1EMVA

Crystal structure of colicin e9 dnase domain with its cognate immunity protein im9 (1.7 angstroms)
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords IMMUNITY PROTEIN IM9
publication title Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes.
pubmed doi rcsb
source organism Escherichia coli
total genus 28
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1emvA00
3U43A 2JB0A 3GJNA 1UJZA 3GKLC 1IMQA 1GXHA 2K5XA 2JAZA 1ZNVA 4UHPB 2NO8A 2VLQA 2VLPA 2GZIA 1UNKA 1MZ8A 2WPTA 2ERHA 1BXIA 2K0DX 1IMPA 4F37A 2GYKA 2GZGA 2GZFA 4QKOA 2GZJA 1E0HA 2VLOA 1EMVA 1CEIA 1FR2A 2VLNA 5EW5E 2GZEA 2JBGA 1GXGA 7CEIA 1AYIA
chains in the Genus database with same CATH superfamily
1A43A 2JB0A 2PNGA 1UJZA 4HKGA 2MVUA 2K5XA 4U0AA 1VQMP 2GDYA 4XFZA 2GZIA 3EJDA 1VKUA 3G0VA 2PEOA 4H2WC 1KD1Q 4F37A 3G28A 4COCA 3NY7B 5EW5E 1KQSO 4CA3A 3CE7A 1GXGA 1M74A 7CEIA 2K92A 2PEQA 3E2DA 1IMQA 3LRYA 2AFDA 4BPFA 4GR2A 2NO8A 2VLQA 2N5HA 5KP8B 2WPTA 1M6EX 1X3OA 4DG9A 1RO2A 1AUMA 2K2QA 3CD6P 3G26A 2L6EA 5F2NA 1ZMBA 1HY8A 1BAJA 3DTJA 3GZLA 1S72P 5HGNA 2FACA 5CZDB 1Q81Q 2FADA 5I4TG 2KWLA 3CCMP 3DS2A 1YIJP 3CC2P 2N6YA 5HVCA 4XFYA 2KGEA 2KORA 1QVFO 3VRLC 1VQOP 2M5RA 1QRJA 4U0FA 1YITP 1VQLP 2VLOA 1NJIQ 3DS1A 1EIAA 4R0MA 3GZMA 2EFJA 1D1DA 2CQ8A 4NEOA 3CCQP 2OARA 1M1KQ 1Z6MA 2M8PA 2ONTA 3OW2O 4IPYA 2LL8A 3Q20A 2AVAA 2KG6A 3NTEA 4H2XC 2KW2A 3P05A 3CCSP 2EG5A 2VLPA 4PWVB 2KGDA 2L4BA 3DS3A 5HGMA 4M0IA 2CG5B 2PEIA 1KLPA 1FR2A 2N98A 1VQNP 2FQ1A 3G29A 1AYIA 1GXHA 5BS1A 2Z44A 2PEJA 3WBHA 5KP6B 2KG8A 2KOQA 2OTLP 3I55P 2M8NA 2FAEA 1K8AQ 1M90Q 2N6ZA 2KGAA 1VQKP 3DS5A 2L0QA 1N8RQ 1E0HA 3G21A 2M8LA 1Q86Q 3B4QA 1YI2P 3CCEP 3G6EP 1E6JP 2LOLA 5HGOA 4U0EA 1RNIA 4H2YC 3DPHA 1K30A 2QEXP 4U0BA 3HZQA 2K0DX 3EJBA 2GYKA 4QKOA 5HV8A 2LMLA 1YJNP 1CEIA 1ACPA 3G1IA 2JYGA 1AF8A 2FVEA 1F80D 3U43A 2PEKA 1VHNA 3CCLP 4XFXA 2JGPA 2XZ1C 3B5IA 5JPAA 4QNBA 2CGQA 1YHQP 2ROQA 4XROA 2GZJA 1M6NA 2K0XA 3CCVP 1VQ8P 2DGYA 2JQ4A 2KR5A 1VQ6P 3GKLC 1Q7YQ 3RG6C 1DNYA 1QVGO 3CC4P 5EJDA 2LTEA 2X2BA 2AF8A 1DV5A 1VQ4P 2EIAA 2GDXA 3DS4A 1T8KA 2XXMA 2PY8A 2OTJP 1L0IA 2K93A 2L22A 2EHTA 4U0DA 1VQ9P 3CC7P 2KG9A 2FVAA 2P9XA 1VQ7P 1EOQA 3MGEA 2JU2A 3M1MA 1L0HA 2KOOA 5BS2A 1ZNVA 3H47A 2MR7A 4PH0A 5DCKA 2MF4A 2KOPA 1UNKA 1MZ8A 2ERHA 1BXIA 3CMAP 2L9FA 2PENA 1GPJA 1JJ2O 2LF4A 1YJWP 1IUQA 3CMEP 2QNWA 2MY5A 3CCRP 1A8OA 2BHVA 4PH1A 1HQBA 2JAZA 2FVFA 3G1GA 5HGLA 1W2BO 2N5IA 5KP7B 1YJ9P 1IMPA 3EJEA 1NQ4A 2GZGA 2GZFA 3I56P 1Q82Q 2FQ0A 2LIUA 1VQ5P 2CNRA 2LPKA 2PEMA 5F2KA 3DS0A 1KC8Q 4GR6A 3CCUP 2LIWA 2KGCA 2Z46A 2VSQA 3CXCO 2QA4P 3HYBA 4COPA 2FHSC 2GZEA 3CPWO 3H0DA 5F2OA 3LMOA 2XV6A 3GJNA 3CCJP 3G4SP 2LKIA 2BUOA 2MR8A 3RG2A 2AFEA 1OR5A 4MRTC 3H4EA 2JO0A 2GDWA 2K94A 2MVVA 2N50A 1EMVA 2EHSA 1RO0A 2KODA 1K73Q 2FQ2A 2E1MA 2CWOA 4BPGA 3G71P 1K9MQ 2MD9A 4UHPB 1VQPP 4XRQA 4BPHA 2JU1A 4WYMA 2DNWA 2XT1A 4IZ6A 2Z45A 2JYLA 2KOSA 2VLNA 4PXHB 2JBGA 4U0CA 2XZ0D 2K0YA
chains in the Genus database with same CATH topology
3U43A 2JB0A 3GJNA 1UJZA 3GKLC 1IMQA 1GXHA 2K5XA 2JAZA 1ZNVA 4UHPB 2NO8A 2VLQA 2VLPA 2GZIA 1UNKA 1MZ8A 2WPTA 2ERHA 1BXIA 2K0DX 1IMPA 4F37A 2GYKA 2GZGA 2GZFA 4QKOA 2GZJA 1E0HA 2VLOA 1EMVA 1CEIA 1FR2A 2VLNA 5EW5E 2GZEA 2JBGA 1GXGA 7CEIA 1AYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U43 A;  2JB0 A;  3GJN A;  1UJZ A;  3GKL C;  1IMQ A;  1GXH A;  2K5X A;  2JAZ A;  1ZNV A;  4UHP B;  2NO8 A;  2VLQ A;  2VLP A;  2GZI A;  1UNK A;  1MZ8 A;  2WPT A;  2ERH A;  1BXI A;  2K0D X;  1IMP A;  4F37 A;  2GYK A;  2GZG A;  2GZF A;  4QKO A;  2GZJ A;  1E0H A;  2VLO A;  1EMV A;  1CEI A;  1FR2 A;  2VLN A;  5EW5 E;  2GZE A;  2JBG A;  1GXG A;  7CEI A;  1AYI A; 
#chains in the Genus database with same CATH topology
 1A43 A;  2JB0 A;  2PNG A;  1UJZ A;  4HKG A;  2MVU A;  2K5X A;  4U0A A;  1VQM P;  2GDY A;  4XFZ A;  2GZI A;  3EJD A;  1VKU A;  3G0V A;  2PEO A;  4H2W C;  1KD1 Q;  4F37 A;  3G28 A;  4COC A;  3NY7 B;  5EW5 E;  1KQS O;  4CA3 A;  3CE7 A;  1GXG A;  1M74 A;  7CEI A;  2K92 A;  2PEQ A;  3E2D A;  1IMQ A;  3LRY A;  2AFD A;  4BPF A;  4GR2 A;  2NO8 A;  2VLQ A;  2N5H A;  5KP8 B;  2WPT A;  1M6E X;  1X3O A;  4DG9 A;  1RO2 A;  1AUM A;  2K2Q A;  3CD6 P;  3G26 A;  2L6E A;  5F2N A;  1ZMB A;  1HY8 A;  1BAJ A;  3DTJ A;  3GZL A;  1S72 P;  5HGN A;  2FAC A;  5CZD B;  1Q81 Q;  2FAD A;  5I4T G;  2KWL A;  3CCM P;  3DS2 A;  1YIJ P;  3CC2 P;  2N6Y A;  5HVC A;  4XFY A;  2KGE A;  2KOR A;  1QVF O;  3VRL C;  1VQO P;  2M5R A;  1QRJ A;  4U0F A;  1YIT P;  1VQL P;  2VLO A;  1NJI Q;  3DS1 A;  1EIA A;  4R0M A;  3GZM A;  2EFJ A;  1D1D A;  2CQ8 A;  4NEO A;  3CCQ P;  2OAR A;  1M1K Q;  1Z6M A;  2M8P A;  2ONT A;  3OW2 O;  4IPY A;  2LL8 A;  3Q20 A;  2AVA A;  2KG6 A;  3NTE A;  4H2X C;  2KW2 A;  3P05 A;  3CCS P;  2EG5 A;  2VLP A;  4PWV B;  2KGD A;  2L4B A;  3DS3 A;  5HGM A;  4M0I A;  2CG5 B;  2PEI A;  1KLP A;  1FR2 A;  2N98 A;  1VQN P;  2FQ1 A;  3G29 A;  1AYI A;  1GXH A;  5BS1 A;  2Z44 A;  2PEJ A;  3WBH A;  5KP6 B;  2KG8 A;  2KOQ A;  2OTL P;  3I55 P;  2M8N A;  2FAE A;  1K8A Q;  1M90 Q;  2N6Z A;  2KGA A;  1VQK P;  3DS5 A;  2L0Q A;  1N8R Q;  1E0H A;  3G21 A;  2M8L A;  1Q86 Q;  3B4Q A;  1YI2 P;  3CCE P;  3G6E P;  1E6J P;  2LOL A;  5HGO A;  4U0E A;  1RNI A;  4H2Y C;  3DPH A;  1K30 A;  2QEX P;  4U0B A;  3HZQ A;  2K0D X;  3EJB A;  2GYK A;  4QKO A;  5HV8 A;  2LML A;  1YJN P;  1CEI A;  1ACP A;  3G1I A;  2JYG A;  1AF8 A;  2FVE A;  1F80 D;  3U43 A;  2PEK A;  1VHN A;  3CCL P;  4XFX A;  2JGP A;  2XZ1 C;  3B5I A;  5JPA A;  4QNB A;  2CGQ A;  1YHQ P;  2ROQ A;  4XRO A;  2GZJ A;  1M6N A;  2K0X A;  3CCV P;  1VQ8 P;  2DGY A;  2JQ4 A;  2KR5 A;  1VQ6 P;  3GKL C;  1Q7Y Q;  3RG6 C;  1DNY A;  1QVG O;  3CC4 P;  5EJD A;  2LTE A;  2X2B A;  2AF8 A;  1DV5 A;  1VQ4 P;  2EIA A;  2GDX A;  3DS4 A;  1T8K A;  2XXM A;  2PY8 A;  2OTJ P;  1L0I A;  2K93 A;  2L22 A;  2EHT A;  4U0D A;  1VQ9 P;  3CC7 P;  2KG9 A;  2FVA A;  2P9X A;  1VQ7 P;  1EOQ A;  3MGE A;  2JU2 A;  3M1M A;  1L0H A;  2KOO A;  5BS2 A;  1ZNV A;  3H47 A;  2MR7 A;  4PH0 A;  5DCK A;  2MF4 A;  2KOP A;  1UNK A;  1MZ8 A;  2ERH A;  1BXI A;  3CMA P;  2L9F A;  2PEN A;  1GPJ A;  1JJ2 O;  2LF4 A;  1YJW P;  1IUQ A;  3CME P;  2QNW A;  2MY5 A;  3CCR P;  1A8O A;  2BHV A;  4PH1 A;  1HQB A;  2JAZ A;  2FVF A;  3G1G A;  5HGL A;  1W2B O;  2N5I A;  5KP7 B;  1YJ9 P;  1IMP A;  3EJE A;  1NQ4 A;  2GZG A;  2GZF A;  3I56 P;  1Q82 Q;  2FQ0 A;  2LIU A;  1VQ5 P;  2CNR A;  2LPK A;  2PEM A;  5F2K A;  3DS0 A;  1KC8 Q;  4GR6 A;  3CCU P;  2LIW A;  2KGC A;  2Z46 A;  2VSQ A;  3CXC O;  2QA4 P;  3HYB A;  4COP A;  2FHS C;  2GZE A;  3CPW O;  3H0D A;  5F2O A;  3LMO A;  2XV6 A;  3GJN A;  3CCJ P;  3G4S P;  2LKI A;  2BUO A;  2MR8 A;  3RG2 A;  2AFE A;  1OR5 A;  4MRT C;  3H4E A;  2JO0 A;  2GDW A;  2K94 A;  2MVV A;  2N50 A;  1EMV A;  2EHS A;  1RO0 A;  2KOD A;  1K73 Q;  2FQ2 A;  2E1M A;  2CWO A;  4BPG A;  3G71 P;  1K9M Q;  2MD9 A;  4UHP B;  1VQP P;  4XRQ A;  4BPH A;  2JU1 A;  4WYM A;  2DNW A;  2XT1 A;  4IZ6 A;  2Z45 A;  2JYL A;  2KOS A;  2VLN A;  4PXH B;  2JBG A;  4U0C A;  2XZ0 D;  2K0Y A; 
#chains in the Genus database with same CATH homology
 3U43 A;  2JB0 A;  3GJN A;  1UJZ A;  3GKL C;  1IMQ A;  1GXH A;  2K5X A;  2JAZ A;  1ZNV A;  4UHP B;  2NO8 A;  2VLQ A;  2VLP A;  2GZI A;  1UNK A;  1MZ8 A;  2WPT A;  2ERH A;  1BXI A;  2K0D X;  1IMP A;  4F37 A;  2GYK A;  2GZG A;  2GZF A;  4QKO A;  2GZJ A;  1E0H A;  2VLO A;  1EMV A;  1CEI A;  1FR2 A;  2VLN A;  5EW5 E;  2GZE A;  2JBG A;  1GXG A;  7CEI A;  1AYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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