1C3SA

Crystal structure of an hdac homolog complexed with saha
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
372
structure length
372
Chain Sequence
KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERSQSVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords HDLP (HISTONE DEACETYLASE-LIKE PROTEIN)
publication title Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors.
pubmed doi rcsb
source organism Aquifex aeolicus
total genus 125
structure length 372
sequence length 372
ec nomenclature
pdb deposition date 1999-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 1c3sA00
2VQJA 5JI5A 5EENA 5G0IA 2VQQA 5G0JA 5FCWA 5THSA 4BZ6A 5EFJD 5DC7A 5G12A 3SFHA 5BWZA 4ZUPA 5EFHA 5FUEA 4ZURA 4BZ5A 4QA2A 3MZ7A 3EZPA 5EFBD 3MZ6A 5G11A 2VQWG 5EF7A 4BZ7A 4QA3A 5EFKB 3Q9CA 4QA0A 5DC8A 5G0GA 2GH6A 5EF8A 2VCGA 3EW8A 5G10A 5G3WA 5EEFA 2VQVA 4CBYA 3C10A 4A69A 1T64A 1T67A 5LI3A 4RN0A 5EFGA 4ZUOA 5D1BA 5EEIA 4ZUQA 4CBTA 1C3SA 3F0RA 5G1BA 4CQFA 4ZUMA 4QA6A 4BZ8A 4BZ9A 3MAXA 5D1CA 5G0XA 5EEMA 4LXZA 3C0YA 1C3RA 5G1AA 5EEKA 3Q9FA 1ZZ1A 1ZZ3A 5THUA 5G17A 3RQDA 1ZZ0A 2V5XA 3Q9EA 5IX0A 4LY1A 4QA1A 3MZ3A 3ZNRA 4QA7A 5G0YA 1T69A 5A2SA 3Q9BA 3F07A 4RN1A 4ZUNA 4RN2A 3EZTA 3MENA 5D1DA 1C3PA 5DC6A 1VKGA 5G13A 5ICNB 3F06A 2VQOA 2V5WA 3SFFA 5G0HA 4QA4A 4BKXB 5THVA 3C0ZA 5EFNA 3ZNSA 2VQMA 3MZ4A 5THTA 3EWFA 4QA5A 5DC5A 5IWGA 1W22A 5G1CA
chains in the Genus database with same CATH superfamily
2VQJA 5JI5A 5EENA 1HQ5A 5G0IA 2VQQA 1R1OA 5G0JA 5FCWA 3LP7A 4I06A 1P8QA 1HQHA 4IXVA 3NIOA 1TBLA 4GSMA 5THSA 4BZ6A 2ZAVA 5EFJD 5DC7A 5G12A 3SFHA 1D3VA 3SKKA 5BWZA 2PLLA 4ZUPA 2EF4A 5EFHA 2PHAA 1GQ6A 1P8NA 1P8RA 4RHLA 4RHJA 4ZURA 3NIPA 5FUEA 4BZ5A 4Q41A 4Q3SA 2A0MA 1T4PA 3CEVA 4Q40A 4QA2A 3MZ7A 2AEBA 3EZPA 5EFBD 3MZ6A 1GQ7A 3MJLA 4FCKA 2VQWG 5G11A 5EF7A 4BZ7A 4GWCA 4QA3A 4RHIA 5EFKB 5RLAA 3THHA 3Q9CA 4MYFA 1T4SA 4Q42A 4QA0A 5DC8A 2GH6A 1P8SA 1T4RA 4MYNA 2VCGA 3EW8A 5EF8A 5G0GA 5G10A 5G3WA 4MXRA 4G3HA 5EEFA 1ZPEA 2VQVA 1P8OA 4CBYA 3RLAA 4MYLA 3C10A 3E9BA 1HQFA 4A69A 1T64A 3LP4A 3E6KA 1T4TA 3MFVA 4GSVA 1T67A 1TA1A 1WOIA 4HXQA 4IXUA 4GSZA 1PQ3A 4GWDA 4RN0A 5EFGA 5LI3A 4HZEA 4ZUOA 5D1BA 5EEIA 4ZUQA 4CBTA 5HJAA 1C3SA 3SL1A 4Q3RA 3F0RA 5G1BA 4CQFA 4ZUMA 3KV2A 5HJ9A 4Q3PA 4QA6A 2CEVA 3E6VA 3DJ8A 3TH7A 2PHOA 4BZ8A 3MAXA 4BZ9A 5D1CA 1RLAA 3PZLA 5G0XA 5EEMA 4IU1A 4LXZA 4Q3UA 3C0YA 1C3RA 2EF5A 4RHQA 4MYKA 1WVAA 4IU0A 5G1AA 5EEKA 3Q9FA 1ZZ1A 3GMZA 1ZZ3A 5THUA 5G17A 3RQDA 1ZZ0A 3THEA 2V5XA 3GN0A 3Q9EA 4IE3A 5IX0A 1WOHA 1P8PA 4LY1A 4QA1A 3MZ3A 3ZNRA 4DZ4A 4Q3RC 4QA7A 4Q3VA 1T69A 3MMRA 5G0YA 5A2SA 1T5FA 3M1RA 3Q9BA 3F07A 4RN1A 4IE1A 4ZUNA 4RN2A 3E8ZA 4RHKA 3EZTA 3MENA 4Q3TA 1T5GA 1C3PA 4Q3QA 5D1DA 5DC6A 1VKGA 5G13A 5ICNB 3F06A 2VQOA 1TBHA 2V5WA 3SFFA 5G0HA 4CEVA 3F80A 1ZPGA 1HQGA 4QA4A 3SL0A 4HWWA 5THVA 4BKXB 3C0ZA 5EFNA 3THJA 3NIQA 4IU5A 2RLAA 1P8MA 4FCIA 3ZNSA 4RHMA 2VQMA 1XFKA 4RLAA 1CEVA 3MZ4A 3SJTA 1WVBA 3MFWA 3TF3A 3LHLA 1HQXA 4IE2A 1TBJA 1WOGA 4ITYA 3EWFA 5THTA 3E8QA 4QA5A 5DC5A 5IWGA 1W22A 5CEVA 2EIVA 4IU4A 5G1CA
chains in the Genus database with same CATH topology
2VQJA 5JI5A 5EENA 5G0IA 2VQQA 5G0JA 5FCWA 5THSA 4BZ6A 5EFJD 5DC7A 5G12A 3SFHA 5BWZA 4ZUPA 5EFHA 5FUEA 4ZURA 4BZ5A 4QA2A 3MZ7A 3EZPA 5EFBD 3MZ6A 5G11A 2VQWG 5EF7A 4BZ7A 4QA3A 5EFKB 3Q9CA 4QA0A 5DC8A 5G0GA 2GH6A 5EF8A 2VCGA 3EW8A 5G10A 5G3WA 5EEFA 2VQVA 4CBYA 3C10A 4A69A 1T64A 1T67A 5LI3A 4RN0A 5EFGA 4ZUOA 5D1BA 5EEIA 4ZUQA 4CBTA 1C3SA 3F0RA 5G1BA 4CQFA 4ZUMA 4QA6A 4BZ8A 4BZ9A 3MAXA 5D1CA 5G0XA 5EEMA 4LXZA 3C0YA 1C3RA 5G1AA 5EEKA 3Q9FA 1ZZ1A 1ZZ3A 5THUA 5G17A 3RQDA 1ZZ0A 2V5XA 3Q9EA 5IX0A 4LY1A 4QA1A 3MZ3A 3ZNRA 4QA7A 5G0YA 1T69A 5A2SA 3Q9BA 3F07A 4RN1A 4ZUNA 4RN2A 3EZTA 3MENA 5D1DA 1C3PA 5DC6A 1VKGA 5G13A 5ICNB 3F06A 2VQOA 2V5WA 3SFFA 5G0HA 4QA4A 4BKXB 5THVA 3C0ZA 5EFNA 3ZNSA 2VQMA 3MZ4A 5THTA 3EWFA 4QA5A 5DC5A 5IWGA 1W22A 5G1CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VQJ A;  5JI5 A;  5EEN A;  5G0I A;  2VQQ A;  5G0J A;  5FCW A;  5THS A;  4BZ6 A;  5EFJ D;  5DC7 A;  5G12 A;  3SFH A;  5BWZ A;  4ZUP A;  5EFH A;  5FUE A;  4ZUR A;  4BZ5 A;  4QA2 A;  3MZ7 A;  3EZP A;  5EFB D;  3MZ6 A;  5G11 A;  2VQW G;  5EF7 A;  4BZ7 A;  4QA3 A;  5EFK B;  3Q9C A;  4QA0 A;  5DC8 A;  5G0G A;  2GH6 A;  5EF8 A;  2VCG A;  3EW8 A;  5G10 A;  5G3W A;  5EEF A;  2VQV A;  4CBY A;  3C10 A;  4A69 A;  1T64 A;  1T67 A;  5LI3 A;  4RN0 A;  5EFG A;  4ZUO A;  5D1B A;  5EEI A;  4ZUQ A;  4CBT A;  1C3S A;  3F0R A;  5G1B A;  4CQF A;  4ZUM A;  4QA6 A;  4BZ8 A;  4BZ9 A;  3MAX A;  5D1C A;  5G0X A;  5EEM A;  4LXZ A;  3C0Y A;  1C3R A;  5G1A A;  5EEK A;  3Q9F A;  1ZZ1 A;  1ZZ3 A;  5THU A;  5G17 A;  3RQD A;  1ZZ0 A;  2V5X A;  3Q9E A;  5IX0 A;  4LY1 A;  4QA1 A;  3MZ3 A;  3ZNR A;  4QA7 A;  5G0Y A;  1T69 A;  5A2S A;  3Q9B A;  3F07 A;  4RN1 A;  4ZUN A;  4RN2 A;  3EZT A;  3MEN A;  5D1D A;  1C3P A;  5DC6 A;  1VKG A;  5G13 A;  5ICN B;  3F06 A;  2VQO A;  2V5W A;  3SFF A;  5G0H A;  4QA4 A;  4BKX B;  5THV A;  3C0Z A;  5EFN A;  3ZNS A;  2VQM A;  3MZ4 A;  5THT A;  3EWF A;  4QA5 A;  5DC5 A;  5IWG A;  1W22 A;  5G1C A; 
#chains in the Genus database with same CATH topology
 2VQJ A;  5JI5 A;  5EEN A;  1HQ5 A;  5G0I A;  2VQQ A;  1R1O A;  5G0J A;  5FCW A;  3LP7 A;  4I06 A;  1P8Q A;  1HQH A;  4IXV A;  3NIO A;  1TBL A;  4GSM A;  5THS A;  4BZ6 A;  2ZAV A;  5EFJ D;  5DC7 A;  5G12 A;  3SFH A;  1D3V A;  3SKK A;  5BWZ A;  2PLL A;  4ZUP A;  2EF4 A;  5EFH A;  2PHA A;  1GQ6 A;  1P8N A;  1P8R A;  4RHL A;  4RHJ A;  4ZUR A;  3NIP A;  5FUE A;  4BZ5 A;  4Q41 A;  4Q3S A;  2A0M A;  1T4P A;  3CEV A;  4Q40 A;  4QA2 A;  3MZ7 A;  2AEB A;  3EZP A;  5EFB D;  3MZ6 A;  1GQ7 A;  3MJL A;  4FCK A;  2VQW G;  5G11 A;  5EF7 A;  4BZ7 A;  4GWC A;  4QA3 A;  4RHI A;  5EFK B;  5RLA A;  3THH A;  3Q9C A;  4MYF A;  1T4S A;  4Q42 A;  4QA0 A;  5DC8 A;  2GH6 A;  1P8S A;  1T4R A;  4MYN A;  2VCG A;  3EW8 A;  5EF8 A;  5G0G A;  5G10 A;  5G3W A;  4MXR A;  4G3H A;  5EEF A;  1ZPE A;  2VQV A;  1P8O A;  4CBY A;  3RLA A;  4MYL A;  3C10 A;  3E9B A;  1HQF A;  4A69 A;  1T64 A;  3LP4 A;  3E6K A;  1T4T A;  3MFV A;  4GSV A;  1T67 A;  1TA1 A;  1WOI A;  4HXQ A;  4IXU A;  4GSZ A;  1PQ3 A;  4GWD A;  4RN0 A;  5EFG A;  5LI3 A;  4HZE A;  4ZUO A;  5D1B A;  5EEI A;  4ZUQ A;  4CBT A;  5HJA A;  1C3S A;  3SL1 A;  4Q3R A;  3F0R A;  5G1B A;  4CQF A;  4ZUM A;  3KV2 A;  5HJ9 A;  4Q3P A;  4QA6 A;  2CEV A;  3E6V A;  3DJ8 A;  3TH7 A;  2PHO A;  4BZ8 A;  3MAX A;  4BZ9 A;  5D1C A;  1RLA A;  3PZL A;  5G0X A;  5EEM A;  4IU1 A;  4LXZ A;  4Q3U A;  3C0Y A;  1C3R A;  2EF5 A;  4RHQ A;  4MYK A;  1WVA A;  4IU0 A;  5G1A A;  5EEK A;  3Q9F A;  1ZZ1 A;  3GMZ A;  1ZZ3 A;  5THU A;  5G17 A;  3RQD A;  1ZZ0 A;  3THE A;  2V5X A;  3GN0 A;  3Q9E A;  4IE3 A;  5IX0 A;  1WOH A;  1P8P A;  4LY1 A;  4QA1 A;  3MZ3 A;  3ZNR A;  4DZ4 A;  4Q3R C;  4QA7 A;  4Q3V A;  1T69 A;  3MMR A;  5G0Y A;  5A2S A;  1T5F A;  3M1R A;  3Q9B A;  3F07 A;  4RN1 A;  4IE1 A;  4ZUN A;  4RN2 A;  3E8Z A;  4RHK A;  3EZT A;  3MEN A;  4Q3T A;  1T5G A;  1C3P A;  4Q3Q A;  5D1D A;  5DC6 A;  1VKG A;  5G13 A;  5ICN B;  3F06 A;  2VQO A;  1TBH A;  2V5W A;  3SFF A;  5G0H A;  4CEV A;  3F80 A;  1ZPG A;  1HQG A;  4QA4 A;  3SL0 A;  4HWW A;  5THV A;  4BKX B;  3C0Z A;  5EFN A;  3THJ A;  3NIQ A;  4IU5 A;  2RLA A;  1P8M A;  4FCI A;  3ZNS A;  4RHM A;  2VQM A;  1XFK A;  4RLA A;  1CEV A;  3MZ4 A;  3SJT A;  1WVB A;  3MFW A;  3TF3 A;  3LHL A;  1HQX A;  4IE2 A;  1TBJ A;  1WOG A;  4ITY A;  3EWF A;  5THT A;  3E8Q A;  4QA5 A;  5DC5 A;  5IWG A;  1W22 A;  5CEV A;  2EIV A;  4IU4 A;  5G1C A; 
#chains in the Genus database with same CATH homology
 2VQJ A;  5JI5 A;  5EEN A;  5G0I A;  2VQQ A;  5G0J A;  5FCW A;  5THS A;  4BZ6 A;  5EFJ D;  5DC7 A;  5G12 A;  3SFH A;  5BWZ A;  4ZUP A;  5EFH A;  5FUE A;  4ZUR A;  4BZ5 A;  4QA2 A;  3MZ7 A;  3EZP A;  5EFB D;  3MZ6 A;  5G11 A;  2VQW G;  5EF7 A;  4BZ7 A;  4QA3 A;  5EFK B;  3Q9C A;  4QA0 A;  5DC8 A;  5G0G A;  2GH6 A;  5EF8 A;  2VCG A;  3EW8 A;  5G10 A;  5G3W A;  5EEF A;  2VQV A;  4CBY A;  3C10 A;  4A69 A;  1T64 A;  1T67 A;  5LI3 A;  4RN0 A;  5EFG A;  4ZUO A;  5D1B A;  5EEI A;  4ZUQ A;  4CBT A;  1C3S A;  3F0R A;  5G1B A;  4CQF A;  4ZUM A;  4QA6 A;  4BZ8 A;  4BZ9 A;  3MAX A;  5D1C A;  5G0X A;  5EEM A;  4LXZ A;  3C0Y A;  1C3R A;  5G1A A;  5EEK A;  3Q9F A;  1ZZ1 A;  1ZZ3 A;  5THU A;  5G17 A;  3RQD A;  1ZZ0 A;  2V5X A;  3Q9E A;  5IX0 A;  4LY1 A;  4QA1 A;  3MZ3 A;  3ZNR A;  4QA7 A;  5G0Y A;  1T69 A;  5A2S A;  3Q9B A;  3F07 A;  4RN1 A;  4ZUN A;  4RN2 A;  3EZT A;  3MEN A;  5D1D A;  1C3P A;  5DC6 A;  1VKG A;  5G13 A;  5ICN B;  3F06 A;  2VQO A;  2V5W A;  3SFF A;  5G0H A;  4QA4 A;  4BKX B;  5THV A;  3C0Z A;  5EFN A;  3ZNS A;  2VQM A;  3MZ4 A;  5THT A;  3EWF A;  4QA5 A;  5DC5 A;  5IWG A;  1W22 A;  5G1C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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