1DPDA

Crystallographic and enzymatic investigations on the role of ser558, his610 and asn614 in the catalytic mechanism of azotobacter vinelandii dihydrolipoamide acetyltransferase (e2p)
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
243
structure length
243
Chain Sequence
IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dihydrolipoamide acetyltransferase
molecule keywords DIHYDROLIPOYL-TRANSACETYLASE
publication title Crystallographic and enzymatic investigations on the role of Ser558, His610, and Asn614 in the catalytic mechanism of Azotobacter vinelandii dihydrolipoamide acetyltransferase (E2p).
pubmed doi rcsb
source organism Azotobacter vinelandii
total genus 67
structure length 243
sequence length 243
ec nomenclature ec 2.3.1.12: Dihydrolipoyllysine-residue acetyltransferase.
pdb deposition date 1995-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1dpdA00
2E1VA 1XMCA 5T3EA 4JN3A 1CLAA 1XMDA 3U9FA 2E1TA 5DUAA 1EABA 5KJTA 2CLAA 1DPDA 1C4TA 5FALA 2XHGA 1XL8A 2RKTA 3B30A 4KE4A 1NOCB 1E2OA 1XL7A 2II5A 2JGPA 4G2MA 4KECA 2XR7A 5KJWA 4JN5A 1Q23A 3U9BA 4N72A 2E1UA 1EADA 4HVMA 1PD5A 2ZBAA 3FP0A 1L5AA 1EACA 2II3A 2RKVA 4CLAA 1EAAA 4G0BA 2VSQA 5DU9A 2I9DA 1EAEA 2BGHA 3L60A 3MAEA 1DPBA 1QCAA 2II4A 3B2SA 3FOTA 5KJUA 1CIAA 1DPCA 5FANA 5KJSA 1EAFA 5KJVA 1Q9JA 3CLAA 4G22A 1SCZA 2IHWA
chains in the Genus database with same CATH superfamily
1XMCA 4JN3A 2CLAA 1NOCB 2RCUA 2II5A 5KJWA 1NM8A 1EACA 2II3A 2H3WA 2I9DA 3MAEA 2H3PA 2FY3A 4EPHA 2E1VA 1NDBA 2E1TA 2DEBA 2FY2A 3B30A 4KE4A 4KECA 2H3UA 1S5OA 2E1UA 1EADA 4HVMA 2ZBAA 1L5AA 2RKVA 4CLAA 1EAAA 5DU9A 1Q6XA 3L60A 2FY4A 2II4A 3FOTA 5KJUA 1DPCA 5KJVA 5T3EA 2FYOA 5DUAA 1DPDA 1C4TA 5FALA 1T7OA 1XL7A 2XR7A 1T7NA 1T7QA 4N72A 1NDIA 2H4TA 2VSQA 1EAEA 1DPBA 1CIAA 4EP9A 5FANA 3CLAA 4G22A 1SCZA 2FY5A 4EYWA 1CLAA 1XMDA 3U9FA 5KJTA 1EABA 2XHGA 2FW3A 1XL8A 2RKTA 1E2OA 2JGPA 4G2MA 4JN5A 1Q23A 3U9BA 1PD5A 1T1UA 3FP0A 4G0BA 2BGHA 1NDFA 1QCAA 3B2SA 5KJSA 1EAFA 1Q9JA 2IHWA
chains in the Genus database with same CATH topology
2E1VA 1XMCA 5T3EA 4JN3A 1CLAA 1XMDA 3U9FA 2E1TA 5DUAA 1EABA 5KJTA 2CLAA 1DPDA 1C4TA 5FALA 2XHGA 1XL8A 2RKTA 3B30A 4KE4A 1NOCB 1E2OA 1XL7A 2II5A 2JGPA 4G2MA 4KECA 2XR7A 5KJWA 4JN5A 1Q23A 3U9BA 4N72A 2E1UA 1EADA 4HVMA 1PD5A 2ZBAA 3FP0A 1L5AA 1EACA 2II3A 2RKVA 4CLAA 1EAAA 4G0BA 2VSQA 5DU9A 2I9DA 1EAEA 2BGHA 3L60A 3MAEA 1DPBA 1QCAA 2II4A 3B2SA 3FOTA 5KJUA 1CIAA 1DPCA 5FANA 5KJSA 1EAFA 5KJVA 1Q9JA 3CLAA 4G22A 1SCZA 2IHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E1V A;  1XMC A;  5T3E A;  4JN3 A;  1CLA A;  1XMD A;  3U9F A;  2E1T A;  5DUA A;  1EAB A;  5KJT A;  2CLA A;  1DPD A;  1C4T A;  5FAL A;  2XHG A;  1XL8 A;  2RKT A;  3B30 A;  4KE4 A;  1NOC B;  1E2O A;  1XL7 A;  2II5 A;  2JGP A;  4G2M A;  4KEC A;  2XR7 A;  5KJW A;  4JN5 A;  1Q23 A;  3U9B A;  4N72 A;  2E1U A;  1EAD A;  4HVM A;  1PD5 A;  2ZBA A;  3FP0 A;  1L5A A;  1EAC A;  2II3 A;  2RKV A;  4CLA A;  1EAA A;  4G0B A;  2VSQ A;  5DU9 A;  2I9D A;  1EAE A;  2BGH A;  3L60 A;  3MAE A;  1DPB A;  1QCA A;  2II4 A;  3B2S A;  3FOT A;  5KJU A;  1CIA A;  1DPC A;  5FAN A;  5KJS A;  1EAF A;  5KJV A;  1Q9J A;  3CLA A;  4G22 A;  1SCZ A;  2IHW A; 
#chains in the Genus database with same CATH topology
 1XMC A;  4JN3 A;  2CLA A;  1NOC B;  2RCU A;  2II5 A;  5KJW A;  1NM8 A;  1EAC A;  2II3 A;  2H3W A;  2I9D A;  3MAE A;  2H3P A;  2FY3 A;  4EPH A;  2E1V A;  1NDB A;  2E1T A;  2DEB A;  2FY2 A;  3B30 A;  4KE4 A;  4KEC A;  2H3U A;  1S5O A;  2E1U A;  1EAD A;  4HVM A;  2ZBA A;  1L5A A;  2RKV A;  4CLA A;  1EAA A;  5DU9 A;  1Q6X A;  3L60 A;  2FY4 A;  2II4 A;  3FOT A;  5KJU A;  1DPC A;  5KJV A;  5T3E A;  2FYO A;  5DUA A;  1DPD A;  1C4T A;  5FAL A;  1T7O A;  1XL7 A;  2XR7 A;  1T7N A;  1T7Q A;  4N72 A;  1NDI A;  2H4T A;  2VSQ A;  1EAE A;  1DPB A;  1CIA A;  4EP9 A;  5FAN A;  3CLA A;  4G22 A;  1SCZ A;  2FY5 A;  4EYW A;  1CLA A;  1XMD A;  3U9F A;  5KJT A;  1EAB A;  2XHG A;  2FW3 A;  1XL8 A;  2RKT A;  1E2O A;  2JGP A;  4G2M A;  4JN5 A;  1Q23 A;  3U9B A;  1PD5 A;  1T1U A;  3FP0 A;  4G0B A;  2BGH A;  1NDF A;  1QCA A;  3B2S A;  5KJS A;  1EAF A;  1Q9J A;  2IHW A; 
#chains in the Genus database with same CATH homology
 2E1V A;  1XMC A;  5T3E A;  4JN3 A;  1CLA A;  1XMD A;  3U9F A;  2E1T A;  5DUA A;  1EAB A;  5KJT A;  2CLA A;  1DPD A;  1C4T A;  5FAL A;  2XHG A;  1XL8 A;  2RKT A;  3B30 A;  4KE4 A;  1NOC B;  1E2O A;  1XL7 A;  2II5 A;  2JGP A;  4G2M A;  4KEC A;  2XR7 A;  5KJW A;  4JN5 A;  1Q23 A;  3U9B A;  4N72 A;  2E1U A;  1EAD A;  4HVM A;  1PD5 A;  2ZBA A;  3FP0 A;  1L5A A;  1EAC A;  2II3 A;  2RKV A;  4CLA A;  1EAA A;  4G0B A;  2VSQ A;  5DU9 A;  2I9D A;  1EAE A;  2BGH A;  3L60 A;  3MAE A;  1DPB A;  1QCA A;  2II4 A;  3B2S A;  3FOT A;  5KJU A;  1CIA A;  1DPC A;  5FAN A;  5KJS A;  1EAF A;  5KJV A;  1Q9J A;  3CLA A;  4G22 A;  1SCZ A;  2IHW A; 
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