1ATUA

Uncleaved alpha-1-antitrypsin
Total Genus 53
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
374
structure length
374
Chain Sequence
PTFNKITPNLAEFAFSLYRQLAHQSNSTNILFSPVSIAAAFAMLSLGAKGDTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLIIEQNTKAPLFMGRVVNPTQK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Serine protease inhibitor
molecule keywords ALPHA-1-ANTITRYPSIN
publication title The native strains in the hydrophobic core and flexible reactive loop of a serine protease inhibitor: crystal structure of an uncleaved alpha1-antitrypsin at 2.7 A.
pubmed doi rcsb
source organism Homo sapiens
total genus 53
structure length 374
sequence length 374
ec nomenclature
pdb deposition date 1997-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1atuA01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1atuA02
7APIA 3T1PA 3CWMA 4CAAA 3DRUA 2H4QA 3F1SA 1OVAA 1WZ9A 2ARRA 2ANTI 1BY7A 2CEOA 1LQ8A 2HIJL 2WXYC 4Y3KA 5HGCA 5CDXA 1HP7A 2RIWA 1DZHL 1QLPA 1ATUA 1A7CA 1HLEA 3OZQA 1JTIA 3F02A 3PB1I 3Q03A 1NQ9I 2QUGA 1F0CA 1XU8A 1BR8I 5EI0A 1OYHI 2RIVA 4ROBA 4P0FA 1AZXI 1D5SA 4C41A 4AJUA 1B3KA 2WY0C 1DVMA 1DZGL 2BEHI 2ZV6A 4RSQA 5BRRI 1OVAB 1JMOA 4C49A 5INWA 1XQJA 1OPHA 4AFXA 1QMNA 2WXZA 2R9YA 1OVAC 1T1FA 1SR5A 2PEEA 5IO1A 4Y40A 2XN7A 3NDFA 1YXAA 2ACHA 3R4LA 1E03I 3CVMA 2D26A 1DVNA 5CE0A 1LK6I 1OYHL 4EB1L 4P0OA 3EVJI 1R1LI 4G8RA 1SEKA 8APIA 4ZK3A 1MTPA 2B4XL 2PEFA 1OO8A 3KCGI 2WXZC 1LJ5A 4YIAA 1C8OA 2ZNHA 3NDDA 4X30A 4R9IA 3STOA 3VVJA 1XQGA 2V95A 1JVQI 3CAAA 3UT3A 1ATTA 1E04I 3DRMA 1K9OI 4AU2A 2HIJI 2H4PA 1C5GA 1DZHI 1DB2A 3FGQA 4RO9A 1E05I 4BB2A 1EZXA 3NE4A 9APIA 1AS4A 2VH4A 2XN3A 4ZK0A 2HI9A 4GA7A 4AU3A 3B9FI 1M93B 3PZFA 4AJTA 4IF8A 2WXXA 1DZGI 4ROAA 2OAYA 2B5TI 2BEHL 2H4RA 2WY1A 3NDAA 4DY0A 1UHGA 4DY7C 5C98A 3Q02A 4AQHA 1OC0A 1KCTA 5CDZA 4G8OA 2XN6A 2ARQA 1JMJA 1ANTI 3LW2A 1ATHA 3CWLA 3F5NA 4PYWA 1JRRA 3LE2A 1SNGA 1JJOC 2XN5A 2VDXA 2VDYA 1TB6I 3DY0A 4AU3B 2DUTA 1PSIA 4AU4A 4EB1I 2GD4C 4IC0A 4KDSA 1IZ2A 1IMVA 2B4XI 3EOXA 3H5CA 4DTEA 3DLWA 3ZHAA 2OL2A 1QMBA 2WXWA 9PAIA
chains in the Genus database with same CATH superfamily
7APIA 3T1PA 3CWMA 4CAAA 3DRUA 2H4QA 3F1SA 1OVAA 1WZ9A 2ARRA 2ANTI 1BY7A 2CEOA 1LQ8A 2HIJL 2WXYC 4Y3KA 5HGCA 5CDXA 1HP7A 2RIWA 1DZHL 1QLPA 1ATUA 1A7CA 1HLEA 3OZQA 1JTIA 3F02A 3PB1I 3Q03A 1NQ9I 2QUGA 1F0CA 1XU8A 1BR8I 5EI0A 1OYHI 2RIVA 4ROBA 4P0FA 1AZXI 1D5SA 4C41A 4AJUA 1B3KA 2WY0C 1DVMA 1DZGL 2BEHI 2ZV6A 4RSQA 5BRRI 1OVAB 1JMOA 4C49A 5INWA 1XQJA 1OPHA 4AFXA 1QMNA 2WXZA 2R9YA 1OVAC 1T1FA 1SR5A 2PEEA 5IO1A 4Y40A 2XN7A 3NDFA 1YXAA 2ACHA 3R4LA 1E03I 3CVMA 2D26A 1DVNA 5CE0A 1LK6I 1OYHL 4EB1L 4P0OA 3EVJI 1R1LI 4G8RA 1SEKA 8APIA 4ZK3A 1MTPA 2B4XL 2PEFA 1OO8A 3KCGI 2WXZC 1LJ5A 4YIAA 1C8OA 2ZNHA 3NDDA 4X30A 4R9IA 3STOA 3VVJA 1XQGA 2V95A 1JVQI 3CAAA 3UT3A 1ATTA 1E04I 3DRMA 1K9OI 4AU2A 2HIJI 2H4PA 1C5GA 1DZHI 1DB2A 3FGQA 4RO9A 1E05I 4BB2A 1EZXA 3NE4A 9APIA 1AS4A 2VH4A 2XN3A 4ZK0A 2HI9A 4GA7A 4AU3A 3B9FI 1M93B 3PZFA 4AJTA 4IF8A 2WXXA 1DZGI 4ROAA 2OAYA 2B5TI 2BEHL 2H4RA 2WY1A 3NDAA 4DY0A 1UHGA 4DY7C 5C98A 3Q02A 4AQHA 1OC0A 1KCTA 5CDZA 4G8OA 2XN6A 2ARQA 1JMJA 1ANTI 3LW2A 1ATHA 3CWLA 3F5NA 4PYWA 1JRRA 3LE2A 1SNGA 1JJOC 2XN5A 2VDXA 2VDYA 1TB6I 3DY0A 4AU3B 2DUTA 1PSIA 4AU4A 4EB1I 2GD4C 4IC0A 4KDSA 1IZ2A 1IMVA 2B4XI 3EOXA 3H5CA 4DTEA 3DLWA 3ZHAA 2OL2A 1QMBA 2WXWA 9PAIA
chains in the Genus database with same CATH topology
7APIA 3T1PA 3CWMA 4CAAA 3DRUA 2H4QA 3F1SA 1OVAA 1WZ9A 2ARRA 2ANTI 1BY7A 2CEOA 1LQ8A 2HIJL 2WXYC 4Y3KA 5HGCA 5CDXA 1HP7A 2RIWA 1DZHL 1QLPA 1ATUA 1A7CA 1HLEA 3OZQA 1JTIA 3F02A 3PB1I 3Q03A 1NQ9I 2QUGA 1F0CA 1XU8A 1BR8I 5EI0A 1OYHI 2RIVA 4ROBA 4P0FA 1AZXI 1D5SA 4C41A 4AJUA 1B3KA 2WY0C 1DVMA 1DZGL 2BEHI 2ZV6A 4RSQA 5BRRI 1OVAB 1JMOA 4C49A 5INWA 1XQJA 1OPHA 4AFXA 1QMNA 2WXZA 2R9YA 1OVAC 1T1FA 1SR5A 2PEEA 5IO1A 4Y40A 2XN7A 3NDFA 1YXAA 2ACHA 3R4LA 1E03I 3CVMA 2D26A 1DVNA 5CE0A 1LK6I 1OYHL 4EB1L 4P0OA 3EVJI 1R1LI 4G8RA 1SEKA 8APIA 4ZK3A 1MTPA 2B4XL 2PEFA 1OO8A 3KCGI 2WXZC 1LJ5A 4YIAA 1C8OA 2ZNHA 3NDDA 4X30A 4R9IA 3STOA 3VVJA 1XQGA 2V95A 1JVQI 3CAAA 3UT3A 1ATTA 1E04I 3DRMA 1K9OI 4AU2A 2HIJI 2H4PA 1C5GA 1DZHI 1DB2A 3FGQA 4RO9A 1E05I 4BB2A 1EZXA 3NE4A 9APIA 1AS4A 2VH4A 2XN3A 4ZK0A 2HI9A 4GA7A 4AU3A 3B9FI 1M93B 3PZFA 4AJTA 4IF8A 2WXXA 1DZGI 4ROAA 2OAYA 2B5TI 2BEHL 2H4RA 2WY1A 3NDAA 4DY0A 1UHGA 4DY7C 5C98A 3Q02A 4AQHA 1OC0A 1KCTA 5CDZA 4G8OA 2XN6A 2ARQA 1JMJA 1ANTI 3LW2A 1ATHA 3CWLA 3F5NA 4PYWA 1JRRA 3LE2A 1SNGA 1JJOC 2XN5A 2VDXA 2VDYA 1TB6I 3DY0A 4AU3B 2DUTA 1PSIA 4AU4A 4EB1I 2GD4C 4IC0A 4KDSA 1IZ2A 1IMVA 2B4XI 3EOXA 3H5CA 4DTEA 3DLWA 3ZHAA 2OL2A 1QMBA 2WXWA 9PAIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7API A;  3T1P A;  3CWM A;  4CAA A;  3DRU A;  2H4Q A;  3F1S A;  1OVA A;  1WZ9 A;  2ARR A;  2ANT I;  1BY7 A;  2CEO A;  1LQ8 A;  2HIJ L;  2WXY C;  4Y3K A;  5HGC A;  5CDX A;  1HP7 A;  2RIW A;  1DZH L;  1QLP A;  1ATU A;  1A7C A;  1HLE A;  3OZQ A;  1JTI A;  3F02 A;  3PB1 I;  3Q03 A;  1NQ9 I;  2QUG A;  1F0C A;  1XU8 A;  1BR8 I;  5EI0 A;  1OYH I;  2RIV A;  4ROB A;  4P0F A;  1AZX I;  1D5S A;  4C41 A;  4AJU A;  1B3K A;  2WY0 C;  1DVM A;  1DZG L;  2BEH I;  2ZV6 A;  4RSQ A;  5BRR I;  1OVA B;  1JMO A;  4C49 A;  5INW A;  1XQJ A;  1OPH A;  4AFX A;  1QMN A;  2WXZ A;  2R9Y A;  1OVA C;  1T1F A;  1SR5 A;  2PEE A;  5IO1 A;  4Y40 A;  2XN7 A;  3NDF A;  1YXA A;  2ACH A;  3R4L A;  1E03 I;  3CVM A;  2D26 A;  1DVN A;  5CE0 A;  1LK6 I;  1OYH L;  4EB1 L;  4P0O A;  3EVJ I;  1R1L I;  4G8R A;  1SEK A;  8API A;  4ZK3 A;  1MTP A;  2B4X L;  2PEF A;  1OO8 A;  3KCG I;  2WXZ C;  1LJ5 A;  4YIA A;  1C8O A;  2ZNH A;  3NDD A;  4X30 A;  4R9I A;  3STO A;  3VVJ A;  1XQG A;  2V95 A;  1JVQ I;  3CAA A;  3UT3 A;  1ATT A;  1E04 I;  3DRM A;  1K9O I;  4AU2 A;  2HIJ I;  2H4P A;  1C5G A;  1DZH I;  1DB2 A;  3FGQ A;  4RO9 A;  1E05 I;  4BB2 A;  1EZX A;  3NE4 A;  9API A;  1AS4 A;  2VH4 A;  2XN3 A;  4ZK0 A;  2HI9 A;  4GA7 A;  4AU3 A;  3B9F I;  1M93 B;  3PZF A;  4AJT A;  4IF8 A;  2WXX A;  1DZG I;  4ROA A;  2OAY A;  2B5T I;  2BEH L;  2H4R A;  2WY1 A;  3NDA A;  4DY0 A;  1UHG A;  4DY7 C;  5C98 A;  3Q02 A;  4AQH A;  1OC0 A;  1KCT A;  5CDZ A;  4G8O A;  2XN6 A;  2ARQ A;  1JMJ A;  1ANT I;  3LW2 A;  1ATH A;  3CWL A;  3F5N A;  4PYW A;  1JRR A;  3LE2 A;  1SNG A;  1JJO C;  2XN5 A;  2VDX A;  2VDY A;  1TB6 I;  3DY0 A;  4AU3 B;  2DUT A;  1PSI A;  4AU4 A;  4EB1 I;  2GD4 C;  4IC0 A;  4KDS A;  1IZ2 A;  1IMV A;  2B4X I;  3EOX A;  3H5C A;  4DTE A;  3DLW A;  3ZHA A;  2OL2 A;  1QMB A;  2WXW A;  9PAI A; 
#chains in the Genus database with same CATH topology
 7API A;  3T1P A;  3CWM A;  4CAA A;  3DRU A;  2H4Q A;  3F1S A;  1OVA A;  1WZ9 A;  2ARR A;  2ANT I;  1BY7 A;  2CEO A;  1LQ8 A;  2HIJ L;  2WXY C;  4Y3K A;  5HGC A;  5CDX A;  1HP7 A;  2RIW A;  1DZH L;  1QLP A;  1ATU A;  1A7C A;  1HLE A;  3OZQ A;  1JTI A;  3F02 A;  3PB1 I;  3Q03 A;  1NQ9 I;  2QUG A;  1F0C A;  1XU8 A;  1BR8 I;  5EI0 A;  1OYH I;  2RIV A;  4ROB A;  4P0F A;  1AZX I;  1D5S A;  4C41 A;  4AJU A;  1B3K A;  2WY0 C;  1DVM A;  1DZG L;  2BEH I;  2ZV6 A;  4RSQ A;  5BRR I;  1OVA B;  1JMO A;  4C49 A;  5INW A;  1XQJ A;  1OPH A;  4AFX A;  1QMN A;  2WXZ A;  2R9Y A;  1OVA C;  1T1F A;  1SR5 A;  2PEE A;  5IO1 A;  4Y40 A;  2XN7 A;  3NDF A;  1YXA A;  2ACH A;  3R4L A;  1E03 I;  3CVM A;  2D26 A;  1DVN A;  5CE0 A;  1LK6 I;  1OYH L;  4EB1 L;  4P0O A;  3EVJ I;  1R1L I;  4G8R A;  1SEK A;  8API A;  4ZK3 A;  1MTP A;  2B4X L;  2PEF A;  1OO8 A;  3KCG I;  2WXZ C;  1LJ5 A;  4YIA A;  1C8O A;  2ZNH A;  3NDD A;  4X30 A;  4R9I A;  3STO A;  3VVJ A;  1XQG A;  2V95 A;  1JVQ I;  3CAA A;  3UT3 A;  1ATT A;  1E04 I;  3DRM A;  1K9O I;  4AU2 A;  2HIJ I;  2H4P A;  1C5G A;  1DZH I;  1DB2 A;  3FGQ A;  4RO9 A;  1E05 I;  4BB2 A;  1EZX A;  3NE4 A;  9API A;  1AS4 A;  2VH4 A;  2XN3 A;  4ZK0 A;  2HI9 A;  4GA7 A;  4AU3 A;  3B9F I;  1M93 B;  3PZF A;  4AJT A;  4IF8 A;  2WXX A;  1DZG I;  4ROA A;  2OAY A;  2B5T I;  2BEH L;  2H4R A;  2WY1 A;  3NDA A;  4DY0 A;  1UHG A;  4DY7 C;  5C98 A;  3Q02 A;  4AQH A;  1OC0 A;  1KCT A;  5CDZ A;  4G8O A;  2XN6 A;  2ARQ A;  1JMJ A;  1ANT I;  3LW2 A;  1ATH A;  3CWL A;  3F5N A;  4PYW A;  1JRR A;  3LE2 A;  1SNG A;  1JJO C;  2XN5 A;  2VDX A;  2VDY A;  1TB6 I;  3DY0 A;  4AU3 B;  2DUT A;  1PSI A;  4AU4 A;  4EB1 I;  2GD4 C;  4IC0 A;  4KDS A;  1IZ2 A;  1IMV A;  2B4X I;  3EOX A;  3H5C A;  4DTE A;  3DLW A;  3ZHA A;  2OL2 A;  1QMB A;  2WXW A;  9PAI A; 
#chains in the Genus database with same CATH homology
 7API A;  3T1P A;  3CWM A;  4CAA A;  3DRU A;  2H4Q A;  3F1S A;  1OVA A;  1WZ9 A;  2ARR A;  2ANT I;  1BY7 A;  2CEO A;  1LQ8 A;  2HIJ L;  2WXY C;  4Y3K A;  5HGC A;  5CDX A;  1HP7 A;  2RIW A;  1DZH L;  1QLP A;  1ATU A;  1A7C A;  1HLE A;  3OZQ A;  1JTI A;  3F02 A;  3PB1 I;  3Q03 A;  1NQ9 I;  2QUG A;  1F0C A;  1XU8 A;  1BR8 I;  5EI0 A;  1OYH I;  2RIV A;  4ROB A;  4P0F A;  1AZX I;  1D5S A;  4C41 A;  4AJU A;  1B3K A;  2WY0 C;  1DVM A;  1DZG L;  2BEH I;  2ZV6 A;  4RSQ A;  5BRR I;  1OVA B;  1JMO A;  4C49 A;  5INW A;  1XQJ A;  1OPH A;  4AFX A;  1QMN A;  2WXZ A;  2R9Y A;  1OVA C;  1T1F A;  1SR5 A;  2PEE A;  5IO1 A;  4Y40 A;  2XN7 A;  3NDF A;  1YXA A;  2ACH A;  3R4L A;  1E03 I;  3CVM A;  2D26 A;  1DVN A;  5CE0 A;  1LK6 I;  1OYH L;  4EB1 L;  4P0O A;  3EVJ I;  1R1L I;  4G8R A;  1SEK A;  8API A;  4ZK3 A;  1MTP A;  2B4X L;  2PEF A;  1OO8 A;  3KCG I;  2WXZ C;  1LJ5 A;  4YIA A;  1C8O A;  2ZNH A;  3NDD A;  4X30 A;  4R9I A;  3STO A;  3VVJ A;  1XQG A;  2V95 A;  1JVQ I;  3CAA A;  3UT3 A;  1ATT A;  1E04 I;  3DRM A;  1K9O I;  4AU2 A;  2HIJ I;  2H4P A;  1C5G A;  1DZH I;  1DB2 A;  3FGQ A;  4RO9 A;  1E05 I;  4BB2 A;  1EZX A;  3NE4 A;  9API A;  1AS4 A;  2VH4 A;  2XN3 A;  4ZK0 A;  2HI9 A;  4GA7 A;  4AU3 A;  3B9F I;  1M93 B;  3PZF A;  4AJT A;  4IF8 A;  2WXX A;  1DZG I;  4ROA A;  2OAY A;  2B5T I;  2BEH L;  2H4R A;  2WY1 A;  3NDA A;  4DY0 A;  1UHG A;  4DY7 C;  5C98 A;  3Q02 A;  4AQH A;  1OC0 A;  1KCT A;  5CDZ A;  4G8O A;  2XN6 A;  2ARQ A;  1JMJ A;  1ANT I;  3LW2 A;  1ATH A;  3CWL A;  3F5N A;  4PYW A;  1JRR A;  3LE2 A;  1SNG A;  1JJO C;  2XN5 A;  2VDX A;  2VDY A;  1TB6 I;  3DY0 A;  4AU3 B;  2DUT A;  1PSI A;  4AU4 A;  4EB1 I;  2GD4 C;  4IC0 A;  4KDS A;  1IZ2 A;  1IMV A;  2B4X I;  3EOX A;  3H5C A;  4DTE A;  3DLW A;  3ZHA A;  2OL2 A;  1QMB A;  2WXW A;  9PAI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...