1DVMA

Active form of human pai-1
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
376
structure length
375
Chain Sequence
PPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISHLLGTGAVQQLTRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAPYEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVALALQKVKIEVNESGTVASSSAVIVSARMAPEEIIIDRPFLFVVRHNPTGTVLFMGQVMEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords PLASMINOGEN ACTIVATOR INHIBITOR-1
publication title Structures of active and latent PAI-1: a possible stabilizing role for chloride ions.
pubmed doi rcsb
source organism Homo sapiens
total genus 113
structure length 375
sequence length 376
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2000-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1dvmA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1dvmA01
3H5CA 3CVMA 3B9FI 2ZV6A 2CEOA 1T1FA 2H4RA 1DZGL 2OL2A 2VDYA 1TB6I 5BRRI 2ARRA 4DY0A 3VVJA 2WXZC 1XU8A 1YXAA 2PEFA 1ATTA 4EB1I 3NDFA 2WXWA 1JJOC 3OZQA 5HGCA 4X30A 7APIA 5INWA 4Y40A 3NDAA 4DTEA 4BB2A 1C5GA 4R9IA 2RIVA 4GA7A 4C49A 4P0OA 1OVAC 1M93B 2B5TI 2D26A 4AFXA 1NQ9I 2ARQA 1ANTI 1ATHA 1JMOA 3DY0A 1XQGA 4G8RA 4AJTA 4YIAA 4ROAA 1JRRA 4G8OA 2WXZA 1BR8I 1WZ9A 1OYHL 3FGQA 4AU2A 1OC0A 2DUTA 2WXXA 1E03I 2WXYC 2H4QA 4RO9A 1LQ8A 3NE4A 2WY1A 2HI9A 2ACHA 4IC0A 1B3KA 1UHGA 2RIWA 1HLEA 1IMVA 2B4XL 1ATUA 2HIJL 2BEHL 4ROBA 5CDZA 9PAIA 3NDDA 3LW2A 4IF8A 5CDXA 3EVJI 1F0CA 1AS4A 4AQHA 1QLPA 2XN3A 2PEEA 1DZHI 1SR5A 8APIA 2GD4C 3F02A 3T1PA 1DVMA 1EZXA 5EI0A 3DLWA 3ZHAA 1D5SA 3PB1I 4P0FA 3STOA 2VDXA 1LJ5A 1DZGI 3F1SA 1R1LI 4EB1L 1C8OA 2ANTI 4AU4A 4AJUA 3R4LA 4C41A 1JTIA 1E04I 1QMBA 2XN5A 1SNGA 3KCGI 4DY7C 1AZXI 3PZFA 2OAYA 9APIA 3CWLA 5IO1A 1MTPA 4RSQA 1OVAA 1IZ2A 5C98A 1KCTA 4AU3A 1PSIA 1LK6I 3CWMA 3DRMA 4Y3KA 1OVAB 1JVQI 2H4PA 2V95A 4AU3B 3DRUA 1OO8A 1OPHA 1SEKA 3EOXA 1DVNA 3Q02A 4PYWA 3F5NA 2WY0C 1E05I 1A7CA 4ZK3A 2XN7A 4ZK0A 1OYHI 1K9OI 3UT3A 1XQJA 2XN6A 3Q03A 5CE0A 2R9YA 3CAAA 1HP7A 2VH4A 4CAAA 4KDSA 2QUGA 1JMJA 1QMNA 3LE2A 2B4XI 2ZNHA 2HIJI 2BEHI 1DB2A 1BY7A 1DZHL
chains in the Genus database with same CATH superfamily
3H5CA 3CVMA 3B9FI 2ZV6A 2CEOA 1T1FA 2H4RA 1DZGL 2OL2A 2VDYA 1TB6I 5BRRI 2ARRA 4DY0A 3VVJA 2WXZC 1XU8A 1YXAA 2PEFA 1ATTA 4EB1I 3NDFA 2WXWA 1JJOC 3OZQA 5HGCA 4X30A 7APIA 5INWA 4Y40A 3NDAA 4DTEA 4BB2A 1C5GA 4R9IA 2RIVA 4GA7A 4C49A 4P0OA 1OVAC 1M93B 2B5TI 2D26A 4AFXA 1NQ9I 2ARQA 1ANTI 1ATHA 1JMOA 3DY0A 1XQGA 4G8RA 4AJTA 4YIAA 4ROAA 1JRRA 4G8OA 2WXZA 1BR8I 1WZ9A 1OYHL 3FGQA 4AU2A 1OC0A 2DUTA 2WXXA 1E03I 2WXYC 2H4QA 4RO9A 1LQ8A 3NE4A 2WY1A 2HI9A 2ACHA 4IC0A 1B3KA 1UHGA 2RIWA 1HLEA 1IMVA 2B4XL 1ATUA 2HIJL 2BEHL 4ROBA 5CDZA 9PAIA 3NDDA 3LW2A 4IF8A 5CDXA 3EVJI 1F0CA 1AS4A 4AQHA 1QLPA 2XN3A 2PEEA 1DZHI 1SR5A 8APIA 2GD4C 3F02A 3T1PA 1DVMA 1EZXA 5EI0A 3DLWA 3ZHAA 1D5SA 3PB1I 4P0FA 3STOA 2VDXA 1LJ5A 1DZGI 3F1SA 1R1LI 4EB1L 1C8OA 2ANTI 4AU4A 4AJUA 3R4LA 4C41A 1JTIA 1E04I 1QMBA 2XN5A 1SNGA 3KCGI 4DY7C 1AZXI 3PZFA 2OAYA 9APIA 3CWLA 5IO1A 1MTPA 4RSQA 1OVAA 1IZ2A 5C98A 1KCTA 4AU3A 1PSIA 1LK6I 3CWMA 3DRMA 4Y3KA 1OVAB 1JVQI 2H4PA 2V95A 4AU3B 3DRUA 1OO8A 1OPHA 1SEKA 3EOXA 1DVNA 3Q02A 4PYWA 3F5NA 2WY0C 1E05I 1A7CA 4ZK3A 2XN7A 4ZK0A 1OYHI 1K9OI 3UT3A 1XQJA 2XN6A 3Q03A 5CE0A 2R9YA 3CAAA 1HP7A 2VH4A 4CAAA 4KDSA 2QUGA 1JMJA 1QMNA 3LE2A 2B4XI 2ZNHA 2HIJI 2BEHI 1DB2A 1BY7A 1DZHL
chains in the Genus database with same CATH topology
3H5CA 3CVMA 3B9FI 2ZV6A 2CEOA 1T1FA 2H4RA 1DZGL 2OL2A 2VDYA 1TB6I 5BRRI 2ARRA 4DY0A 3VVJA 2WXZC 1XU8A 1YXAA 2PEFA 1ATTA 4EB1I 3NDFA 2WXWA 1JJOC 3OZQA 5HGCA 4X30A 7APIA 5INWA 4Y40A 3NDAA 4DTEA 4BB2A 1C5GA 4R9IA 2RIVA 4GA7A 4C49A 4P0OA 1OVAC 1M93B 2B5TI 2D26A 4AFXA 1NQ9I 2ARQA 1ANTI 1ATHA 1JMOA 3DY0A 1XQGA 4G8RA 4AJTA 4YIAA 4ROAA 1JRRA 4G8OA 2WXZA 1BR8I 1WZ9A 1OYHL 3FGQA 4AU2A 1OC0A 2DUTA 2WXXA 1E03I 2WXYC 2H4QA 4RO9A 1LQ8A 3NE4A 2WY1A 2HI9A 2ACHA 4IC0A 1B3KA 1UHGA 2RIWA 1HLEA 1IMVA 2B4XL 1ATUA 2HIJL 2BEHL 4ROBA 5CDZA 9PAIA 3NDDA 3LW2A 4IF8A 5CDXA 3EVJI 1F0CA 1AS4A 4AQHA 1QLPA 2XN3A 2PEEA 1DZHI 1SR5A 8APIA 2GD4C 3F02A 3T1PA 1DVMA 1EZXA 5EI0A 3DLWA 3ZHAA 1D5SA 3PB1I 4P0FA 3STOA 2VDXA 1LJ5A 1DZGI 3F1SA 1R1LI 4EB1L 1C8OA 2ANTI 4AU4A 4AJUA 3R4LA 4C41A 1JTIA 1E04I 1QMBA 2XN5A 1SNGA 3KCGI 4DY7C 1AZXI 3PZFA 2OAYA 9APIA 3CWLA 5IO1A 1MTPA 4RSQA 1OVAA 1IZ2A 5C98A 1KCTA 4AU3A 1PSIA 1LK6I 3CWMA 3DRMA 4Y3KA 1OVAB 1JVQI 2H4PA 2V95A 4AU3B 3DRUA 1OO8A 1OPHA 1SEKA 3EOXA 1DVNA 3Q02A 4PYWA 3F5NA 2WY0C 1E05I 1A7CA 4ZK3A 2XN7A 4ZK0A 1OYHI 1K9OI 3UT3A 1XQJA 2XN6A 3Q03A 5CE0A 2R9YA 3CAAA 1HP7A 2VH4A 4CAAA 4KDSA 2QUGA 1JMJA 1QMNA 3LE2A 2B4XI 2ZNHA 2HIJI 2BEHI 1DB2A 1BY7A 1DZHL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H5C A;  3CVM A;  3B9F I;  2ZV6 A;  2CEO A;  1T1F A;  2H4R A;  1DZG L;  2OL2 A;  2VDY A;  1TB6 I;  5BRR I;  2ARR A;  4DY0 A;  3VVJ A;  2WXZ C;  1XU8 A;  1YXA A;  2PEF A;  1ATT A;  4EB1 I;  3NDF A;  2WXW A;  1JJO C;  3OZQ A;  5HGC A;  4X30 A;  7API A;  5INW A;  4Y40 A;  3NDA A;  4DTE A;  4BB2 A;  1C5G A;  4R9I A;  2RIV A;  4GA7 A;  4C49 A;  4P0O A;  1OVA C;  1M93 B;  2B5T I;  2D26 A;  4AFX A;  1NQ9 I;  2ARQ A;  1ANT I;  1ATH A;  1JMO A;  3DY0 A;  1XQG A;  4G8R A;  4AJT A;  4YIA A;  4ROA A;  1JRR A;  4G8O A;  2WXZ A;  1BR8 I;  1WZ9 A;  1OYH L;  3FGQ A;  4AU2 A;  1OC0 A;  2DUT A;  2WXX A;  1E03 I;  2WXY C;  2H4Q A;  4RO9 A;  1LQ8 A;  3NE4 A;  2WY1 A;  2HI9 A;  2ACH A;  4IC0 A;  1B3K A;  1UHG A;  2RIW A;  1HLE A;  1IMV A;  2B4X L;  1ATU A;  2HIJ L;  2BEH L;  4ROB A;  5CDZ A;  9PAI A;  3NDD A;  3LW2 A;  4IF8 A;  5CDX A;  3EVJ I;  1F0C A;  1AS4 A;  4AQH A;  1QLP A;  2XN3 A;  2PEE A;  1DZH I;  1SR5 A;  8API A;  2GD4 C;  3F02 A;  3T1P A;  1DVM A;  1EZX A;  5EI0 A;  3DLW A;  3ZHA A;  1D5S A;  3PB1 I;  4P0F A;  3STO A;  2VDX A;  1LJ5 A;  1DZG I;  3F1S A;  1R1L I;  4EB1 L;  1C8O A;  2ANT I;  4AU4 A;  4AJU A;  3R4L A;  4C41 A;  1JTI A;  1E04 I;  1QMB A;  2XN5 A;  1SNG A;  3KCG I;  4DY7 C;  1AZX I;  3PZF A;  2OAY A;  9API A;  3CWL A;  5IO1 A;  1MTP A;  4RSQ A;  1OVA A;  1IZ2 A;  5C98 A;  1KCT A;  4AU3 A;  1PSI A;  1LK6 I;  3CWM A;  3DRM A;  4Y3K A;  1OVA B;  1JVQ I;  2H4P A;  2V95 A;  4AU3 B;  3DRU A;  1OO8 A;  1OPH A;  1SEK A;  3EOX A;  1DVN A;  3Q02 A;  4PYW A;  3F5N A;  2WY0 C;  1E05 I;  1A7C A;  4ZK3 A;  2XN7 A;  4ZK0 A;  1OYH I;  1K9O I;  3UT3 A;  1XQJ A;  2XN6 A;  3Q03 A;  5CE0 A;  2R9Y A;  3CAA A;  1HP7 A;  2VH4 A;  4CAA A;  4KDS A;  2QUG A;  1JMJ A;  1QMN A;  3LE2 A;  2B4X I;  2ZNH A;  2HIJ I;  2BEH I;  1DB2 A;  1BY7 A;  1DZH L; 
#chains in the Genus database with same CATH topology
 3H5C A;  3CVM A;  3B9F I;  2ZV6 A;  2CEO A;  1T1F A;  2H4R A;  1DZG L;  2OL2 A;  2VDY A;  1TB6 I;  5BRR I;  2ARR A;  4DY0 A;  3VVJ A;  2WXZ C;  1XU8 A;  1YXA A;  2PEF A;  1ATT A;  4EB1 I;  3NDF A;  2WXW A;  1JJO C;  3OZQ A;  5HGC A;  4X30 A;  7API A;  5INW A;  4Y40 A;  3NDA A;  4DTE A;  4BB2 A;  1C5G A;  4R9I A;  2RIV A;  4GA7 A;  4C49 A;  4P0O A;  1OVA C;  1M93 B;  2B5T I;  2D26 A;  4AFX A;  1NQ9 I;  2ARQ A;  1ANT I;  1ATH A;  1JMO A;  3DY0 A;  1XQG A;  4G8R A;  4AJT A;  4YIA A;  4ROA A;  1JRR A;  4G8O A;  2WXZ A;  1BR8 I;  1WZ9 A;  1OYH L;  3FGQ A;  4AU2 A;  1OC0 A;  2DUT A;  2WXX A;  1E03 I;  2WXY C;  2H4Q A;  4RO9 A;  1LQ8 A;  3NE4 A;  2WY1 A;  2HI9 A;  2ACH A;  4IC0 A;  1B3K A;  1UHG A;  2RIW A;  1HLE A;  1IMV A;  2B4X L;  1ATU A;  2HIJ L;  2BEH L;  4ROB A;  5CDZ A;  9PAI A;  3NDD A;  3LW2 A;  4IF8 A;  5CDX A;  3EVJ I;  1F0C A;  1AS4 A;  4AQH A;  1QLP A;  2XN3 A;  2PEE A;  1DZH I;  1SR5 A;  8API A;  2GD4 C;  3F02 A;  3T1P A;  1DVM A;  1EZX A;  5EI0 A;  3DLW A;  3ZHA A;  1D5S A;  3PB1 I;  4P0F A;  3STO A;  2VDX A;  1LJ5 A;  1DZG I;  3F1S A;  1R1L I;  4EB1 L;  1C8O A;  2ANT I;  4AU4 A;  4AJU A;  3R4L A;  4C41 A;  1JTI A;  1E04 I;  1QMB A;  2XN5 A;  1SNG A;  3KCG I;  4DY7 C;  1AZX I;  3PZF A;  2OAY A;  9API A;  3CWL A;  5IO1 A;  1MTP A;  4RSQ A;  1OVA A;  1IZ2 A;  5C98 A;  1KCT A;  4AU3 A;  1PSI A;  1LK6 I;  3CWM A;  3DRM A;  4Y3K A;  1OVA B;  1JVQ I;  2H4P A;  2V95 A;  4AU3 B;  3DRU A;  1OO8 A;  1OPH A;  1SEK A;  3EOX A;  1DVN A;  3Q02 A;  4PYW A;  3F5N A;  2WY0 C;  1E05 I;  1A7C A;  4ZK3 A;  2XN7 A;  4ZK0 A;  1OYH I;  1K9O I;  3UT3 A;  1XQJ A;  2XN6 A;  3Q03 A;  5CE0 A;  2R9Y A;  3CAA A;  1HP7 A;  2VH4 A;  4CAA A;  4KDS A;  2QUG A;  1JMJ A;  1QMN A;  3LE2 A;  2B4X I;  2ZNH A;  2HIJ I;  2BEH I;  1DB2 A;  1BY7 A;  1DZH L; 
#chains in the Genus database with same CATH homology
 3H5C A;  3CVM A;  3B9F I;  2ZV6 A;  2CEO A;  1T1F A;  2H4R A;  1DZG L;  2OL2 A;  2VDY A;  1TB6 I;  5BRR I;  2ARR A;  4DY0 A;  3VVJ A;  2WXZ C;  1XU8 A;  1YXA A;  2PEF A;  1ATT A;  4EB1 I;  3NDF A;  2WXW A;  1JJO C;  3OZQ A;  5HGC A;  4X30 A;  7API A;  5INW A;  4Y40 A;  3NDA A;  4DTE A;  4BB2 A;  1C5G A;  4R9I A;  2RIV A;  4GA7 A;  4C49 A;  4P0O A;  1OVA C;  1M93 B;  2B5T I;  2D26 A;  4AFX A;  1NQ9 I;  2ARQ A;  1ANT I;  1ATH A;  1JMO A;  3DY0 A;  1XQG A;  4G8R A;  4AJT A;  4YIA A;  4ROA A;  1JRR A;  4G8O A;  2WXZ A;  1BR8 I;  1WZ9 A;  1OYH L;  3FGQ A;  4AU2 A;  1OC0 A;  2DUT A;  2WXX A;  1E03 I;  2WXY C;  2H4Q A;  4RO9 A;  1LQ8 A;  3NE4 A;  2WY1 A;  2HI9 A;  2ACH A;  4IC0 A;  1B3K A;  1UHG A;  2RIW A;  1HLE A;  1IMV A;  2B4X L;  1ATU A;  2HIJ L;  2BEH L;  4ROB A;  5CDZ A;  9PAI A;  3NDD A;  3LW2 A;  4IF8 A;  5CDX A;  3EVJ I;  1F0C A;  1AS4 A;  4AQH A;  1QLP A;  2XN3 A;  2PEE A;  1DZH I;  1SR5 A;  8API A;  2GD4 C;  3F02 A;  3T1P A;  1DVM A;  1EZX A;  5EI0 A;  3DLW A;  3ZHA A;  1D5S A;  3PB1 I;  4P0F A;  3STO A;  2VDX A;  1LJ5 A;  1DZG I;  3F1S A;  1R1L I;  4EB1 L;  1C8O A;  2ANT I;  4AU4 A;  4AJU A;  3R4L A;  4C41 A;  1JTI A;  1E04 I;  1QMB A;  2XN5 A;  1SNG A;  3KCG I;  4DY7 C;  1AZX I;  3PZF A;  2OAY A;  9API A;  3CWL A;  5IO1 A;  1MTP A;  4RSQ A;  1OVA A;  1IZ2 A;  5C98 A;  1KCT A;  4AU3 A;  1PSI A;  1LK6 I;  3CWM A;  3DRM A;  4Y3K A;  1OVA B;  1JVQ I;  2H4P A;  2V95 A;  4AU3 B;  3DRU A;  1OO8 A;  1OPH A;  1SEK A;  3EOX A;  1DVN A;  3Q02 A;  4PYW A;  3F5N A;  2WY0 C;  1E05 I;  1A7C A;  4ZK3 A;  2XN7 A;  4ZK0 A;  1OYH I;  1K9O I;  3UT3 A;  1XQJ A;  2XN6 A;  3Q03 A;  5CE0 A;  2R9Y A;  3CAA A;  1HP7 A;  2VH4 A;  4CAA A;  4KDS A;  2QUG A;  1JMJ A;  1QMN A;  3LE2 A;  2B4X I;  2ZNH A;  2HIJ I;  2BEH I;  1DB2 A;  1BY7 A;  1DZH L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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