1B8JA

Alkaline phosphatase complexed with vanadate
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
449
structure length
448
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
molecule keywords PROTEIN (ALKALINE PHOSPHATASE)
publication title A model of the transition state in the alkaline phosphatase reaction.
pubmed doi rcsb
source organism Escherichia coli
total genus 163
structure length 448
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1999-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1b8jA00
1AJDA 4LRBA 4LR8A 2G9YA 5KXAA 5DLVA 4ZGAA 5TJ3A 2ZKTA 1E1ZP 1KHLA 4UPHA 3TWZA 2W5WA 3T01A 1HJKA 2X98A 3IGYB 1ZEBA 3OT9A 1EW9A 5DLWA 5LQQA 1EJJA 5LIAA 3WAVA 4UPLA 1SHQA 2GLQA 3UO0A 4LRFA 2ANHA 3LXQA 2XR9A 4UPIA 1KHKA 1E2SP 5L0EA 1KH7A 4CXSA 3T02A 1KHJA 1SHNA 1ALKA 4FDIA 4LREA 2W8DA 1EQJA 5AJ9A 4CYRA 3M8WA 3IGZB 4UOOA 1E33P 3E2DA 3SZYA 4TN0A 3NKMA 4ZG9A 1URAA 3M8ZA 1FSUA 3M7VA 3BDFA 1N2LA 5K4PA 5L0KA 3UNYA 1KH4A 3ED4A 1ELXA 2GSNA 5IJSA 4NWXA 2IUCB 4GTWA 4GTZA 4UPKA 1E3CP 5GOVA 1EI6A 1ED8A 1K7HA 3NKQA 3WAYA 1ALIA 4CXKA 2GSOA 1AUKA 3SZZA 1Y6VA 2W8SA 4GTYA 3WBHA 1EW8A 3NKOA 4CYSA 2W5SA 3CMRA 4LRCA 1AJCA 2IUCA 5HRTA 4MIVA 3TG0A 1P49A 1ALHA 1Y7AA 3BDHA 3Q3QA 4FDJA 3NVLA 3UN5A 3IDDA 4ZG6A 3NKRA 3WAXA 4LRDA 3TX0A 4NWJA 5LRMA 2W5QA 2QZUA 4LQYA 5EGEA 5LRNA 2W5TA 1HQAA 3B5QA 4KM4A 5IJQA 5DLTA 3NKNA 4KJGA 4MY4A 4CXUA 2D1GA 2GSUA 4KJDA 2XRGA 1EW2A 4LRAA 5C66A 1ANIA 5INHA 1KH9A 5EGHA 4B56A 1URBA 3KD8A 4MHXA 3M8YA 4LR9A 1ED9A 3DPCA 4ZG7A 3BDGB 1HDHA 2W5VA 3MK1A 1ALJA 4YR1A 4LR2A 4QAXA 3WAWA 1ANJA 4UORA 3MK2A 1AJAA 4UOPA 1ZEDA 2GA3A 1ELYA 1ELZA 1N2KA 1KHNA 3T00A 3NKPA 4KAVA 5L0BA 1O99A 3A52A 4N7TA 2IFYA 3BDGA 2VQRA 1O98A 4LR7A 3UN3A 3MK0A 5GRRA 1AJBA 2RH6A 4KAYA 3DYCA 2W5XA 1B8JA 1ZEFA 1KH5A 2W5RA 4GTXA 3UN2A
chains in the Genus database with same CATH superfamily
1AJDA 4LRBA 4LR8A 2G9YA 5KXAA 5DLVA 4ZGAA 5TJ3A 2ZKTA 1E1ZP 1KHLA 4UPHA 3TWZA 2W5WA 3T01A 1HJKA 2X98A 3IGYB 1ZEBA 3OT9A 1EW9A 5DLWA 5LQQA 1EJJA 5LIAA 3WAVA 4UPLA 1SHQA 2GLQA 3UO0A 4LRFA 2ANHA 3LXQA 2XR9A 4UPIA 1KHKA 1E2SP 5L0EA 1KH7A 4CXSA 3T02A 1KHJA 1SHNA 1ALKA 4FDIA 4LREA 2W8DA 1EQJA 5AJ9A 4CYRA 3M8WA 3IGZB 4UOOA 1E33P 3E2DA 3SZYA 4TN0A 3NKMA 4ZG9A 1URAA 3M8ZA 1FSUA 3M7VA 3BDFA 1N2LA 5K4PA 5L0KA 3UNYA 1KH4A 3ED4A 1ELXA 2GSNA 5IJSA 4NWXA 2IUCB 4GTWA 4GTZA 4UPKA 1E3CP 5GOVA 1EI6A 1ED8A 1K7HA 3NKQA 3WAYA 1ALIA 4CXKA 2GSOA 1AUKA 3SZZA 1Y6VA 2W8SA 4GTYA 3WBHA 1EW8A 3NKOA 4CYSA 2W5SA 3CMRA 4LRCA 1AJCA 2IUCA 5HRTA 4MIVA 3TG0A 1P49A 1ALHA 1Y7AA 3BDHA 3Q3QA 4FDJA 3NVLA 3UN5A 3IDDA 4ZG6A 3NKRA 3WAXA 4LRDA 3TX0A 4NWJA 5LRMA 2W5QA 2QZUA 4LQYA 5EGEA 5LRNA 2W5TA 1HQAA 3B5QA 4KM4A 5IJQA 5DLTA 3NKNA 4KJGA 4MY4A 4CXUA 2D1GA 2GSUA 4KJDA 2XRGA 1EW2A 4LRAA 5C66A 1ANIA 5INHA 1KH9A 5EGHA 4B56A 1URBA 3KD8A 4MHXA 3M8YA 4LR9A 1ED9A 3DPCA 4ZG7A 3BDGB 1HDHA 2W5VA 3MK1A 1ALJA 4YR1A 4LR2A 4QAXA 3WAWA 1ANJA 4UORA 3MK2A 1AJAA 4UOPA 1ZEDA 2GA3A 1ELYA 1ELZA 1N2KA 1KHNA 3T00A 3NKPA 4KAVA 5L0BA 1O99A 3A52A 4N7TA 2IFYA 3BDGA 2VQRA 1O98A 4LR7A 3UN3A 3MK0A 5GRRA 1AJBA 2RH6A 4KAYA 3DYCA 2W5XA 1B8JA 1ZEFA 1KH5A 2W5RA 4GTXA 3UN2A
chains in the Genus database with same CATH topology
1AJDA 4LRBA 4LR8A 2G9YA 5KXAA 5DLVA 4ZGAA 5TJ3A 2ZKTA 1E1ZP 1KHLA 4UPHA 3TWZA 2W5WA 3T01A 1HJKA 2X98A 3IGYB 1ZEBA 3OT9A 1EW9A 5DLWA 5LQQA 1EJJA 5LIAA 3WAVA 4UPLA 1SHQA 2GLQA 3UO0A 4LRFA 2ANHA 3LXQA 2XR9A 4UPIA 1KHKA 1E2SP 5L0EA 1KH7A 4CXSA 3T02A 1KHJA 1SHNA 1ALKA 4FDIA 4LREA 2W8DA 1EQJA 5AJ9A 4CYRA 3M8WA 3IGZB 4UOOA 1E33P 3E2DA 3SZYA 4TN0A 3NKMA 4ZG9A 1URAA 3M8ZA 1FSUA 3M7VA 3BDFA 1N2LA 5K4PA 5L0KA 3UNYA 1KH4A 3ED4A 1ELXA 2GSNA 5IJSA 4NWXA 2IUCB 4GTWA 4GTZA 4UPKA 1E3CP 5GOVA 1EI6A 1ED8A 1K7HA 3NKQA 3WAYA 1ALIA 4CXKA 2GSOA 1AUKA 3SZZA 1Y6VA 2W8SA 4GTYA 3WBHA 1EW8A 3NKOA 4CYSA 2W5SA 3CMRA 4LRCA 1AJCA 2IUCA 5HRTA 4MIVA 3TG0A 1P49A 1ALHA 1Y7AA 3BDHA 3Q3QA 4FDJA 3NVLA 3UN5A 3IDDA 4ZG6A 3NKRA 3WAXA 4LRDA 3TX0A 4NWJA 5LRMA 2W5QA 2QZUA 4LQYA 5EGEA 5LRNA 2W5TA 1HQAA 3B5QA 4KM4A 5IJQA 5DLTA 3NKNA 4KJGA 4MY4A 4CXUA 2D1GA 2GSUA 4KJDA 2XRGA 1EW2A 4LRAA 5C66A 1ANIA 5INHA 1KH9A 5EGHA 4B56A 1URBA 3KD8A 4MHXA 3M8YA 4LR9A 1ED9A 3DPCA 4ZG7A 3BDGB 1HDHA 2W5VA 3MK1A 1ALJA 4YR1A 4LR2A 4QAXA 3WAWA 1ANJA 4UORA 3MK2A 1AJAA 4UOPA 1ZEDA 2GA3A 1ELYA 1ELZA 1N2KA 1KHNA 3T00A 3NKPA 4KAVA 5L0BA 1O99A 3A52A 4N7TA 2IFYA 3BDGA 2VQRA 1O98A 4LR7A 3UN3A 3MK0A 5GRRA 1AJBA 2RH6A 4KAYA 3DYCA 2W5XA 1B8JA 1ZEFA 1KH5A 2W5RA 4GTXA 3UN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJD A;  4LRB A;  4LR8 A;  2G9Y A;  5KXA A;  5DLV A;  4ZGA A;  5TJ3 A;  2ZKT A;  1E1Z P;  1KHL A;  4UPH A;  3TWZ A;  2W5W A;  3T01 A;  1HJK A;  2X98 A;  3IGY B;  1ZEB A;  3OT9 A;  1EW9 A;  5DLW A;  5LQQ A;  1EJJ A;  5LIA A;  3WAV A;  4UPL A;  1SHQ A;  2GLQ A;  3UO0 A;  4LRF A;  2ANH A;  3LXQ A;  2XR9 A;  4UPI A;  1KHK A;  1E2S P;  5L0E A;  1KH7 A;  4CXS A;  3T02 A;  1KHJ A;  1SHN A;  1ALK A;  4FDI A;  4LRE A;  2W8D A;  1EQJ A;  5AJ9 A;  4CYR A;  3M8W A;  3IGZ B;  4UOO A;  1E33 P;  3E2D A;  3SZY A;  4TN0 A;  3NKM A;  4ZG9 A;  1URA A;  3M8Z A;  1FSU A;  3M7V A;  3BDF A;  1N2L A;  5K4P A;  5L0K A;  3UNY A;  1KH4 A;  3ED4 A;  1ELX A;  2GSN A;  5IJS A;  4NWX A;  2IUC B;  4GTW A;  4GTZ A;  4UPK A;  1E3C P;  5GOV A;  1EI6 A;  1ED8 A;  1K7H A;  3NKQ A;  3WAY A;  1ALI A;  4CXK A;  2GSO A;  1AUK A;  3SZZ A;  1Y6V A;  2W8S A;  4GTY A;  3WBH A;  1EW8 A;  3NKO A;  4CYS A;  2W5S A;  3CMR A;  4LRC A;  1AJC A;  2IUC A;  5HRT A;  4MIV A;  3TG0 A;  1P49 A;  1ALH A;  1Y7A A;  3BDH A;  3Q3Q A;  4FDJ A;  3NVL A;  3UN5 A;  3IDD A;  4ZG6 A;  3NKR A;  3WAX A;  4LRD A;  3TX0 A;  4NWJ A;  5LRM A;  2W5Q A;  2QZU A;  4LQY A;  5EGE A;  5LRN A;  2W5T A;  1HQA A;  3B5Q A;  4KM4 A;  5IJQ A;  5DLT A;  3NKN A;  4KJG A;  4MY4 A;  4CXU A;  2D1G A;  2GSU A;  4KJD A;  2XRG A;  1EW2 A;  4LRA A;  5C66 A;  1ANI A;  5INH A;  1KH9 A;  5EGH A;  4B56 A;  1URB A;  3KD8 A;  4MHX A;  3M8Y A;  4LR9 A;  1ED9 A;  3DPC A;  4ZG7 A;  3BDG B;  1HDH A;  2W5V A;  3MK1 A;  1ALJ A;  4YR1 A;  4LR2 A;  4QAX A;  3WAW A;  1ANJ A;  4UOR A;  3MK2 A;  1AJA A;  4UOP A;  1ZED A;  2GA3 A;  1ELY A;  1ELZ A;  1N2K A;  1KHN A;  3T00 A;  3NKP A;  4KAV A;  5L0B A;  1O99 A;  3A52 A;  4N7T A;  2IFY A;  3BDG A;  2VQR A;  1O98 A;  4LR7 A;  3UN3 A;  3MK0 A;  5GRR A;  1AJB A;  2RH6 A;  4KAY A;  3DYC A;  2W5X A;  1B8J A;  1ZEF A;  1KH5 A;  2W5R A;  4GTX A;  3UN2 A; 
#chains in the Genus database with same CATH topology
 1AJD A;  4LRB A;  4LR8 A;  2G9Y A;  5KXA A;  5DLV A;  4ZGA A;  5TJ3 A;  2ZKT A;  1E1Z P;  1KHL A;  4UPH A;  3TWZ A;  2W5W A;  3T01 A;  1HJK A;  2X98 A;  3IGY B;  1ZEB A;  3OT9 A;  1EW9 A;  5DLW A;  5LQQ A;  1EJJ A;  5LIA A;  3WAV A;  4UPL A;  1SHQ A;  2GLQ A;  3UO0 A;  4LRF A;  2ANH A;  3LXQ A;  2XR9 A;  4UPI A;  1KHK A;  1E2S P;  5L0E A;  1KH7 A;  4CXS A;  3T02 A;  1KHJ A;  1SHN A;  1ALK A;  4FDI A;  4LRE A;  2W8D A;  1EQJ A;  5AJ9 A;  4CYR A;  3M8W A;  3IGZ B;  4UOO A;  1E33 P;  3E2D A;  3SZY A;  4TN0 A;  3NKM A;  4ZG9 A;  1URA A;  3M8Z A;  1FSU A;  3M7V A;  3BDF A;  1N2L A;  5K4P A;  5L0K A;  3UNY A;  1KH4 A;  3ED4 A;  1ELX A;  2GSN A;  5IJS A;  4NWX A;  2IUC B;  4GTW A;  4GTZ A;  4UPK A;  1E3C P;  5GOV A;  1EI6 A;  1ED8 A;  1K7H A;  3NKQ A;  3WAY A;  1ALI A;  4CXK A;  2GSO A;  1AUK A;  3SZZ A;  1Y6V A;  2W8S A;  4GTY A;  3WBH A;  1EW8 A;  3NKO A;  4CYS A;  2W5S A;  3CMR A;  4LRC A;  1AJC A;  2IUC A;  5HRT A;  4MIV A;  3TG0 A;  1P49 A;  1ALH A;  1Y7A A;  3BDH A;  3Q3Q A;  4FDJ A;  3NVL A;  3UN5 A;  3IDD A;  4ZG6 A;  3NKR A;  3WAX A;  4LRD A;  3TX0 A;  4NWJ A;  5LRM A;  2W5Q A;  2QZU A;  4LQY A;  5EGE A;  5LRN A;  2W5T A;  1HQA A;  3B5Q A;  4KM4 A;  5IJQ A;  5DLT A;  3NKN A;  4KJG A;  4MY4 A;  4CXU A;  2D1G A;  2GSU A;  4KJD A;  2XRG A;  1EW2 A;  4LRA A;  5C66 A;  1ANI A;  5INH A;  1KH9 A;  5EGH A;  4B56 A;  1URB A;  3KD8 A;  4MHX A;  3M8Y A;  4LR9 A;  1ED9 A;  3DPC A;  4ZG7 A;  3BDG B;  1HDH A;  2W5V A;  3MK1 A;  1ALJ A;  4YR1 A;  4LR2 A;  4QAX A;  3WAW A;  1ANJ A;  4UOR A;  3MK2 A;  1AJA A;  4UOP A;  1ZED A;  2GA3 A;  1ELY A;  1ELZ A;  1N2K A;  1KHN A;  3T00 A;  3NKP A;  4KAV A;  5L0B A;  1O99 A;  3A52 A;  4N7T A;  2IFY A;  3BDG A;  2VQR A;  1O98 A;  4LR7 A;  3UN3 A;  3MK0 A;  5GRR A;  1AJB A;  2RH6 A;  4KAY A;  3DYC A;  2W5X A;  1B8J A;  1ZEF A;  1KH5 A;  2W5R A;  4GTX A;  3UN2 A; 
#chains in the Genus database with same CATH homology
 1AJD A;  4LRB A;  4LR8 A;  2G9Y A;  5KXA A;  5DLV A;  4ZGA A;  5TJ3 A;  2ZKT A;  1E1Z P;  1KHL A;  4UPH A;  3TWZ A;  2W5W A;  3T01 A;  1HJK A;  2X98 A;  3IGY B;  1ZEB A;  3OT9 A;  1EW9 A;  5DLW A;  5LQQ A;  1EJJ A;  5LIA A;  3WAV A;  4UPL A;  1SHQ A;  2GLQ A;  3UO0 A;  4LRF A;  2ANH A;  3LXQ A;  2XR9 A;  4UPI A;  1KHK A;  1E2S P;  5L0E A;  1KH7 A;  4CXS A;  3T02 A;  1KHJ A;  1SHN A;  1ALK A;  4FDI A;  4LRE A;  2W8D A;  1EQJ A;  5AJ9 A;  4CYR A;  3M8W A;  3IGZ B;  4UOO A;  1E33 P;  3E2D A;  3SZY A;  4TN0 A;  3NKM A;  4ZG9 A;  1URA A;  3M8Z A;  1FSU A;  3M7V A;  3BDF A;  1N2L A;  5K4P A;  5L0K A;  3UNY A;  1KH4 A;  3ED4 A;  1ELX A;  2GSN A;  5IJS A;  4NWX A;  2IUC B;  4GTW A;  4GTZ A;  4UPK A;  1E3C P;  5GOV A;  1EI6 A;  1ED8 A;  1K7H A;  3NKQ A;  3WAY A;  1ALI A;  4CXK A;  2GSO A;  1AUK A;  3SZZ A;  1Y6V A;  2W8S A;  4GTY A;  3WBH A;  1EW8 A;  3NKO A;  4CYS A;  2W5S A;  3CMR A;  4LRC A;  1AJC A;  2IUC A;  5HRT A;  4MIV A;  3TG0 A;  1P49 A;  1ALH A;  1Y7A A;  3BDH A;  3Q3Q A;  4FDJ A;  3NVL A;  3UN5 A;  3IDD A;  4ZG6 A;  3NKR A;  3WAX A;  4LRD A;  3TX0 A;  4NWJ A;  5LRM A;  2W5Q A;  2QZU A;  4LQY A;  5EGE A;  5LRN A;  2W5T A;  1HQA A;  3B5Q A;  4KM4 A;  5IJQ A;  5DLT A;  3NKN A;  4KJG A;  4MY4 A;  4CXU A;  2D1G A;  2GSU A;  4KJD A;  2XRG A;  1EW2 A;  4LRA A;  5C66 A;  1ANI A;  5INH A;  1KH9 A;  5EGH A;  4B56 A;  1URB A;  3KD8 A;  4MHX A;  3M8Y A;  4LR9 A;  1ED9 A;  3DPC A;  4ZG7 A;  3BDG B;  1HDH A;  2W5V A;  3MK1 A;  1ALJ A;  4YR1 A;  4LR2 A;  4QAX A;  3WAW A;  1ANJ A;  4UOR A;  3MK2 A;  1AJA A;  4UOP A;  1ZED A;  2GA3 A;  1ELY A;  1ELZ A;  1N2K A;  1KHN A;  3T00 A;  3NKP A;  4KAV A;  5L0B A;  1O99 A;  3A52 A;  4N7T A;  2IFY A;  3BDG A;  2VQR A;  1O98 A;  4LR7 A;  3UN3 A;  3MK0 A;  5GRR A;  1AJB A;  2RH6 A;  4KAY A;  3DYC A;  2W5X A;  1B8J A;  1ZEF A;  1KH5 A;  2W5R A;  4GTX A;  3UN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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