1C3RA

Crystal structure of an hdac homolog complexed with trichostatin a
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
372
structure length
372
Chain Sequence
KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERSQSVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)
publication title Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 133
structure length 372
sequence length 372
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 1c3rA00
3MAXA 5G0GA 3F07A 5G1CA 4BZ6A 5DC8A 1VKGA 5A2SA 3MZ3A 5BWZA 5G0HA 3RQDA 5EFBD 5G0IA 5THVA 5ICNB 3F06A 4BZ7A 5D1CA 4QA3A 4ZUPA 1C3PA 5G10A 1T69A 1W22A 5D1BA 5EFGA 4QA1A 4BZ8A 1T64A 5LI3A 2VQOA 2VQMA 3Q9CA 5EF7A 3C0ZA 4ZURA 4RN0A 5G0YA 5EFJD 4ZUQA 5EENA 5D1DA 3MENA 3Q9BA 4LY1A 5G1BA 5G1AA 5G0JA 4CBYA 5FUEA 3F0RA 3EW8A 4CQFA 5JI5A 5EFNA 2VQWG 4BZ9A 1ZZ3A 2VQQA 4A69A 4QA0A 1C3RA 3EWFA 4QA5A 3SFFA 4QA4A 4ZUMA 5EF8A 5G13A 1T67A 4CBTA 1C3SA 4RN1A 3EZPA 5EEMA 4QA7A 3MZ6A 4QA6A 4ZUOA 5IX0A 5G12A 3C0YA 2V5XA 5EEIA 2GH6A 3MZ4A 5DC5A 4LXZA 3Q9EA 5THUA 3SFHA 5DC6A 1ZZ0A 2VCGA 5DC7A 3EZTA 5THSA 5EFKB 5EEFA 5G17A 4BKXB 3C10A 4BZ5A 5G3WA 4RN2A 2VQJA 5EFHA 5G0XA 5G11A 3ZNRA 5THTA 3ZNSA 3Q9FA 1ZZ1A 5FCWA 3MZ7A 4QA2A 4ZUNA 5IWGA 2V5WA 5EEKA 2VQVA
chains in the Genus database with same CATH superfamily
4MXRA 3F80A 1HQHA 3MAXA 4Q40A 4RHMA 5G0GA 3F07A 5G1CA 1T4PA 1WOHA 4GWDA 5DC8A 3E8ZA 1HQ5A 4BZ6A 1VKGA 5A2SA 3MZ3A 5BWZA 4IE2A 5G0HA 3RQDA 4Q3RC 4MYLA 1P8SA 5EFBD 5G0IA 5THVA 5ICNB 3E6KA 3THHA 1P8PA 3F06A 1T5FA 2PLLA 3PZLA 4BZ7A 5D1CA 4QA3A 3MMRA 4MYNA 4ZUPA 1C3PA 1HQXA 5G10A 4GWCA 4IE1A 1HQFA 1T69A 4MYFA 1W22A 3RLAA 5D1BA 4Q42A 3GMZA 4IU0A 5EFGA 3LP4A 3LHLA 4QA1A 4HXQA 4BZ8A 2EF4A 1T64A 1T4SA 5LI3A 1P8MA 2VQOA 1WVAA 1P8RA 1PQ3A 4ITYA 2VQMA 4RHJA 3LP7A 3Q9CA 2PHAA 5EF7A 3C0ZA 1R1OA 4ZURA 4HWWA 4RN0A 4FCIA 1D3VA 1RLAA 4IXVA 4Q3TA 4I06A 5G0YA 3TH7A 4Q3UA 5EFJD 4IU1A 4ZUQA 4Q41A 2ZAVA 1ZPEA 3KV2A 1P8NA 5EENA 5D1DA 4IXUA 3SL0A 3MENA 3Q9BA 4LY1A 5G1BA 5G1AA 5G0JA 4CBYA 4RLAA 5FUEA 1P8OA 4RHLA 4FCKA 4IU5A 3F0RA 3EW8A 4HZEA 4CQFA 5JI5A 3MJLA 3E8QA 1T4TA 1TBJA 5EFNA 2VQWG 4BZ9A 1ZZ3A 4GSZA 2VQQA 4A69A 4QA0A 3M1RA 4IU4A 1C3RA 3EWFA 4Q3SA 5RLAA 4QA5A 3SFFA 3THJA 3SJTA 4QA4A 4CEVA 4ZUMA 5EF8A 3TF3A 4RHQA 4GSVA 5G13A 4Q3PA 3E9BA 1T67A 3THEA 2AEBA 4DZ4A 4CBTA 1C3SA 4RN1A 3EZPA 4GSMA 1ZPGA 5EEMA 2PHOA 3DJ8A 2EF5A 4QA7A 3MZ6A 4IE3A 4QA6A 4ZUOA 5IX0A 3NIOA 3E6VA 5G12A 3C0YA 4G3HA 2V5XA 3CEVA 5EEIA 5HJ9A 4RHIA 1GQ7A 1WVBA 3NIQA 2GH6A 3MZ4A 1TBLA 2A0MA 2EIVA 2CEVA 5DC5A 4MYKA 4Q3VA 4RHKA 4Q3QA 4LXZA 3Q9EA 1TA1A 5THUA 3SFHA 5DC6A 1ZZ0A 2VCGA 5DC7A 3EZTA 5THSA 5EFKB 1T4RA 5EEFA 5G17A 4BKXB 3C10A 4BZ5A 1WOIA 5G3WA 4RN2A 2VQJA 5EFHA 5G0XA 5HJAA 1HQGA 5G11A 3ZNRA 1GQ6A 1CEVA 3MFVA 1WOGA 5THTA 3ZNSA 3Q9FA 1T5GA 1TBHA 4Q3RA 1ZZ1A 5FCWA 3SL1A 3NIPA 3MZ7A 4QA2A 4ZUNA 5IWGA 5CEVA 2V5WA 3SKKA 5EEKA 1P8QA 3MFWA 1XFKA 2VQVA 3GN0A 2RLAA
chains in the Genus database with same CATH topology
3MAXA 5G0GA 3F07A 5G1CA 4BZ6A 5DC8A 1VKGA 5A2SA 3MZ3A 5BWZA 5G0HA 3RQDA 5EFBD 5G0IA 5THVA 5ICNB 3F06A 4BZ7A 5D1CA 4QA3A 4ZUPA 1C3PA 5G10A 1T69A 1W22A 5D1BA 5EFGA 4QA1A 4BZ8A 1T64A 5LI3A 2VQOA 2VQMA 3Q9CA 5EF7A 3C0ZA 4ZURA 4RN0A 5G0YA 5EFJD 4ZUQA 5EENA 5D1DA 3MENA 3Q9BA 4LY1A 5G1BA 5G1AA 5G0JA 4CBYA 5FUEA 3F0RA 3EW8A 4CQFA 5JI5A 5EFNA 2VQWG 4BZ9A 1ZZ3A 2VQQA 4A69A 4QA0A 1C3RA 3EWFA 4QA5A 3SFFA 4QA4A 4ZUMA 5EF8A 5G13A 1T67A 4CBTA 1C3SA 4RN1A 3EZPA 5EEMA 4QA7A 3MZ6A 4QA6A 4ZUOA 5IX0A 5G12A 3C0YA 2V5XA 5EEIA 2GH6A 3MZ4A 5DC5A 4LXZA 3Q9EA 5THUA 3SFHA 5DC6A 1ZZ0A 2VCGA 5DC7A 3EZTA 5THSA 5EFKB 5EEFA 5G17A 4BKXB 3C10A 4BZ5A 5G3WA 4RN2A 2VQJA 5EFHA 5G0XA 5G11A 3ZNRA 5THTA 3ZNSA 3Q9FA 1ZZ1A 5FCWA 3MZ7A 4QA2A 4ZUNA 5IWGA 2V5WA 5EEKA 2VQVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAX A;  5G0G A;  3F07 A;  5G1C A;  4BZ6 A;  5DC8 A;  1VKG A;  5A2S A;  3MZ3 A;  5BWZ A;  5G0H A;  3RQD A;  5EFB D;  5G0I A;  5THV A;  5ICN B;  3F06 A;  4BZ7 A;  5D1C A;  4QA3 A;  4ZUP A;  1C3P A;  5G10 A;  1T69 A;  1W22 A;  5D1B A;  5EFG A;  4QA1 A;  4BZ8 A;  1T64 A;  5LI3 A;  2VQO A;  2VQM A;  3Q9C A;  5EF7 A;  3C0Z A;  4ZUR A;  4RN0 A;  5G0Y A;  5EFJ D;  4ZUQ A;  5EEN A;  5D1D A;  3MEN A;  3Q9B A;  4LY1 A;  5G1B A;  5G1A A;  5G0J A;  4CBY A;  5FUE A;  3F0R A;  3EW8 A;  4CQF A;  5JI5 A;  5EFN A;  2VQW G;  4BZ9 A;  1ZZ3 A;  2VQQ A;  4A69 A;  4QA0 A;  1C3R A;  3EWF A;  4QA5 A;  3SFF A;  4QA4 A;  4ZUM A;  5EF8 A;  5G13 A;  1T67 A;  4CBT A;  1C3S A;  4RN1 A;  3EZP A;  5EEM A;  4QA7 A;  3MZ6 A;  4QA6 A;  4ZUO A;  5IX0 A;  5G12 A;  3C0Y A;  2V5X A;  5EEI A;  2GH6 A;  3MZ4 A;  5DC5 A;  4LXZ A;  3Q9E A;  5THU A;  3SFH A;  5DC6 A;  1ZZ0 A;  2VCG A;  5DC7 A;  3EZT A;  5THS A;  5EFK B;  5EEF A;  5G17 A;  4BKX B;  3C10 A;  4BZ5 A;  5G3W A;  4RN2 A;  2VQJ A;  5EFH A;  5G0X A;  5G11 A;  3ZNR A;  5THT A;  3ZNS A;  3Q9F A;  1ZZ1 A;  5FCW A;  3MZ7 A;  4QA2 A;  4ZUN A;  5IWG A;  2V5W A;  5EEK A;  2VQV A; 
#chains in the Genus database with same CATH topology
 4MXR A;  3F80 A;  1HQH A;  3MAX A;  4Q40 A;  4RHM A;  5G0G A;  3F07 A;  5G1C A;  1T4P A;  1WOH A;  4GWD A;  5DC8 A;  3E8Z A;  1HQ5 A;  4BZ6 A;  1VKG A;  5A2S A;  3MZ3 A;  5BWZ A;  4IE2 A;  5G0H A;  3RQD A;  4Q3R C;  4MYL A;  1P8S A;  5EFB D;  5G0I A;  5THV A;  5ICN B;  3E6K A;  3THH A;  1P8P A;  3F06 A;  1T5F A;  2PLL A;  3PZL A;  4BZ7 A;  5D1C A;  4QA3 A;  3MMR A;  4MYN A;  4ZUP A;  1C3P A;  1HQX A;  5G10 A;  4GWC A;  4IE1 A;  1HQF A;  1T69 A;  4MYF A;  1W22 A;  3RLA A;  5D1B A;  4Q42 A;  3GMZ A;  4IU0 A;  5EFG A;  3LP4 A;  3LHL A;  4QA1 A;  4HXQ A;  4BZ8 A;  2EF4 A;  1T64 A;  1T4S A;  5LI3 A;  1P8M A;  2VQO A;  1WVA A;  1P8R A;  1PQ3 A;  4ITY A;  2VQM A;  4RHJ A;  3LP7 A;  3Q9C A;  2PHA A;  5EF7 A;  3C0Z A;  1R1O A;  4ZUR A;  4HWW A;  4RN0 A;  4FCI A;  1D3V A;  1RLA A;  4IXV A;  4Q3T A;  4I06 A;  5G0Y A;  3TH7 A;  4Q3U A;  5EFJ D;  4IU1 A;  4ZUQ A;  4Q41 A;  2ZAV A;  1ZPE A;  3KV2 A;  1P8N A;  5EEN A;  5D1D A;  4IXU A;  3SL0 A;  3MEN A;  3Q9B A;  4LY1 A;  5G1B A;  5G1A A;  5G0J A;  4CBY A;  4RLA A;  5FUE A;  1P8O A;  4RHL A;  4FCK A;  4IU5 A;  3F0R A;  3EW8 A;  4HZE A;  4CQF A;  5JI5 A;  3MJL A;  3E8Q A;  1T4T A;  1TBJ A;  5EFN A;  2VQW G;  4BZ9 A;  1ZZ3 A;  4GSZ A;  2VQQ A;  4A69 A;  4QA0 A;  3M1R A;  4IU4 A;  1C3R A;  3EWF A;  4Q3S A;  5RLA A;  4QA5 A;  3SFF A;  3THJ A;  3SJT A;  4QA4 A;  4CEV A;  4ZUM A;  5EF8 A;  3TF3 A;  4RHQ A;  4GSV A;  5G13 A;  4Q3P A;  3E9B A;  1T67 A;  3THE A;  2AEB A;  4DZ4 A;  4CBT A;  1C3S A;  4RN1 A;  3EZP A;  4GSM A;  1ZPG A;  5EEM A;  2PHO A;  3DJ8 A;  2EF5 A;  4QA7 A;  3MZ6 A;  4IE3 A;  4QA6 A;  4ZUO A;  5IX0 A;  3NIO A;  3E6V A;  5G12 A;  3C0Y A;  4G3H A;  2V5X A;  3CEV A;  5EEI A;  5HJ9 A;  4RHI A;  1GQ7 A;  1WVB A;  3NIQ A;  2GH6 A;  3MZ4 A;  1TBL A;  2A0M A;  2EIV A;  2CEV A;  5DC5 A;  4MYK A;  4Q3V A;  4RHK A;  4Q3Q A;  4LXZ A;  3Q9E A;  1TA1 A;  5THU A;  3SFH A;  5DC6 A;  1ZZ0 A;  2VCG A;  5DC7 A;  3EZT A;  5THS A;  5EFK B;  1T4R A;  5EEF A;  5G17 A;  4BKX B;  3C10 A;  4BZ5 A;  1WOI A;  5G3W A;  4RN2 A;  2VQJ A;  5EFH A;  5G0X A;  5HJA A;  1HQG A;  5G11 A;  3ZNR A;  1GQ6 A;  1CEV A;  3MFV A;  1WOG A;  5THT A;  3ZNS A;  3Q9F A;  1T5G A;  1TBH A;  4Q3R A;  1ZZ1 A;  5FCW A;  3SL1 A;  3NIP A;  3MZ7 A;  4QA2 A;  4ZUN A;  5IWG A;  5CEV A;  2V5W A;  3SKK A;  5EEK A;  1P8Q A;  3MFW A;  1XFK A;  2VQV A;  3GN0 A;  2RLA A; 
#chains in the Genus database with same CATH homology
 3MAX A;  5G0G A;  3F07 A;  5G1C A;  4BZ6 A;  5DC8 A;  1VKG A;  5A2S A;  3MZ3 A;  5BWZ A;  5G0H A;  3RQD A;  5EFB D;  5G0I A;  5THV A;  5ICN B;  3F06 A;  4BZ7 A;  5D1C A;  4QA3 A;  4ZUP A;  1C3P A;  5G10 A;  1T69 A;  1W22 A;  5D1B A;  5EFG A;  4QA1 A;  4BZ8 A;  1T64 A;  5LI3 A;  2VQO A;  2VQM A;  3Q9C A;  5EF7 A;  3C0Z A;  4ZUR A;  4RN0 A;  5G0Y A;  5EFJ D;  4ZUQ A;  5EEN A;  5D1D A;  3MEN A;  3Q9B A;  4LY1 A;  5G1B A;  5G1A A;  5G0J A;  4CBY A;  5FUE A;  3F0R A;  3EW8 A;  4CQF A;  5JI5 A;  5EFN A;  2VQW G;  4BZ9 A;  1ZZ3 A;  2VQQ A;  4A69 A;  4QA0 A;  1C3R A;  3EWF A;  4QA5 A;  3SFF A;  4QA4 A;  4ZUM A;  5EF8 A;  5G13 A;  1T67 A;  4CBT A;  1C3S A;  4RN1 A;  3EZP A;  5EEM A;  4QA7 A;  3MZ6 A;  4QA6 A;  4ZUO A;  5IX0 A;  5G12 A;  3C0Y A;  2V5X A;  5EEI A;  2GH6 A;  3MZ4 A;  5DC5 A;  4LXZ A;  3Q9E A;  5THU A;  3SFH A;  5DC6 A;  1ZZ0 A;  2VCG A;  5DC7 A;  3EZT A;  5THS A;  5EFK B;  5EEF A;  5G17 A;  4BKX B;  3C10 A;  4BZ5 A;  5G3W A;  4RN2 A;  2VQJ A;  5EFH A;  5G0X A;  5G11 A;  3ZNR A;  5THT A;  3ZNS A;  3Q9F A;  1ZZ1 A;  5FCW A;  3MZ7 A;  4QA2 A;  4ZUN A;  5IWG A;  2V5W A;  5EEK A;  2VQV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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