1AW8B

Pyruvoyl dependent aspartate decarboxylase
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
90
structure length
90
Chain Sequence
CAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Decarboxylase
molecule keywords L-ASPARTATE-ALPHA-DECARBOXYLASE
publication title Crystal structure of aspartate decarboxylase at 2.2 A resolution provides evidence for an ester in protein self-processing.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 90
sequence length 90
chains with identical sequence E
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 1997-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1aw8B00
1E32A 2JIOA 3CF2A 1KQFA 1QCSA 3QC8A 4RV0A 4CS0A 2E7ZA 1G8KA 1G8JA 3HKZA 3HU3A 1TMOA 1H0HA 4AOKB 4AONB 1UHDA 2JA6A 4AZDA 1FDIA 1IW7D 2R92A 5FTJA 3GTGA 2NYAA 3ML1A 1PT1A 2WB1A 2E2IA 1SIWA 1I3QA 4D7ZB 1Y4ZA 3DMRA 1WCMA 3GTKA 4GA6A 1AW8B 1QDNA 4AAYA 1TWAA 2VPXA 1E61A 5EPPA 3GTLA 4KODA 1FDOA 3IR5A 2R93A 1E60A 1E18A 2DMRA 2VPZA 2JIMA 4CRZA 3IR6A 1WLFA 2R7ZA 1DMRA 1VC3B 5C1BA 4KLNA 3QQ7A 2YU9A 1DMSA 2EEOB 2PJHB 1OGYA 1PYUB 4AYBA 2VUMA 3GTQA 2JA5A 3TM7B 1TWFA 4KDLA 3GTMA 2V45A 3H0GA 3O5AA 1E5VA 1Y1WA 2JIPA 2VPWA 1R27A 4CRYG 2B63A 1PQHA 4C2MA 2Y0SA 1AA6A 1PT0A 5DYIA 5T5MD 1PQEA 1Y1VA 2IV2X 1TWHA 5FTLA 3QWZA 2NAPA 5T5ID 5C18A 2PMZA 3GTJA 5GLFA 4QIWA 1H5NA 5FTKA 5FTMA 2JIQA 5DYGA 3CQZA 1PYQA 1Y5IA 1SFOA 2KI8A 2JA7A 2NVYA 1R9TA 4GA5A 1R7RA 3OUGA 3HU2A 2V3VA 2C45A 1EU1A 3QQ8A 1Q16A 1PPYA 5FTNA 1KQGA 2VPYA 4DMRA 3HU1A 3FKIA 3PLXB 3GTOA 3GTPA 1S3SA 1CZ4A 4KO8A 1UHEA 1PQFA 1K83A 2E2HA 2JIRA 2WAQA 4KDIA 2NVXA 5B6CA 1I50A 1CZ5A 1TWCA 1YLEA 1CR5A 1TWGA 3IR7A 3TIWA
chains in the Genus database with same CATH superfamily
2PI8A 3ENGA 1E32A 1HD5A 2JIOA 3CF2A 1KQFA 1QCSA 3QC8A 4RV0A 4CS0A 3X2HA 2E7ZA 1G8KA 1G8JA 3HKZA 3HU3A 3X2KA 1TMOA 1H0HA 4AOKB 4AONB 1UHDA 2JA6A 4AZDA 1FDIA 1IW7D 2R92A 5FTJA 3GTGA 2NYAA 1OA9A 1PT1A 3ML1A 4ZM7A 4FFTA 2PJJA 2WB1A 3X2NA 2E2IA 1SIWA 1I3QA 4D7ZB 3SULA 1Y4ZA 3DMRA 4ENGA 1WCMA 4JJOA 3GTKA 4GA6A 1AW8B 1QDNA 4AAYA 1TWAA 2VPXA 1E61A 2PICA 4JP6A 5EPPA 3X2JA 4KODA 3GTLA 1FDOA 2HCZX 2YUJA 3M3GA 1E60A 1E18A 2DMRA 3IR5A 5H4UA 2VPZA 1BW3A 2KQAA 2JIMA 4FERA 4CRZA 3IR6A 1WLFA 4FG2A 1DMRA 1VC3B 5GLYA 2R7ZA 5C1BA 4KLNA 3QQ7A 2BE5D 2YU9A 1YNND 1WC2A 1DMSA 2EEOB 2PJHB 1OGYA 1PYUB 3SUMA 4AYBA 2VUMA 1SMYD 4NOHA 3GTQA 2JA5A 2G6GA 3X2OA 3TM7B 1TWFA 4KDLA 3GTMA 2V45A 3H0GA 4JCWA 1YNJD 1E5VA 3O5AA 4FG4A 4JP7A 2JIPA 2GAEA 2G5DA 1R27A 2VPWA 4CRYG 1Y1WA 2B63A 1PQHA 4C2MA 2Y0SA 3X2GA 1AA6A 1N10A 1PT0A 5DYIA 5T5MD 1PQEA 1Y1VA 2IV2X 2A69D 1TWHA 2PNWA 2A68D 5FTLA 1L8FA 3QWZA 2NAPA 5T5ID 5C18A 2PMZA 3X2PA 3GTJA 5GLFA 4QIWA 2O5JD 1H5NA 5FTKA 2A6HD 5FTMA 2AE0X 2JIQA 1ZYRD 3X2MA 5DYGA 3CQZA 1PYQA 1Y5IA 1SFOA 2KI8A 2JA7A 2NVYA 1R9TA 4GA5A 1R7RA 3OUGA 5GLXA 3HU2A 2V3VA 2C45A 4JS7A 3D30A 1EU1A 3SUKA 3QQ8A 1Q16A 4L48A 1PPYA 5FTNA 1KQGA 3X2LA 2VPYA 4DMRA 3HU1A 3FKIA 3PLXB 3GTOA 1ZC1A 2BH0A 3GTPA 2ENGA 1S3SA 1OA7A 1CZ4A 4KO8A 1UHEA 2A6ED 1PQFA 1K83A 2E2HA 2JIRA 2WAQA 4KDIA 3SUJA 2R93A 3CZBA 5GM9A 2NVXA 5B6CA 2CW0D 1I50A 1CZ5A 1TWCA 1YLEA 1CR5A 1BW4A 1TWGA 3IR7A 3TIWA 3X2IA 4AVRA
chains in the Genus database with same CATH topology
2PI8A 1E32A 2JIOA 3CF2A 1KQFA 1QCSA 3QC8A 4RV0A 4CS0A 2E7ZA 1G8KA 1G8JA 3HKZA 3HU3A 1TMOA 1H0HA 4AOKB 4AONB 1UHDA 2JA6A 4AZDA 1FDIA 1IW7D 2R92A 5FTJA 3GTGA 2NYAA 3ML1A 1PT1A 2PJJA 2WB1A 2E2IA 1SIWA 1I3QA 4D7ZB 1Y4ZA 3DMRA 1WCMA 3GTKA 4GA6A 1AW8B 1QDNA 4AAYA 1TWAA 2VPXA 1E61A 2PICA 5EPPA 3GTLA 4KODA 1FDOA 2YUJA 3IR5A 2R93A 1E60A 1E18A 2DMRA 2VPZA 2JIMA 4CRZA 3IR6A 1WLFA 2R7ZA 1DMRA 1VC3B 5C1BA 4KLNA 3QQ7A 2BE5D 2YU9A 1YNND 1DMSA 2EEOB 2PJHB 1OGYA 1PYUB 4AYBA 2VUMA 1SMYD 4NOHA 3GTQA 2JA5A 2G6GA 3TM7B 1TWFA 4KDLA 3GTMA 2V45A 3H0GA 1YNJD 1E5VA 3O5AA 1Y1WA 2JIPA 2GAEA 2G5DA 1R27A 2VPWA 4CRYG 2B63A 1PQHA 4C2MA 2Y0SA 1AA6A 1PT0A 5DYIA 5T5MD 1PQEA 1Y1VA 2IV2X 2A69D 1TWHA 2PNWA 2A68D 5FTLA 3QWZA 2NAPA 5T5ID 5C18A 2PMZA 3GTJA 5GLFA 4QIWA 2O5JD 1H5NA 5FTKA 2A6HD 5FTMA 2AE0X 2JIQA 1ZYRD 5DYGA 3CQZA 1PYQA 1Y5IA 1SFOA 2KI8A 2JA7A 2NVYA 1R9TA 4GA5A 1R7RA 3OUGA 3HU2A 2V3VA 2C45A 1EU1A 3QQ8A 1Q16A 1PPYA 5FTNA 1KQGA 2VPYA 4DMRA 3HU1A 3FKIA 3PLXB 3GTOA 1ZC1A 3GTPA 1S3SA 1CZ4A 4KO8A 1UHEA 2A6ED 1PQFA 1K83A 2E2HA 2JIRA 2WAQA 4KDIA 3CZBA 2NVXA 5B6CA 2CW0D 1I50A 1CZ5A 1TWCA 1YLEA 1CR5A 1TWGA 3IR7A 3TIWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E32 A;  2JIO A;  3CF2 A;  1KQF A;  1QCS A;  3QC8 A;  4RV0 A;  4CS0 A;  2E7Z A;  1G8K A;  1G8J A;  3HKZ A;  3HU3 A;  1TMO A;  1H0H A;  4AOK B;  4AON B;  1UHD A;  2JA6 A;  4AZD A;  1FDI A;  1IW7 D;  2R92 A;  5FTJ A;  3GTG A;  2NYA A;  3ML1 A;  1PT1 A;  2WB1 A;  2E2I A;  1SIW A;  1I3Q A;  4D7Z B;  1Y4Z A;  3DMR A;  1WCM A;  3GTK A;  4GA6 A;  1AW8 B;  1QDN A;  4AAY A;  1TWA A;  2VPX A;  1E61 A;  5EPP A;  3GTL A;  4KOD A;  1FDO A;  3IR5 A;  2R93 A;  1E60 A;  1E18 A;  2DMR A;  2VPZ A;  2JIM A;  4CRZ A;  3IR6 A;  1WLF A;  2R7Z A;  1DMR A;  1VC3 B;  5C1B A;  4KLN A;  3QQ7 A;  2YU9 A;  1DMS A;  2EEO B;  2PJH B;  1OGY A;  1PYU B;  4AYB A;  2VUM A;  3GTQ A;  2JA5 A;  3TM7 B;  1TWF A;  4KDL A;  3GTM A;  2V45 A;  3H0G A;  3O5A A;  1E5V A;  1Y1W A;  2JIP A;  2VPW A;  1R27 A;  4CRY G;  2B63 A;  1PQH A;  4C2M A;  2Y0S A;  1AA6 A;  1PT0 A;  5DYI A;  5T5M D;  1PQE A;  1Y1V A;  2IV2 X;  1TWH A;  5FTL A;  3QWZ A;  2NAP A;  5T5I D;  5C18 A;  2PMZ A;  3GTJ A;  5GLF A;  4QIW A;  1H5N A;  5FTK A;  5FTM A;  2JIQ A;  5DYG A;  3CQZ A;  1PYQ A;  1Y5I A;  1SFO A;  2KI8 A;  2JA7 A;  2NVY A;  1R9T A;  4GA5 A;  1R7R A;  3OUG A;  3HU2 A;  2V3V A;  2C45 A;  1EU1 A;  3QQ8 A;  1Q16 A;  1PPY A;  5FTN A;  1KQG A;  2VPY A;  4DMR A;  3HU1 A;  3FKI A;  3PLX B;  3GTO A;  3GTP A;  1S3S A;  1CZ4 A;  4KO8 A;  1UHE A;  1PQF A;  1K83 A;  2E2H A;  2JIR A;  2WAQ A;  4KDI A;  2NVX A;  5B6C A;  1I50 A;  1CZ5 A;  1TWC A;  1YLE A;  1CR5 A;  1TWG A;  3IR7 A;  3TIW A; 
#chains in the Genus database with same CATH topology
 2PI8 A;  3ENG A;  1E32 A;  1HD5 A;  2JIO A;  3CF2 A;  1KQF A;  1QCS A;  3QC8 A;  4RV0 A;  4CS0 A;  3X2H A;  2E7Z A;  1G8K A;  1G8J A;  3HKZ A;  3HU3 A;  3X2K A;  1TMO A;  1H0H A;  4AOK B;  4AON B;  1UHD A;  2JA6 A;  4AZD A;  1FDI A;  1IW7 D;  2R92 A;  5FTJ A;  3GTG A;  2NYA A;  1OA9 A;  1PT1 A;  3ML1 A;  4ZM7 A;  4FFT A;  2PJJ A;  2WB1 A;  3X2N A;  2E2I A;  1SIW A;  1I3Q A;  4D7Z B;  3SUL A;  1Y4Z A;  3DMR A;  4ENG A;  1WCM A;  4JJO A;  3GTK A;  4GA6 A;  1AW8 B;  1QDN A;  4AAY A;  1TWA A;  2VPX A;  1E61 A;  2PIC A;  4JP6 A;  5EPP A;  3X2J A;  4KOD A;  3GTL A;  1FDO A;  2HCZ X;  2YUJ A;  3M3G A;  1E60 A;  1E18 A;  2DMR A;  3IR5 A;  5H4U A;  2VPZ A;  1BW3 A;  2KQA A;  2JIM A;  4FER A;  4CRZ A;  3IR6 A;  1WLF A;  4FG2 A;  1DMR A;  1VC3 B;  5GLY A;  2R7Z A;  5C1B A;  4KLN A;  3QQ7 A;  2BE5 D;  2YU9 A;  1YNN D;  1WC2 A;  1DMS A;  2EEO B;  2PJH B;  1OGY A;  1PYU B;  3SUM A;  4AYB A;  2VUM A;  1SMY D;  4NOH A;  3GTQ A;  2JA5 A;  2G6G A;  3X2O A;  3TM7 B;  1TWF A;  4KDL A;  3GTM A;  2V45 A;  3H0G A;  4JCW A;  1YNJ D;  1E5V A;  3O5A A;  4FG4 A;  4JP7 A;  2JIP A;  2GAE A;  2G5D A;  1R27 A;  2VPW A;  4CRY G;  1Y1W A;  2B63 A;  1PQH A;  4C2M A;  2Y0S A;  3X2G A;  1AA6 A;  1N10 A;  1PT0 A;  5DYI A;  5T5M D;  1PQE A;  1Y1V A;  2IV2 X;  2A69 D;  1TWH A;  2PNW A;  2A68 D;  5FTL A;  1L8F A;  3QWZ A;  2NAP A;  5T5I D;  5C18 A;  2PMZ A;  3X2P A;  3GTJ A;  5GLF A;  4QIW A;  2O5J D;  1H5N A;  5FTK A;  2A6H D;  5FTM A;  2AE0 X;  2JIQ A;  1ZYR D;  3X2M A;  5DYG A;  3CQZ A;  1PYQ A;  1Y5I A;  1SFO A;  2KI8 A;  2JA7 A;  2NVY A;  1R9T A;  4GA5 A;  1R7R A;  3OUG A;  5GLX A;  3HU2 A;  2V3V A;  2C45 A;  4JS7 A;  3D30 A;  1EU1 A;  3SUK A;  3QQ8 A;  1Q16 A;  4L48 A;  1PPY A;  5FTN A;  1KQG A;  3X2L A;  2VPY A;  4DMR A;  3HU1 A;  3FKI A;  3PLX B;  3GTO A;  1ZC1 A;  2BH0 A;  3GTP A;  2ENG A;  1S3S A;  1OA7 A;  1CZ4 A;  4KO8 A;  1UHE A;  2A6E D;  1PQF A;  1K83 A;  2E2H A;  2JIR A;  2WAQ A;  4KDI A;  3SUJ A;  2R93 A;  3CZB A;  5GM9 A;  2NVX A;  5B6C A;  2CW0 D;  1I50 A;  1CZ5 A;  1TWC A;  1YLE A;  1CR5 A;  1BW4 A;  1TWG A;  3IR7 A;  3TIW A;  3X2I A;  4AVR A; 
#chains in the Genus database with same CATH homology
 2PI8 A;  1E32 A;  2JIO A;  3CF2 A;  1KQF A;  1QCS A;  3QC8 A;  4RV0 A;  4CS0 A;  2E7Z A;  1G8K A;  1G8J A;  3HKZ A;  3HU3 A;  1TMO A;  1H0H A;  4AOK B;  4AON B;  1UHD A;  2JA6 A;  4AZD A;  1FDI A;  1IW7 D;  2R92 A;  5FTJ A;  3GTG A;  2NYA A;  3ML1 A;  1PT1 A;  2PJJ A;  2WB1 A;  2E2I A;  1SIW A;  1I3Q A;  4D7Z B;  1Y4Z A;  3DMR A;  1WCM A;  3GTK A;  4GA6 A;  1AW8 B;  1QDN A;  4AAY A;  1TWA A;  2VPX A;  1E61 A;  2PIC A;  5EPP A;  3GTL A;  4KOD A;  1FDO A;  2YUJ A;  3IR5 A;  2R93 A;  1E60 A;  1E18 A;  2DMR A;  2VPZ A;  2JIM A;  4CRZ A;  3IR6 A;  1WLF A;  2R7Z A;  1DMR A;  1VC3 B;  5C1B A;  4KLN A;  3QQ7 A;  2BE5 D;  2YU9 A;  1YNN D;  1DMS A;  2EEO B;  2PJH B;  1OGY A;  1PYU B;  4AYB A;  2VUM A;  1SMY D;  4NOH A;  3GTQ A;  2JA5 A;  2G6G A;  3TM7 B;  1TWF A;  4KDL A;  3GTM A;  2V45 A;  3H0G A;  1YNJ D;  1E5V A;  3O5A A;  1Y1W A;  2JIP A;  2GAE A;  2G5D A;  1R27 A;  2VPW A;  4CRY G;  2B63 A;  1PQH A;  4C2M A;  2Y0S A;  1AA6 A;  1PT0 A;  5DYI A;  5T5M D;  1PQE A;  1Y1V A;  2IV2 X;  2A69 D;  1TWH A;  2PNW A;  2A68 D;  5FTL A;  3QWZ A;  2NAP A;  5T5I D;  5C18 A;  2PMZ A;  3GTJ A;  5GLF A;  4QIW A;  2O5J D;  1H5N A;  5FTK A;  2A6H D;  5FTM A;  2AE0 X;  2JIQ A;  1ZYR D;  5DYG A;  3CQZ A;  1PYQ A;  1Y5I A;  1SFO A;  2KI8 A;  2JA7 A;  2NVY A;  1R9T A;  4GA5 A;  1R7R A;  3OUG A;  3HU2 A;  2V3V A;  2C45 A;  1EU1 A;  3QQ8 A;  1Q16 A;  1PPY A;  5FTN A;  1KQG A;  2VPY A;  4DMR A;  3HU1 A;  3FKI A;  3PLX B;  3GTO A;  1ZC1 A;  3GTP A;  1S3S A;  1CZ4 A;  4KO8 A;  1UHE A;  2A6E D;  1PQF A;  1K83 A;  2E2H A;  2JIR A;  2WAQ A;  4KDI A;  3CZB A;  2NVX A;  5B6C A;  2CW0 D;  1I50 A;  1CZ5 A;  1TWC A;  1YLE A;  1CR5 A;  1TWG A;  3IR7 A;  3TIW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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