1D2ZA

Three-dimensional structure of a complex between the death domains of pelle and tube
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
102
structure length
102
Chain Sequence
LDNTMAIRLLPLPVRAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords DEATH DOMAIN OF PELLE
publication title Three-dimensional structure of a complex between the death domains of Pelle and Tube.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 38
structure length 102
sequence length 102
chains with identical sequence C
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 1999-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1d2zA00
2YQFA 2MB9A 4JQWA 1WH4A 2N97A 1C15A 3T6PA 4JUPA 2MPCA 3YGSC 2NZ7A 4FH0A 2P1HA 2L6AA 2YU0A 4N1JA 4I16A 3J63A 2DBDA 4F44A 3KATA 4IZ7B 1DGNA 3YGSP 4QOBA 2G7RA 2LS7A 2BBZA 4A2WA 2N00A 4UZ0A 1E3YA 1PN5A 2L9MA 1A1WA 3CL3A 3QF2A 2YVIA 1CWWA 1NGRA 1D2ZA 2DBHA 4M9SA 3MOPK 2VGQA 4A2QA 3EZQA 4DWNA 4NQKA 2MS8A 2N80A 1UCPA 1YGOA 2HM2Q 2A5YB 3MOPG 2N1FA 2MS7A 4O7QA 4M9XA 4O9LA 4N1LA 2M5VA 2KN6A 2O71A 4RHWA 4D8OA 1DDFA 2GF5A 4F42A 1E41A 2DO9A 4M9ZA 4ZBWA 2LWEA 2DBFA 2KM6A 4P4HI 2NAQA 2B1WA 4N1KA 4IZ5E 1Z6TA 4O6XA 3LQRA 2IB1A 2D96A 1D2ZB 3MOPA 2DBGA 3CRDA 2F1SA 2N83A 1WXPA 1CY5A 3EZQB 4O9FA 2BBRA 2OF5A 4P4HA 1A1ZA 1FADA 3J6JA 2MN4A 2N7ZA 2OF5H 2NSNA 1N3KA 4EWIA 4IZAB 2A9IA 2YGSA 4RHWE 1WMGA 4E9MA 4LWDA 2LWDA 1ICHA 3LQQA
chains in the Genus database with same CATH superfamily
2YQFA 2MB9A 4JQWA 1WH4A 2MJMA 2N97A 1C15A 3T6PA 4JUPA 2MPCA 3YGSC 2NZ7A 4FH0A 2P1HA 2L6AA 2YU0A 4N1JA 4I16A 3J63A 2DBDA 4F44A 3KATA 4IZ7B 1DGNA 3YGSP 4QOBA 2G7RA 2LS7A 2BBZA 4A2WA 2N00A 4UZ0A 1E3YA 1PN5A 2L9MA 1A1WA 3CL3A 3QF2A 2YVIA 1CWWA 1NGRA 1D2ZA 2DBHA 4M9SA 3MOPK 2VGQA 4A2QA 3EZQA 4DWNA 4NQKA 2MS8A 2N80A 1UCPA 1YGOA 2HM2Q 2A5YB 3MOPG 2N1FA 2MS7A 4O7QA 4M9XA 4O9LA 4N1LA 2M5VA 2KN6A 2O71A 4RHWA 4D8OA 1DDFA 2GF5A 4F42A 1E41A 2DO9A 4M9ZA 4ZBWA 2LWEA 2DBFA 2KM6A 4P4HI 2NAQA 2B1WA 4N1KA 4IZ5E 1Z6TA 4O6XA 3LQRA 2IB1A 2D96A 1D2ZB 3MOPA 2DBGA 3CRDA 2F1SA 2N83A 1WXPA 1CY5A 2XV9A 3EZQB 4O9FA 2BBRA 2OF5A 4P4HA 1A1ZA 1FADA 3J6JA 2MN4A 2N7ZA 2OF5H 2NSNA 1N3KA 4EWIA 4IZAB 2A9IA 2YGSA 4RHWE 1WMGA 4E9MA 4LWDA 2LWDA 1ICHA 3LQQA
chains in the Genus database with same CATH topology
2YQFA 2MB9A 4JQWA 1WH4A 2MJMA 2N97A 1C15A 3T6PA 4JUPA 2MPCA 3YGSC 2NZ7A 4FH0A 2P1HA 2L6AA 2YU0A 4N1JA 4I16A 3J63A 2DBDA 4F44A 3KATA 4IZ7B 1DGNA 3YGSP 4QOBA 2G7RA 2LS7A 2BBZA 4A2WA 2N00A 4UZ0A 1E3YA 1PN5A 2L9MA 1A1WA 3CL3A 3QF2A 2YVIA 1CWWA 1NGRA 1D2ZA 2DBHA 4M9SA 3MOPK 2VGQA 4A2QA 3EZQA 4DWNA 4NQKA 2MS8A 2N80A 1UCPA 1YGOA 2HM2Q 2A5YB 3MOPG 2N1FA 2MS7A 4O7QA 4M9XA 4O9LA 4N1LA 2M5VA 2KN6A 2O71A 4RHWA 4D8OA 1DDFA 2GF5A 4F42A 1E41A 2DO9A 4M9ZA 4ZBWA 2LWEA 2DBFA 2KM6A 4P4HI 2NAQA 2B1WA 4N1KA 4IZ5E 1Z6TA 4O6XA 3LQRA 2IB1A 2D96A 1D2ZB 3MOPA 2DBGA 3CRDA 2F1SA 2N83A 1WXPA 1CY5A 2XV9A 3EZQB 4O9FA 2BBRA 2OF5A 4P4HA 1A1ZA 1FADA 3J6JA 2MN4A 2N7ZA 2OF5H 2NSNA 1N3KA 4EWIA 4IZAB 2A9IA 2YGSA 4RHWE 1WMGA 4E9MA 4LWDA 2LWDA 1ICHA 3LQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YQF A;  2MB9 A;  4JQW A;  1WH4 A;  2N97 A;  1C15 A;  3T6P A;  4JUP A;  2MPC A;  3YGS C;  2NZ7 A;  4FH0 A;  2P1H A;  2L6A A;  2YU0 A;  4N1J A;  4I16 A;  3J63 A;  2DBD A;  4F44 A;  3KAT A;  4IZ7 B;  1DGN A;  3YGS P;  4QOB A;  2G7R A;  2LS7 A;  2BBZ A;  4A2W A;  2N00 A;  4UZ0 A;  1E3Y A;  1PN5 A;  2L9M A;  1A1W A;  3CL3 A;  3QF2 A;  2YVI A;  1CWW A;  1NGR A;  1D2Z A;  2DBH A;  4M9S A;  3MOP K;  2VGQ A;  4A2Q A;  3EZQ A;  4DWN A;  4NQK A;  2MS8 A;  2N80 A;  1UCP A;  1YGO A;  2HM2 Q;  2A5Y B;  3MOP G;  2N1F A;  2MS7 A;  4O7Q A;  4M9X A;  4O9L A;  4N1L A;  2M5V A;  2KN6 A;  2O71 A;  4RHW A;  4D8O A;  1DDF A;  2GF5 A;  4F42 A;  1E41 A;  2DO9 A;  4M9Z A;  4ZBW A;  2LWE A;  2DBF A;  2KM6 A;  4P4H I;  2NAQ A;  2B1W A;  4N1K A;  4IZ5 E;  1Z6T A;  4O6X A;  3LQR A;  2IB1 A;  2D96 A;  1D2Z B;  3MOP A;  2DBG A;  3CRD A;  2F1S A;  2N83 A;  1WXP A;  1CY5 A;  3EZQ B;  4O9F A;  2BBR A;  2OF5 A;  4P4H A;  1A1Z A;  1FAD A;  3J6J A;  2MN4 A;  2N7Z A;  2OF5 H;  2NSN A;  1N3K A;  4EWI A;  4IZA B;  2A9I A;  2YGS A;  4RHW E;  1WMG A;  4E9M A;  4LWD A;  2LWD A;  1ICH A;  3LQQ A; 
#chains in the Genus database with same CATH topology
 2YQF A;  2MB9 A;  4JQW A;  1WH4 A;  2MJM A;  2N97 A;  1C15 A;  3T6P A;  4JUP A;  2MPC A;  3YGS C;  2NZ7 A;  4FH0 A;  2P1H A;  2L6A A;  2YU0 A;  4N1J A;  4I16 A;  3J63 A;  2DBD A;  4F44 A;  3KAT A;  4IZ7 B;  1DGN A;  3YGS P;  4QOB A;  2G7R A;  2LS7 A;  2BBZ A;  4A2W A;  2N00 A;  4UZ0 A;  1E3Y A;  1PN5 A;  2L9M A;  1A1W A;  3CL3 A;  3QF2 A;  2YVI A;  1CWW A;  1NGR A;  1D2Z A;  2DBH A;  4M9S A;  3MOP K;  2VGQ A;  4A2Q A;  3EZQ A;  4DWN A;  4NQK A;  2MS8 A;  2N80 A;  1UCP A;  1YGO A;  2HM2 Q;  2A5Y B;  3MOP G;  2N1F A;  2MS7 A;  4O7Q A;  4M9X A;  4O9L A;  4N1L A;  2M5V A;  2KN6 A;  2O71 A;  4RHW A;  4D8O A;  1DDF A;  2GF5 A;  4F42 A;  1E41 A;  2DO9 A;  4M9Z A;  4ZBW A;  2LWE A;  2DBF A;  2KM6 A;  4P4H I;  2NAQ A;  2B1W A;  4N1K A;  4IZ5 E;  1Z6T A;  4O6X A;  3LQR A;  2IB1 A;  2D96 A;  1D2Z B;  3MOP A;  2DBG A;  3CRD A;  2F1S A;  2N83 A;  1WXP A;  1CY5 A;  2XV9 A;  3EZQ B;  4O9F A;  2BBR A;  2OF5 A;  4P4H A;  1A1Z A;  1FAD A;  3J6J A;  2MN4 A;  2N7Z A;  2OF5 H;  2NSN A;  1N3K A;  4EWI A;  4IZA B;  2A9I A;  2YGS A;  4RHW E;  1WMG A;  4E9M A;  4LWD A;  2LWD A;  1ICH A;  3LQQ A; 
#chains in the Genus database with same CATH homology
 2YQF A;  2MB9 A;  4JQW A;  1WH4 A;  2MJM A;  2N97 A;  1C15 A;  3T6P A;  4JUP A;  2MPC A;  3YGS C;  2NZ7 A;  4FH0 A;  2P1H A;  2L6A A;  2YU0 A;  4N1J A;  4I16 A;  3J63 A;  2DBD A;  4F44 A;  3KAT A;  4IZ7 B;  1DGN A;  3YGS P;  4QOB A;  2G7R A;  2LS7 A;  2BBZ A;  4A2W A;  2N00 A;  4UZ0 A;  1E3Y A;  1PN5 A;  2L9M A;  1A1W A;  3CL3 A;  3QF2 A;  2YVI A;  1CWW A;  1NGR A;  1D2Z A;  2DBH A;  4M9S A;  3MOP K;  2VGQ A;  4A2Q A;  3EZQ A;  4DWN A;  4NQK A;  2MS8 A;  2N80 A;  1UCP A;  1YGO A;  2HM2 Q;  2A5Y B;  3MOP G;  2N1F A;  2MS7 A;  4O7Q A;  4M9X A;  4O9L A;  4N1L A;  2M5V A;  2KN6 A;  2O71 A;  4RHW A;  4D8O A;  1DDF A;  2GF5 A;  4F42 A;  1E41 A;  2DO9 A;  4M9Z A;  4ZBW A;  2LWE A;  2DBF A;  2KM6 A;  4P4H I;  2NAQ A;  2B1W A;  4N1K A;  4IZ5 E;  1Z6T A;  4O6X A;  3LQR A;  2IB1 A;  2D96 A;  1D2Z B;  3MOP A;  2DBG A;  3CRD A;  2F1S A;  2N83 A;  1WXP A;  1CY5 A;  2XV9 A;  3EZQ B;  4O9F A;  2BBR A;  2OF5 A;  4P4H A;  1A1Z A;  1FAD A;  3J6J A;  2MN4 A;  2N7Z A;  2OF5 H;  2NSN A;  1N3K A;  4EWI A;  4IZA B;  2A9I A;  2YGS A;  4RHW E;  1WMG A;  4E9M A;  4LWD A;  2LWD A;  1ICH A;  3LQQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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