1DEJS

Crystal structure of a dictyostelium/tetrahymena chimera actin (mutant 646: q228k/t229a/a230y/a231k/s232e/e360h) in complex with human gelsolin segment 1
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
127
structure length
127
Chain Sequence
MGSVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords GELSOLIN
publication title Structural basis for the higher Ca(2+)-activation of the regulated actin-activated myosin ATPase observed with Dictyostelium/Tetrahymena actin chimeras.
pubmed doi rcsb
source organism Homo sapiens
total genus 39
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 1999-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1dejS00
4KEEA 2FGHA 5KYUA 3FG7A 2D8BA 3EG9A 1P8XA 1RGIG 1PD0A 4KEDA 5KYNA 3A5NS 2KVKA 1T2LA 3FFNA 2VILA 2MOTA 4S10C 1AK6A 2I2QA 3CIPG 1JHWA 3TU5B 5FAEA 1NMDG 3FFKA 4PKHB 3EG9B 2NUPB 1HQZ1 1NLVG 5IVUA 1C0GS 1F7SA 5KYWA 1D0NA 1NM1G 5KYXA 1COFA 2QTVA 4Z94G 1WFSA 2NUPA 3CJBG 1MDUA 1Q8XA 2VACA 4PKGG 1J72A 2FH4A 2MV2A 3A5OS 1AHQA 2NUTA 1X67A 2FH3A 1NPHA 3CJCG 5A1MA 3A5MS 4LIZA 1VKKA 1YAGG 1QPVA 5KYWB 5DD2A 3EFOA 1CFYA 4KEFA 4CBXG 5KYXB 1TMWA 3CI5G 1P8ZG 3A5LS 1ESVS 1KCQA 1YVNG 1SVRA 2FF6G 3EH1A 3DAWB 2NUTB 1T3YA 3EGDA 3Q2BA 1WNJA 2LXXA 2HD7A 1CNUA 1Q8GA 2XF1A 3EFOB 1TVJA 2XFAA 1M2VB 2FF3A 4JD2H 1H1VG 3EGXA 1UDMA 1AK7A 4CBUG 2FH2A 2L72A 2FH1A 1PD1A 1DEJS 1M2VA 1M2OA 5KYYA 5FAFA 1PCXA 2W0IA 3EGDB 2LJ8A 5L6WC 1T44G 1M4JA 1SVYA 4BEX1 5HVKB 1WM4A 4CBWG 3EH2A 1SVQA 2VIKA 1C0FS 3EGXB 4PKIG 2LLFA 3FG6A 3L50A 2MP4A 1T3XA 5HVKD 5KYYB 1VFQA 5KYUB 1EQYS 1D4XG 1V6FA
chains in the Genus database with same CATH superfamily
4KEEA 2FGHA 5KYUA 3FG7A 2D8BA 3EG9A 1P8XA 1RGIG 1PD0A 4KEDA 5KYNA 3A5NS 2KVKA 3DA7A 1T2LA 3FFNA 2VILA 2MOTA 4S10C 1AK6A 2I2QA 3CIPG 1JHWA 3TU5B 5FAEA 1NMDG 3FFKA 4PKHB 3EG9B 2NUPB 1HQZ1 1NLVG 5IVUA 1C0GS 1F7SA 5KYWA 1D0NA 1NM1G 5KYXA 1COFA 2QTVA 4Z94G 1WFSA 2NUPA 3CJBG 1MDUA 1Q8XA 2VACA 4PKGG 1J72A 2FH4A 2MV2A 3A5OS 1AHQA 2NUTA 1X67A 2FH3A 1NPHA 3CJCG 5A1MA 3A5MS 4LIZA 1VKKA 1YAGG 1QPVA 5KYWB 5DD2A 3EFOA 1CFYA 4KEFA 4CBXG 5KYXB 1TMWA 3CI5G 1P8ZG 3A5LS 1ESVS 1KCQA 1YVNG 1SVRA 2FF6G 3EH1A 3DAWB 2NUTB 1T3YA 3EGDA 3Q2BA 1WNJA 2LXXA 2HD7A 1CNUA 1Q8GA 2XF1A 3EFOB 1TVJA 2XFAA 1M2VB 2FF3A 4JD2H 1H1VG 3EGXA 1UDMA 1AK7A 4CBUG 2FH2A 2L72A 2FH1A 1PD1A 1DEJS 1M2VA 1M2OA 5KYYA 5FAFA 1PCXA 2W0IA 3EGDB 2LJ8A 5L6WC 1T44G 1M4JA 1SVYA 4BEX1 5HVKB 1WM4A 4CBWG 3EH2A 1SVQA 2VIKA 1C0FS 3EGXB 4PKIG 2LLFA 3FG6A 3L50A 2MP4A 1T3XA 5HVKD 5KYYB 1VFQA 5KYUB 1EQYS 1D4XG 1V6FA
chains in the Genus database with same CATH topology
4KEEA 2FGHA 5KYUA 3FG7A 2D8BA 3EG9A 1P8XA 1RGIG 1PD0A 4KEDA 5KYNA 3A5NS 2KVKA 3DA7A 1T2LA 3FFNA 2VILA 2MOTA 4S10C 1AK6A 2I2QA 3CIPG 1JHWA 3TU5B 5FAEA 1NMDG 3FFKA 4PKHB 3EG9B 2NUPB 1HQZ1 1NLVG 5IVUA 1C0GS 1F7SA 5KYWA 1D0NA 1NM1G 5KYXA 1COFA 2QTVA 4Z94G 1WFSA 2NUPA 3CJBG 1MDUA 1Q8XA 2VACA 4PKGG 1J72A 2FH4A 2MV2A 3A5OS 1AHQA 2NUTA 1X67A 2FH3A 1NPHA 3CJCG 5A1MA 3A5MS 4LIZA 1VKKA 1YAGG 1QPVA 5KYWB 5DD2A 3EFOA 1CFYA 4KEFA 4CBXG 5KYXB 1TMWA 3CI5G 1P8ZG 3A5LS 1ESVS 1KCQA 1YVNG 1SVRA 2FF6G 3EH1A 3DAWB 2NUTB 1T3YA 3EGDA 3Q2BA 1WNJA 2LXXA 2HD7A 1CNUA 1Q8GA 2XF1A 3EFOB 1TVJA 2XFAA 1M2VB 2FF3A 4JD2H 1H1VG 3EGXA 1UDMA 1AK7A 4CBUG 2FH2A 2L72A 2FH1A 1PD1A 1DEJS 1M2VA 1M2OA 5KYYA 5FAFA 1PCXA 2W0IA 3EGDB 2LJ8A 5L6WC 1T44G 1M4JA 1SVYA 4BEX1 5HVKB 1WM4A 4CBWG 3EH2A 1SVQA 2VIKA 1C0FS 3EGXB 4PKIG 2LLFA 3FG6A 3L50A 2MP4A 1T3XA 5HVKD 5KYYB 1VFQA 5KYUB 1EQYS 1D4XG 1V6FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KEE A;  2FGH A;  5KYU A;  3FG7 A;  2D8B A;  3EG9 A;  1P8X A;  1RGI G;  1PD0 A;  4KED A;  5KYN A;  3A5N S;  2KVK A;  1T2L A;  3FFN A;  2VIL A;  2MOT A;  4S10 C;  1AK6 A;  2I2Q A;  3CIP G;  1JHW A;  3TU5 B;  5FAE A;  1NMD G;  3FFK A;  4PKH B;  3EG9 B;  2NUP B;  1HQZ 1;  1NLV G;  5IVU A;  1C0G S;  1F7S A;  5KYW A;  1D0N A;  1NM1 G;  5KYX A;  1COF A;  2QTV A;  4Z94 G;  1WFS A;  2NUP A;  3CJB G;  1MDU A;  1Q8X A;  2VAC A;  4PKG G;  1J72 A;  2FH4 A;  2MV2 A;  3A5O S;  1AHQ A;  2NUT A;  1X67 A;  2FH3 A;  1NPH A;  3CJC G;  5A1M A;  3A5M S;  4LIZ A;  1VKK A;  1YAG G;  1QPV A;  5KYW B;  5DD2 A;  3EFO A;  1CFY A;  4KEF A;  4CBX G;  5KYX B;  1TMW A;  3CI5 G;  1P8Z G;  3A5L S;  1ESV S;  1KCQ A;  1YVN G;  1SVR A;  2FF6 G;  3EH1 A;  3DAW B;  2NUT B;  1T3Y A;  3EGD A;  3Q2B A;  1WNJ A;  2LXX A;  2HD7 A;  1CNU A;  1Q8G A;  2XF1 A;  3EFO B;  1TVJ A;  2XFA A;  1M2V B;  2FF3 A;  4JD2 H;  1H1V G;  3EGX A;  1UDM A;  1AK7 A;  4CBU G;  2FH2 A;  2L72 A;  2FH1 A;  1PD1 A;  1DEJ S;  1M2V A;  1M2O A;  5KYY A;  5FAF A;  1PCX A;  2W0I A;  3EGD B;  2LJ8 A;  5L6W C;  1T44 G;  1M4J A;  1SVY A;  4BEX 1;  5HVK B;  1WM4 A;  4CBW G;  3EH2 A;  1SVQ A;  2VIK A;  1C0F S;  3EGX B;  4PKI G;  2LLF A;  3FG6 A;  3L50 A;  2MP4 A;  1T3X A;  5HVK D;  5KYY B;  1VFQ A;  5KYU B;  1EQY S;  1D4X G;  1V6F A; 
#chains in the Genus database with same CATH topology
 4KEE A;  2FGH A;  5KYU A;  3FG7 A;  2D8B A;  3EG9 A;  1P8X A;  1RGI G;  1PD0 A;  4KED A;  5KYN A;  3A5N S;  2KVK A;  3DA7 A;  1T2L A;  3FFN A;  2VIL A;  2MOT A;  4S10 C;  1AK6 A;  2I2Q A;  3CIP G;  1JHW A;  3TU5 B;  5FAE A;  1NMD G;  3FFK A;  4PKH B;  3EG9 B;  2NUP B;  1HQZ 1;  1NLV G;  5IVU A;  1C0G S;  1F7S A;  5KYW A;  1D0N A;  1NM1 G;  5KYX A;  1COF A;  2QTV A;  4Z94 G;  1WFS A;  2NUP A;  3CJB G;  1MDU A;  1Q8X A;  2VAC A;  4PKG G;  1J72 A;  2FH4 A;  2MV2 A;  3A5O S;  1AHQ A;  2NUT A;  1X67 A;  2FH3 A;  1NPH A;  3CJC G;  5A1M A;  3A5M S;  4LIZ A;  1VKK A;  1YAG G;  1QPV A;  5KYW B;  5DD2 A;  3EFO A;  1CFY A;  4KEF A;  4CBX G;  5KYX B;  1TMW A;  3CI5 G;  1P8Z G;  3A5L S;  1ESV S;  1KCQ A;  1YVN G;  1SVR A;  2FF6 G;  3EH1 A;  3DAW B;  2NUT B;  1T3Y A;  3EGD A;  3Q2B A;  1WNJ A;  2LXX A;  2HD7 A;  1CNU A;  1Q8G A;  2XF1 A;  3EFO B;  1TVJ A;  2XFA A;  1M2V B;  2FF3 A;  4JD2 H;  1H1V G;  3EGX A;  1UDM A;  1AK7 A;  4CBU G;  2FH2 A;  2L72 A;  2FH1 A;  1PD1 A;  1DEJ S;  1M2V A;  1M2O A;  5KYY A;  5FAF A;  1PCX A;  2W0I A;  3EGD B;  2LJ8 A;  5L6W C;  1T44 G;  1M4J A;  1SVY A;  4BEX 1;  5HVK B;  1WM4 A;  4CBW G;  3EH2 A;  1SVQ A;  2VIK A;  1C0F S;  3EGX B;  4PKI G;  2LLF A;  3FG6 A;  3L50 A;  2MP4 A;  1T3X A;  5HVK D;  5KYY B;  1VFQ A;  5KYU B;  1EQY S;  1D4X G;  1V6F A; 
#chains in the Genus database with same CATH homology
 4KEE A;  2FGH A;  5KYU A;  3FG7 A;  2D8B A;  3EG9 A;  1P8X A;  1RGI G;  1PD0 A;  4KED A;  5KYN A;  3A5N S;  2KVK A;  3DA7 A;  1T2L A;  3FFN A;  2VIL A;  2MOT A;  4S10 C;  1AK6 A;  2I2Q A;  3CIP G;  1JHW A;  3TU5 B;  5FAE A;  1NMD G;  3FFK A;  4PKH B;  3EG9 B;  2NUP B;  1HQZ 1;  1NLV G;  5IVU A;  1C0G S;  1F7S A;  5KYW A;  1D0N A;  1NM1 G;  5KYX A;  1COF A;  2QTV A;  4Z94 G;  1WFS A;  2NUP A;  3CJB G;  1MDU A;  1Q8X A;  2VAC A;  4PKG G;  1J72 A;  2FH4 A;  2MV2 A;  3A5O S;  1AHQ A;  2NUT A;  1X67 A;  2FH3 A;  1NPH A;  3CJC G;  5A1M A;  3A5M S;  4LIZ A;  1VKK A;  1YAG G;  1QPV A;  5KYW B;  5DD2 A;  3EFO A;  1CFY A;  4KEF A;  4CBX G;  5KYX B;  1TMW A;  3CI5 G;  1P8Z G;  3A5L S;  1ESV S;  1KCQ A;  1YVN G;  1SVR A;  2FF6 G;  3EH1 A;  3DAW B;  2NUT B;  1T3Y A;  3EGD A;  3Q2B A;  1WNJ A;  2LXX A;  2HD7 A;  1CNU A;  1Q8G A;  2XF1 A;  3EFO B;  1TVJ A;  2XFA A;  1M2V B;  2FF3 A;  4JD2 H;  1H1V G;  3EGX A;  1UDM A;  1AK7 A;  4CBU G;  2FH2 A;  2L72 A;  2FH1 A;  1PD1 A;  1DEJ S;  1M2V A;  1M2O A;  5KYY A;  5FAF A;  1PCX A;  2W0I A;  3EGD B;  2LJ8 A;  5L6W C;  1T44 G;  1M4J A;  1SVY A;  4BEX 1;  5HVK B;  1WM4 A;  4CBW G;  3EH2 A;  1SVQ A;  2VIK A;  1C0F S;  3EGX B;  4PKI G;  2LLF A;  3FG6 A;  3L50 A;  2MP4 A;  1T3X A;  5HVK D;  5KYY B;  1VFQ A;  5KYU B;  1EQY S;  1D4X G;  1V6F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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