1D0NA

The crystal structure of calcium-free equine plasma gelsolin.
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
729
structure length
729
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWSVDPLDRALAELAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Contractile protein
molecule keywords HORSE PLASMA GELSOLIN
publication title The crystal structure of plasma gelsolin: implications for actin severing, capping, and nucleation.
pubmed doi rcsb
total genus 198
structure length 729
sequence length 729
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA04
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA06
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA05
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1d0nA03
3EH1A 2VIKA 3TU5B 5HVKB 1TMWA 1RGIG 1YAGG 1ESVS 5KYUA 3CI5G 1T3XA 3EGXA 1WNJA 2LLFA 1AK6A 3A5OS 1P8XA 1C0GS 1M2OA 4S10C 5HVKD 1NM1G 3CIPG 1NMDG 2MP4A 3EFOA 2MV2A 1PD0A 2VACA 1WFSA 2FH3A 2NUPA 4JD2H 1EQYS 1YVNG 4PKIG 1HQZ1 1T44G 5A1MA 3EG9A 2LJ8A 1AK7A 1V6FA 4KEFA 1TVJA 3L50A 5KYNA 3FFNA 3EFOB 1Q8GA 4LIZA 1SVQA 2NUPB 1J72A 1JHWA 1VKKA 3EG9B 5IVUA 1H1VG 5L6WC 1T2LA 1NLVG 1D4XG 1VFQA 2L72A 4CBUG 3EGDB 5KYYB 1MDUA 2FH2A 5KYWA 3CJCG 1CNUA 1NPHA 2XF1A 1X67A 3A5MS 1P8ZG 2XFAA 3A5NS 3DAWB 1KCQA 2FGHA 4BEX1 1CFYA 1M2VA 5KYWB 4PKHB 5DD2A 2NUTA 3EGDA 5KYYA 1C0FS 3CJBG 1AHQA 2I2QA 2HD7A 4PKGG 3FFKA 5FAEA 4KEEA 2QTVA 1M4JA 4KEDA 1M2VB 1SVRA 4CBXG 1Q8XA 2NUTB 3EH2A 2KVKA 1T3YA 1SVYA 3FG6A 4CBWG 5KYXA 1UDMA 3A5LS 1D0NA 4Z94G 1PD1A 3Q2BA 5FAFA 1COFA 1PCXA 5KYXB 1DEJS 1QPVA 2FH1A 2LXXA 3FG7A 1WM4A 2FH4A 5KYUB 2D8BA 2W0IA 2MOTA 3EGXB 2VILA 2FF6G 1F7SA 2FF3A
chains in the Genus database with same CATH superfamily
3EH1A 2VIKA 3TU5B 5HVKB 1TMWA 1RGIG 1YAGG 1ESVS 5KYUA 3CI5G 1T3XA 3EGXA 1WNJA 2LLFA 1AK6A 3DA7A 3A5OS 1P8XA 1C0GS 1M2OA 4S10C 5HVKD 1NM1G 3CIPG 1NMDG 2MP4A 3EFOA 2MV2A 1PD0A 2VACA 1WFSA 2FH3A 2NUPA 4JD2H 1EQYS 1YVNG 4PKIG 1HQZ1 1T44G 5A1MA 3EG9A 2LJ8A 1AK7A 1V6FA 4KEFA 1TVJA 3L50A 5KYNA 3FFNA 3EFOB 1Q8GA 4LIZA 1SVQA 2NUPB 1J72A 1JHWA 1VKKA 3EG9B 5IVUA 1H1VG 5L6WC 1T2LA 1NLVG 1D4XG 1VFQA 2L72A 4CBUG 3EGDB 5KYYB 1MDUA 2FH2A 5KYWA 3CJCG 1CNUA 1NPHA 2XF1A 1X67A 3A5MS 1P8ZG 2XFAA 3A5NS 3DAWB 1KCQA 2FGHA 4BEX1 1CFYA 1M2VA 5KYWB 4PKHB 5DD2A 2NUTA 3EGDA 5KYYA 1C0FS 3CJBG 1AHQA 2I2QA 2HD7A 4PKGG 3FFKA 5FAEA 4KEEA 2QTVA 1M4JA 4KEDA 1M2VB 1SVRA 4CBXG 1Q8XA 2NUTB 3EH2A 2KVKA 1T3YA 1SVYA 3FG6A 4CBWG 5KYXA 1UDMA 3A5LS 1D0NA 4Z94G 1PD1A 3Q2BA 5FAFA 1COFA 1PCXA 5KYXB 1DEJS 1QPVA 2FH1A 2LXXA 3FG7A 1WM4A 2FH4A 5KYUB 2D8BA 2W0IA 2MOTA 3EGXB 2VILA 2FF6G 1F7SA 2FF3A
chains in the Genus database with same CATH topology
3EH1A 2VIKA 3TU5B 5HVKB 1TMWA 1RGIG 1YAGG 1ESVS 5KYUA 3CI5G 1T3XA 3EGXA 1WNJA 2LLFA 1AK6A 3DA7A 3A5OS 1P8XA 1C0GS 1M2OA 4S10C 5HVKD 1NM1G 3CIPG 1NMDG 2MP4A 3EFOA 2MV2A 1PD0A 2VACA 1WFSA 2FH3A 2NUPA 4JD2H 1EQYS 1YVNG 4PKIG 1HQZ1 1T44G 5A1MA 3EG9A 2LJ8A 1AK7A 1V6FA 4KEFA 1TVJA 3L50A 5KYNA 3FFNA 3EFOB 1Q8GA 4LIZA 1SVQA 2NUPB 1J72A 1JHWA 1VKKA 3EG9B 5IVUA 1H1VG 5L6WC 1T2LA 1NLVG 1D4XG 1VFQA 2L72A 4CBUG 3EGDB 5KYYB 1MDUA 2FH2A 5KYWA 3CJCG 1CNUA 1NPHA 2XF1A 1X67A 3A5MS 1P8ZG 2XFAA 3A5NS 3DAWB 1KCQA 2FGHA 4BEX1 1CFYA 1M2VA 5KYWB 4PKHB 5DD2A 2NUTA 3EGDA 5KYYA 1C0FS 3CJBG 1AHQA 2I2QA 2HD7A 4PKGG 3FFKA 5FAEA 4KEEA 2QTVA 1M4JA 4KEDA 1M2VB 1SVRA 4CBXG 1Q8XA 2NUTB 3EH2A 2KVKA 1T3YA 1SVYA 3FG6A 4CBWG 5KYXA 1UDMA 3A5LS 1D0NA 4Z94G 1PD1A 3Q2BA 5FAFA 1COFA 1PCXA 5KYXB 1DEJS 1QPVA 2FH1A 2LXXA 3FG7A 1WM4A 2FH4A 5KYUB 2D8BA 2W0IA 2MOTA 3EGXB 2VILA 2FF6G 1F7SA 2FF3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EH1 A;  2VIK A;  3TU5 B;  5HVK B;  1TMW A;  1RGI G;  1YAG G;  1ESV S;  5KYU A;  3CI5 G;  1T3X A;  3EGX A;  1WNJ A;  2LLF A;  1AK6 A;  3A5O S;  1P8X A;  1C0G S;  1M2O A;  4S10 C;  5HVK D;  1NM1 G;  3CIP G;  1NMD G;  2MP4 A;  3EFO A;  2MV2 A;  1PD0 A;  2VAC A;  1WFS A;  2FH3 A;  2NUP A;  4JD2 H;  1EQY S;  1YVN G;  4PKI G;  1HQZ 1;  1T44 G;  5A1M A;  3EG9 A;  2LJ8 A;  1AK7 A;  1V6F A;  4KEF A;  1TVJ A;  3L50 A;  5KYN A;  3FFN A;  3EFO B;  1Q8G A;  4LIZ A;  1SVQ A;  2NUP B;  1J72 A;  1JHW A;  1VKK A;  3EG9 B;  5IVU A;  1H1V G;  5L6W C;  1T2L A;  1NLV G;  1D4X G;  1VFQ A;  2L72 A;  4CBU G;  3EGD B;  5KYY B;  1MDU A;  2FH2 A;  5KYW A;  3CJC G;  1CNU A;  1NPH A;  2XF1 A;  1X67 A;  3A5M S;  1P8Z G;  2XFA A;  3A5N S;  3DAW B;  1KCQ A;  2FGH A;  4BEX 1;  1CFY A;  1M2V A;  5KYW B;  4PKH B;  5DD2 A;  2NUT A;  3EGD A;  5KYY A;  1C0F S;  3CJB G;  1AHQ A;  2I2Q A;  2HD7 A;  4PKG G;  3FFK A;  5FAE A;  4KEE A;  2QTV A;  1M4J A;  4KED A;  1M2V B;  1SVR A;  4CBX G;  1Q8X A;  2NUT B;  3EH2 A;  2KVK A;  1T3Y A;  1SVY A;  3FG6 A;  4CBW G;  5KYX A;  1UDM A;  3A5L S;  1D0N A;  4Z94 G;  1PD1 A;  3Q2B A;  5FAF A;  1COF A;  1PCX A;  5KYX B;  1DEJ S;  1QPV A;  2FH1 A;  2LXX A;  3FG7 A;  1WM4 A;  2FH4 A;  5KYU B;  2D8B A;  2W0I A;  2MOT A;  3EGX B;  2VIL A;  2FF6 G;  1F7S A;  2FF3 A; 
#chains in the Genus database with same CATH topology
 3EH1 A;  2VIK A;  3TU5 B;  5HVK B;  1TMW A;  1RGI G;  1YAG G;  1ESV S;  5KYU A;  3CI5 G;  1T3X A;  3EGX A;  1WNJ A;  2LLF A;  1AK6 A;  3DA7 A;  3A5O S;  1P8X A;  1C0G S;  1M2O A;  4S10 C;  5HVK D;  1NM1 G;  3CIP G;  1NMD G;  2MP4 A;  3EFO A;  2MV2 A;  1PD0 A;  2VAC A;  1WFS A;  2FH3 A;  2NUP A;  4JD2 H;  1EQY S;  1YVN G;  4PKI G;  1HQZ 1;  1T44 G;  5A1M A;  3EG9 A;  2LJ8 A;  1AK7 A;  1V6F A;  4KEF A;  1TVJ A;  3L50 A;  5KYN A;  3FFN A;  3EFO B;  1Q8G A;  4LIZ A;  1SVQ A;  2NUP B;  1J72 A;  1JHW A;  1VKK A;  3EG9 B;  5IVU A;  1H1V G;  5L6W C;  1T2L A;  1NLV G;  1D4X G;  1VFQ A;  2L72 A;  4CBU G;  3EGD B;  5KYY B;  1MDU A;  2FH2 A;  5KYW A;  3CJC G;  1CNU A;  1NPH A;  2XF1 A;  1X67 A;  3A5M S;  1P8Z G;  2XFA A;  3A5N S;  3DAW B;  1KCQ A;  2FGH A;  4BEX 1;  1CFY A;  1M2V A;  5KYW B;  4PKH B;  5DD2 A;  2NUT A;  3EGD A;  5KYY A;  1C0F S;  3CJB G;  1AHQ A;  2I2Q A;  2HD7 A;  4PKG G;  3FFK A;  5FAE A;  4KEE A;  2QTV A;  1M4J A;  4KED A;  1M2V B;  1SVR A;  4CBX G;  1Q8X A;  2NUT B;  3EH2 A;  2KVK A;  1T3Y A;  1SVY A;  3FG6 A;  4CBW G;  5KYX A;  1UDM A;  3A5L S;  1D0N A;  4Z94 G;  1PD1 A;  3Q2B A;  5FAF A;  1COF A;  1PCX A;  5KYX B;  1DEJ S;  1QPV A;  2FH1 A;  2LXX A;  3FG7 A;  1WM4 A;  2FH4 A;  5KYU B;  2D8B A;  2W0I A;  2MOT A;  3EGX B;  2VIL A;  2FF6 G;  1F7S A;  2FF3 A; 
#chains in the Genus database with same CATH homology
 3EH1 A;  2VIK A;  3TU5 B;  5HVK B;  1TMW A;  1RGI G;  1YAG G;  1ESV S;  5KYU A;  3CI5 G;  1T3X A;  3EGX A;  1WNJ A;  2LLF A;  1AK6 A;  3DA7 A;  3A5O S;  1P8X A;  1C0G S;  1M2O A;  4S10 C;  5HVK D;  1NM1 G;  3CIP G;  1NMD G;  2MP4 A;  3EFO A;  2MV2 A;  1PD0 A;  2VAC A;  1WFS A;  2FH3 A;  2NUP A;  4JD2 H;  1EQY S;  1YVN G;  4PKI G;  1HQZ 1;  1T44 G;  5A1M A;  3EG9 A;  2LJ8 A;  1AK7 A;  1V6F A;  4KEF A;  1TVJ A;  3L50 A;  5KYN A;  3FFN A;  3EFO B;  1Q8G A;  4LIZ A;  1SVQ A;  2NUP B;  1J72 A;  1JHW A;  1VKK A;  3EG9 B;  5IVU A;  1H1V G;  5L6W C;  1T2L A;  1NLV G;  1D4X G;  1VFQ A;  2L72 A;  4CBU G;  3EGD B;  5KYY B;  1MDU A;  2FH2 A;  5KYW A;  3CJC G;  1CNU A;  1NPH A;  2XF1 A;  1X67 A;  3A5M S;  1P8Z G;  2XFA A;  3A5N S;  3DAW B;  1KCQ A;  2FGH A;  4BEX 1;  1CFY A;  1M2V A;  5KYW B;  4PKH B;  5DD2 A;  2NUT A;  3EGD A;  5KYY A;  1C0F S;  3CJB G;  1AHQ A;  2I2Q A;  2HD7 A;  4PKG G;  3FFK A;  5FAE A;  4KEE A;  2QTV A;  1M4J A;  4KED A;  1M2V B;  1SVR A;  4CBX G;  1Q8X A;  2NUT B;  3EH2 A;  2KVK A;  1T3Y A;  1SVY A;  3FG6 A;  4CBW G;  5KYX A;  1UDM A;  3A5L S;  1D0N A;  4Z94 G;  1PD1 A;  3Q2B A;  5FAF A;  1COF A;  1PCX A;  5KYX B;  1DEJ S;  1QPV A;  2FH1 A;  2LXX A;  3FG7 A;  1WM4 A;  2FH4 A;  5KYU B;  2D8B A;  2W0I A;  2MOT A;  3EGX B;  2VIL A;  2FF6 G;  1F7S A;  2FF3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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