA 2XN7A 2HI9A 4G8OA 1B3KA 1ATHA 4BB2A 1M93B 1SEKA 4RO9A 1A7CA 4X30A 2H4RA 3DLWA 1LJ5A 4YIAA 3LW2A 4AQHA 1SR5A 4EB1L 2B4XI 3FGQA 7APIA 1OVAB 1QLPA 2XN6A 4DTEA 1OVAC 1KCTA 5CDXA 1K9OI 1ATUA 4C41A 2H4PA 4AU2A
chains in the Genus database with same CATH superfamily
1JRRA 1C8OA 1DZGL 1HLEA 1HP7A 2ACHA 4DY7C 2VDYA 4GA7A 5INWA 1XQJA 1DVNA 2XN3A 1QMBA 2WXXA 1LK6I 1OO8A 1C5GA 1QMNA 1ANTI 4Y40A 1T1FA 5HGCA 2ARRA 4DY0A 1WZ9A 1IMVA 2PEEA 2PEFA 3LE2A 4PYWA 2D26A 3DRMA 1AZXI 3CVMA 2BEHL 2VDXA 1DZHL 2DUTA 1OC0A 1D5SA 3Q03A 3PB1I 5CE0A 1PSIA 1JVQI 1BR8I 4ZK0A 1ATTA 3OZQA 3B9FI 1OYHI 4AJUA 5C98A 1OVAA 1E03I 2B4XL 1JTIA 2V95A 2WXWA 4ROAA 1DB2A 3DRUA 2ARQA 2R9YA 1E05I 2WY0C 4C49A 2ANTI 9APIA 1DVMA 3CWMA 2WXZC 2XN5A 3EVJI 2CEOA 3F02A 4ROBA 2HIJI 4P0OA 3VVJA 5BRRI 4EB1I 3NE4A 4CAAA 5EI0A 1IZ2A 1JMJA 9PAIA 3T1PA 4RSQA 2OAYA 2WY1A 2H4QA 1AS4A 2RIVA 3Q02A 3NDDA 1OYHL 1F0CA 5CDZA 3DY0A 2WXYC 2RIWA 1NQ9I 1BY7A 3F1SA 1DZGI 2ZV6A 1SNGA 4IF8A 4AU3B 1YXAA 3NDFA 4G8RA 3CAAA 2B5TI 4AU4A 2HIJL 1LQ8A 2OL2A 4Y3KA 4P0FA 1EZXA 1MTPA 3PZFA 2ZNHA 4R9IA 4AFXA 1XQGA 3R4LA 2GD4C 1E04I 3KCGI 3CWLA 5IO1A 1JJOC 4ZK3A 3H5CA 3F5NA 3STOA 8APIA 1R1LI 1UHGA 1OPHA 2VH4A 4AU3A 2QUGA 3NDAA 1XU8A 4IC0A 1TB6I 3EOXA 4KDSA 2BEHI 3ZHAA 1JMOA 1DZHI 3UT3A 4AJTA 2WXZA 2XN7A 2HI9A 4G8OA 1B3KA 1ATHA 4BB2A 1M93B 1SEKA 4RO9A 1A7CA 4X30A 2H4RA 3DLWA 1LJ5A 4YIAA 3LW2A 4AQHA 1SR5A 4EB1L 2B4XI 3FGQA 7APIA 1OVAB 1QLPA 2XN6A 4DTEA 1OVAC 1KCTA 5CDXA 1K9OI 1ATUA 4C41A 2H4PA 4AU2A
chains in the Genus database with same CATH topology
1JRRA 1C8OA 1DZGL 1HLEA 1HP7A 2ACHA 4DY7C 2VDYA 4GA7A 5INWA 1XQJA 1DVNA 2XN3A 1QMBA 2WXXA 1LK6I 1OO8A 1C5GA 1QMNA 1ANTI 4Y40A 1T1FA 5HGCA 2ARRA 4DY0A 1WZ9A 1IMVA 2PEEA 2PEFA 3LE2A 4PYWA 2D26A 3DRMA 1AZXI 3CVMA 2BEHL 2VDXA 1DZHL 2DUTA 1OC0A 1D5SA 3Q03A 3PB1I 5CE0A 1PSIA 1JVQI 1BR8I 4ZK0A 1ATTA 3OZQA 3B9FI 1OYHI 4AJUA 5C98A 1OVAA 1E03I 2B4XL 1JTIA 2V95A 2WXWA 4ROAA 1DB2A 3DRUA 2ARQA 2R9YA 1E05I 2WY0C 4C49A 2ANTI 9APIA 1DVMA 3CWMA 2WXZC 2XN5A 3EVJI 2CEOA 3F02A 4ROBA 2HIJI 4P0OA 3VVJA 5BRRI 4EB1I 3NE4A 4CAAA 5EI0A 1IZ2A 1JMJA 9PAIA 3T1PA 4RSQA 2OAYA 2WY1A 2H4QA 1AS4A 2RIVA 3Q02A 3NDDA 1OYHL 1F0CA 5CDZA 3DY0A 2WXYC 2RIWA 1NQ9I 1BY7A 3F1SA 1DZGI 2ZV6A 1SNGA 4IF8A 4AU3B 1YXAA 3NDFA 4G8RA 3CAAA 2B5TI 4AU4A 2HIJL 1LQ8A 2OL2A 4Y3KA 4P0FA 1EZXA 1MTPA 3PZFA 2ZNHA 4R9IA 4AFXA 1XQGA 3R4LA 2GD4C 1E04I 3KCGI 3CWLA 5IO1A 1JJOC 4ZK3A 3H5CA 3F5NA 3STOA 8APIA 1R1LI 1UHGA 1OPHA 2VH4A 4AU3A 2QUGA 3NDAA 1XU8A 4IC0A 1TB6I 3EOXA 4KDSA 2BEHI 3ZHAA 1JMOA 1DZHI 3UT3A 4AJTA 2WXZA 2XN7A 2HI9A 4G8OA 1B3KA 1ATHA 4BB2A 1M93B 1SEKA 4RO9A 1A7CA 4X30A 2H4RA 3DLWA 1LJ5A 4YIAA 3LW2A 4AQHA 1SR5A 4EB1L 2B4XI 3FGQA 7APIA 1OVAB 1QLPA 2XN6A 4DTEA 1OVAC 1KCTA 5CDXA 1K9OI 1ATUA 4C41A 2H4PA 4AU2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JRR A;  1C8O A;  1DZG L;  1HLE A;  1HP7 A;  2ACH A;  4DY7 C;  2VDY A;  4GA7 A;  5INW A;  1XQJ A;  1DVN A;  2XN3 A;  1QMB A;  2WXX A;  1LK6 I;  1OO8 A;  1C5G A;  1QMN A;  1ANT I;  4Y40 A;  1T1F A;  5HGC A;  2ARR A;  4DY0 A;  1WZ9 A;  1IMV A;  2PEE A;  2PEF A;  3LE2 A;  4PYW A;  2D26 A;  3DRM A;  1AZX I;  3CVM A;  2BEH L;  2VDX A;  1DZH L;  2DUT A;  1OC0 A;  1D5S A;  3Q03 A;  3PB1 I;  5CE0 A;  1PSI A;  1JVQ I;  1BR8 I;  4ZK0 A;  1ATT A;  3OZQ A;  3B9F I;  1OYH I;  4AJU A;  5C98 A;  1OVA A;  1E03 I;  2B4X L;  1JTI A;  2V95 A;  2WXW A;  4ROA A;  1DB2 A;  3DRU A;  2ARQ A;  2R9Y A;  1E05 I;  2WY0 C;  4C49 A;  2ANT I;  9API A;  1DVM A;  3CWM A;  2WXZ C;  2XN5 A;  3EVJ I;  2CEO A;  3F02 A;  4ROB A;  2HIJ I;  4P0O A;  3VVJ A;  5BRR I;  4EB1 I;  3NE4 A;  4CAA A;  5EI0 A;  1IZ2 A;  1JMJ A;  9PAI A;  3T1P A;  4RSQ A;  2OAY A;  2WY1 A;  2H4Q A;  1AS4 A;  2RIV A;  3Q02 A;  3NDD A;  1OYH L;  1F0C A;  5CDZ A;  3DY0 A;  2WXY C;  2RIW A;  1NQ9 I;  1BY7 A;  3F1S A;  1DZG I;  2ZV6 A;  1SNG A;  4IF8 A;  4AU3 B;  1YXA A;  3NDF A;  4G8R A;  3CAA A;  2B5T I;  4AU4 A;  2HIJ L;  1LQ8 A;  2OL2 A;  4Y3K A;  4P0F A;  1EZX A;  1MTP A;  3PZF A;  2ZNH A;  4R9I A;  4AFX A;  1XQG A;  3R4L A;  2GD4 C;  1E04 I;  3KCG I;  3CWL A;  5IO1 A;  1JJO C;  4ZK3 A;  3H5C A;  3F5N A;  3STO A;  8API A;  1R1L I;  1UHG A;  1OPH A;  2VH4 A;  4AU3 A;  2QUG A;  3NDA A;  1XU8 A;  4IC0 A;  1TB6 I;  3EOX A;  4KDS A;  2BEH I;  3ZHA A;  1JMO A;  1DZH I;  3UT3 A;  4AJT A;  2WXZ A;  2XN7 A;  2HI9 A;  4G8O A;  1B3K A;  1ATH A;  4BB2 A;  1M93 B;  1SEK A;  4RO9 A;  1A7C A;  4X30 A;  2H4R A;  3DLW A;  1LJ5 A;  4YIA A;  3LW2 A;  4AQH A;  1SR5 A;  4EB1 L;  2B4X I;  3FGQ A;  7API A;  1OVA B;  1QLP A;  2XN6 A;  4DTE A;  1OVA C;  1KCT A;  5CDX A;  1K9O I;  1ATU A;  4C41 A;  2H4P A;  4AU2 A; 
#chains in the Genus database with same CATH topology
 1JRR A;  1C8O A;  1DZG L;  1HLE A;  1HP7 A;  2ACH A;  4DY7 C;  2VDY A;  4GA7 A;  5INW A;  1XQJ A;  1DVN A;  2XN3 A;  1QMB A;  2WXX A;  1LK6 I;  1OO8 A;  1C5G A;  1QMN A;  1ANT I;  4Y40 A;  1T1F A;  5HGC A;  2ARR A;  4DY0 A;  1WZ9 A;  1IMV A;  2PEE A;  2PEF A;  3LE2 A;  4PYW A;  2D26 A;  3DRM A;  1AZX I;  3CVM A;  2BEH L;  2VDX A;  1DZH L;  2DUT A;  1OC0 A;  1D5S A;  3Q03 A;  3PB1 I;  5CE0 A;  1PSI A;  1JVQ I;  1BR8 I;  4ZK0 A;  1ATT A;  3OZQ A;  3B9F I;  1OYH I;  4AJU A;  5C98 A;  1OVA A;  1E03 I;  2B4X L;  1JTI A;  2V95 A;  2WXW A;  4ROA A;  1DB2 A;  3DRU A;  2ARQ A;  2R9Y A;  1E05 I;  2WY0 C;  4C49 A;  2ANT I;  9API A;  1DVM A;  3CWM A;  2WXZ C;  2XN5 A;  3EVJ I;  2CEO A;  3F02 A;  4ROB A;  2HIJ I;  4P0O A;  3VVJ A;  5BRR I;  4EB1 I;  3NE4 A;  4CAA A;  5EI0 A;  1IZ2 A;  1JMJ A;  9PAI A;  3T1P A;  4RSQ A;  2OAY A;  2WY1 A;  2H4Q A;  1AS4 A;  2RIV A;  3Q02 A;  3NDD A;  1OYH L;  1F0C A;  5CDZ A;  3DY0 A;  2WXY C;  2RIW A;  1NQ9 I;  1BY7 A;  3F1S A;  1DZG I;  2ZV6 A;  1SNG A;  4IF8 A;  4AU3 B;  1YXA A;  3NDF A;  4G8R A;  3CAA A;  2B5T I;  4AU4 A;  2HIJ L;  1LQ8 A;  2OL2 A;  4Y3K A;  4P0F A;  1EZX A;  1MTP A;  3PZF A;  2ZNH A;  4R9I A;  4AFX A;  1XQG A;  3R4L A;  2GD4 C;  1E04 I;  3KCG I;  3CWL A;  5IO1 A;  1JJO C;  4ZK3 A;  3H5C A;  3F5N A;  3STO A;  8API A;  1R1L I;  1UHG A;  1OPH A;  2VH4 A;  4AU3 A;  2QUG A;  3NDA A;  1XU8 A;  4IC0 A;  1TB6 I;  3EOX A;  4KDS A;  2BEH I;  3ZHA A;  1JMO A;  1DZH I;  3UT3 A;  4AJT A;  2WXZ A;  2XN7 A;  2HI9 A;  4G8O A;  1B3K A;  1ATH A;  4BB2 A;  1M93 B;  1SEK A;  4RO9 A;  1A7C A;  4X30 A;  2H4R A;  3DLW A;  1LJ5 A;  4YIA A;  3LW2 A;  4AQH A;  1SR5 A;  4EB1 L;  2B4X I;  3FGQ A;  7API A;  1OVA B;  1QLP A;  2XN6 A;  4DTE A;  1OVA C;  1KCT A;  5CDX A;  1K9O I;  1ATU A;  4C41 A;  2H4P A;  4AU2 A; 
#chains in the Genus database with same CATH homology
 1JRR A;  1C8O A;  1DZG L;  1HLE A;  1HP7 A;  2ACH A;  4DY7 C;  2VDY A;  4GA7 A;  5INW A;  1XQJ A;  1DVN A;  2XN3 A;  1QMB A;  2WXX A;  1LK6 I;  1OO8 A;  1C5G A;  1QMN A;  1ANT I;  4Y40 A;  1T1F A;  5HGC A;  2ARR A;  4DY0 A;  1WZ9 A;  1IMV A;  2PEE A;  2PEF A;  3LE2 A;  4PYW A;  2D26 A;  3DRM A;  1AZX I;  3CVM A;  2BEH L;  2VDX A;  1DZH L;  2DUT A;  1OC0 A;  1D5S A;  3Q03 A;  3PB1 I;  5CE0 A;  1PSI A;  1JVQ I;  1BR8 I;  4ZK0 A;  1ATT A;  3OZQ A;  3B9F I;  1OYH I;  4AJU A;  5C98 A;  1OVA A;  1E03 I;  2B4X L;  1JTI A;  2V95 A;  2WXW A;  4ROA A;  1DB2 A;  3DRU A;  2ARQ A;  2R9Y A;  1E05 I;  2WY0 C;  4C49 A;  2ANT I;  9API A;  1DVM A;  3CWM A;  2WXZ C;  2XN5 A;  3EVJ I;  2CEO A;  3F02 A;  4ROB A;  2HIJ I;  4P0O A;  3VVJ A;  5BRR I;  4EB1 I;  3NE4 A;  4CAA A;  5EI0 A;  1IZ2 A;  1JMJ A;  9PAI A;  3T1P A;  4RSQ A;  2OAY A;  2WY1 A;  2H4Q A;  1AS4 A;  2RIV A;  3Q02 A;  3NDD A;  1OYH L;  1F0C A;  5CDZ A;  3DY0 A;  2WXY C;  2RIW A;  1NQ9 I;  1BY7 A;  3F1S A;  1DZG I;  2ZV6 A;  1SNG A;  4IF8 A;  4AU3 B;  1YXA A;  3NDF A;  4G8R A;  3CAA A;  2B5T I;  4AU4 A;  2HIJ L;  1LQ8 A;  2OL2 A;  4Y3K A;  4P0F A;  1EZX A;  1MTP A;  3PZF A;  2ZNH A;  4R9I A;  4AFX A;  1XQG A;  3R4L A;  2GD4 C;  1E04 I;  3KCG I;  3CWL A;  5IO1 A;  1JJO C;  4ZK3 A;  3H5C A;  3F5N A;  3STO A;  8API A;  1R1L I;  1UHG A;  1OPH A;  2VH4 A;  4AU3 A;  2QUG A;  3NDA A;  1XU8 A;  4IC0 A;  1TB6 I;  3EOX A;  4KDS A;  2BEH I;  3ZHA A;  1JMO A;  1DZH I;  3UT3 A;  4AJT A;  2WXZ A;  2XN7 A;  2HI9 A;  4G8O A;  1B3K A;  1ATH A;  4BB2 A;  1M93 B;  1SEK A;  4RO9 A;  1A7C A;  4X30 A;  2H4R A;  3DLW A;  1LJ5 A;  4YIA A;  3LW2 A;  4AQH A;  1SR5 A;  4EB1 L;  2B4X I;  3FGQ A;  7API A;  1OVA B;  1QLP A;  2XN6 A;  4DTE A;  1OVA C;  1KCT A;  5CDX A;  1K9O I;  1ATU A;  4C41 A;  2H4P A;  4AU2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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