1EQYS

Complex between rabbit muscle alpha-actin: human gelsolin domain 1
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords GELSOLIN
publication title Structure of gelsolin segment 1-actin complex and the mechanism of filament severing.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2000-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1eqyS00
2MV2A 5KYWA 5KYWB 1Q8XA 1D0NA 2FF3A 1WFSA 3EFOA 3EFOB 2FH4A 2MP4A 1AK7A 1EQYS 1M2VA 1M2VB 1NM1G 2NUTA 2NUTB 2VIKA 2L72A 1T3XA 2FH2A 5DD2A 5L6WC 3EH2A 1QPVA 3CJBG 1H1VG 2VILA 3EGXA 3EGXB 2NUPB 1AHQA 1HQZ1 3FFKA 1CFYA 1ESVS 4S10C 1YVNG 1T2LA 5HVKB 5KYXA 4CBUG 1M2OA 1PCXA 1D4XG 4PKGG 1MDUA 1SVYA 3A5MS 1AK6A 3Q2BA 1DEJS 1TMWA 1YAGG 1UDMA 4KEEA 3L50A 1J72A 1SVRA 1V6FA 1WNJA 2MOTA 2XFAA 2D8BA 3FG7A 1COFA 5A1MA 4CBWG 2FH1A 4Z94G 5HVKD 3A5OS 1NMDG 1C0FS 2FF6G 2LXXA 5FAEA 5IVUA 1CNUA 5FAFA 3FG6A 3A5NS 1PD1A 1JHWA 5KYXB 2XF1A 1NPHA 1P8ZG 1VKKA 1TVJA 4KEDA 3EGDA 1RGIG 1P8XA 3A5LS 3CIPG 3EGDB 1C0GS 1M4JA 2I2QA 1PD0A 1VFQA 2LLFA 2W0IA 3CI5G 3EH1A 5KYNA 1WM4A 5KYYA 5KYYB 2QTVA 4PKHB 1T3YA 4KEFA 3FFNA 1F7SA 1SVQA 3TU5B 1T44G 5KYUA 5KYUB 2VACA 1NLVG 2KVKA 1Q8GA 3EG9B 3EG9A 1X67A 2LJ8A 4JD2H 4CBXG 2FH3A 2HD7A 4PKIG 1KCQA 4BEX1 2NUPA 2FGHA 3DAWB 4LIZA 3CJCG
chains in the Genus database with same CATH superfamily
2MV2A 5KYWA 5KYWB 1Q8XA 1D0NA 2FF3A 1WFSA 3EFOA 3EFOB 2FH4A 2MP4A 1AK7A 1EQYS 1M2VA 1M2VB 1NM1G 2NUTA 2NUTB 2VIKA 2L72A 1T3XA 2FH2A 5DD2A 5L6WC 3EH2A 1QPVA 3CJBG 1H1VG 2VILA 3EGXA 3EGXB 2NUPB 1AHQA 1HQZ1 3FFKA 1CFYA 1ESVS 4S10C 1YVNG 1T2LA 5HVKB 5KYXA 4CBUG 1M2OA 1PCXA 1D4XG 4PKGG 1MDUA 1SVYA 3A5MS 1AK6A 3Q2BA 1DEJS 1TMWA 1YAGG 1UDMA 4KEEA 3L50A 1J72A 1SVRA 1V6FA 1WNJA 2MOTA 2XFAA 2D8BA 3FG7A 1COFA 5A1MA 4CBWG 2FH1A 4Z94G 5HVKD 3A5OS 1NMDG 1C0FS 2FF6G 2LXXA 5FAEA 5IVUA 1CNUA 5FAFA 3FG6A 3A5NS 1PD1A 1JHWA 5KYXB 2XF1A 1NPHA 1P8ZG 1VKKA 1TVJA 4KEDA 3EGDA 1RGIG 1P8XA 3A5LS 3CIPG 3EGDB 1C0GS 1M4JA 2I2QA 1PD0A 1VFQA 2LLFA 2W0IA 3CI5G 3EH1A 5KYNA 1WM4A 5KYYA 5KYYB 2QTVA 4PKHB 1T3YA 4KEFA 3FFNA 1F7SA 1SVQA 3TU5B 1T44G 5KYUA 5KYUB 2VACA 1NLVG 2KVKA 1Q8GA 3EG9B 3EG9A 1X67A 2LJ8A 4JD2H 4CBXG 2FH3A 2HD7A 3DA7A 4PKIG 1KCQA 4BEX1 2NUPA 2FGHA 3DAWB 4LIZA 3CJCG
chains in the Genus database with same CATH topology
2MV2A 5KYWA 5KYWB 1Q8XA 1D0NA 2FF3A 1WFSA 3EFOA 3EFOB 2FH4A 2MP4A 1AK7A 1EQYS 1M2VA 1M2VB 1NM1G 2NUTA 2NUTB 2VIKA 2L72A 1T3XA 2FH2A 5DD2A 5L6WC 3EH2A 1QPVA 3CJBG 1H1VG 2VILA 3EGXA 3EGXB 2NUPB 1AHQA 1HQZ1 3FFKA 1CFYA 1ESVS 4S10C 1YVNG 1T2LA 5HVKB 5KYXA 4CBUG 1M2OA 1PCXA 1D4XG 4PKGG 1MDUA 1SVYA 3A5MS 1AK6A 3Q2BA 1DEJS 1TMWA 1YAGG 1UDMA 4KEEA 3L50A 1J72A 1SVRA 1V6FA 1WNJA 2MOTA 2XFAA 2D8BA 3FG7A 1COFA 5A1MA 4CBWG 2FH1A 4Z94G 5HVKD 3A5OS 1NMDG 1C0FS 2FF6G 2LXXA 5FAEA 5IVUA 1CNUA 5FAFA 3FG6A 3A5NS 1PD1A 1JHWA 5KYXB 2XF1A 1NPHA 1P8ZG 1VKKA 1TVJA 4KEDA 3EGDA 1RGIG 1P8XA 3A5LS 3CIPG 3EGDB 1C0GS 1M4JA 2I2QA 1PD0A 1VFQA 2LLFA 2W0IA 3CI5G 3EH1A 5KYNA 1WM4A 5KYYA 5KYYB 2QTVA 4PKHB 1T3YA 4KEFA 3FFNA 1F7SA 1SVQA 3TU5B 1T44G 5KYUA 5KYUB 2VACA 1NLVG 2KVKA 1Q8GA 3EG9B 3EG9A 1X67A 2LJ8A 4JD2H 4CBXG 2FH3A 2HD7A 3DA7A 4PKIG 1KCQA 4BEX1 2NUPA 2FGHA 3DAWB 4LIZA 3CJCG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MV2 A;  5KYW A;  5KYW B;  1Q8X A;  1D0N A;  2FF3 A;  1WFS A;  3EFO A;  3EFO B;  2FH4 A;  2MP4 A;  1AK7 A;  1EQY S;  1M2V A;  1M2V B;  1NM1 G;  2NUT A;  2NUT B;  2VIK A;  2L72 A;  1T3X A;  2FH2 A;  5DD2 A;  5L6W C;  3EH2 A;  1QPV A;  3CJB G;  1H1V G;  2VIL A;  3EGX A;  3EGX B;  2NUP B;  1AHQ A;  1HQZ 1;  3FFK A;  1CFY A;  1ESV S;  4S10 C;  1YVN G;  1T2L A;  5HVK B;  5KYX A;  4CBU G;  1M2O A;  1PCX A;  1D4X G;  4PKG G;  1MDU A;  1SVY A;  3A5M S;  1AK6 A;  3Q2B A;  1DEJ S;  1TMW A;  1YAG G;  1UDM A;  4KEE A;  3L50 A;  1J72 A;  1SVR A;  1V6F A;  1WNJ A;  2MOT A;  2XFA A;  2D8B A;  3FG7 A;  1COF A;  5A1M A;  4CBW G;  2FH1 A;  4Z94 G;  5HVK D;  3A5O S;  1NMD G;  1C0F S;  2FF6 G;  2LXX A;  5FAE A;  5IVU A;  1CNU A;  5FAF A;  3FG6 A;  3A5N S;  1PD1 A;  1JHW A;  5KYX B;  2XF1 A;  1NPH A;  1P8Z G;  1VKK A;  1TVJ A;  4KED A;  3EGD A;  1RGI G;  1P8X A;  3A5L S;  3CIP G;  3EGD B;  1C0G S;  1M4J A;  2I2Q A;  1PD0 A;  1VFQ A;  2LLF A;  2W0I A;  3CI5 G;  3EH1 A;  5KYN A;  1WM4 A;  5KYY A;  5KYY B;  2QTV A;  4PKH B;  1T3Y A;  4KEF A;  3FFN A;  1F7S A;  1SVQ A;  3TU5 B;  1T44 G;  5KYU A;  5KYU B;  2VAC A;  1NLV G;  2KVK A;  1Q8G A;  3EG9 B;  3EG9 A;  1X67 A;  2LJ8 A;  4JD2 H;  4CBX G;  2FH3 A;  2HD7 A;  4PKI G;  1KCQ A;  4BEX 1;  2NUP A;  2FGH A;  3DAW B;  4LIZ A;  3CJC G; 
#chains in the Genus database with same CATH topology
 2MV2 A;  5KYW A;  5KYW B;  1Q8X A;  1D0N A;  2FF3 A;  1WFS A;  3EFO A;  3EFO B;  2FH4 A;  2MP4 A;  1AK7 A;  1EQY S;  1M2V A;  1M2V B;  1NM1 G;  2NUT A;  2NUT B;  2VIK A;  2L72 A;  1T3X A;  2FH2 A;  5DD2 A;  5L6W C;  3EH2 A;  1QPV A;  3CJB G;  1H1V G;  2VIL A;  3EGX A;  3EGX B;  2NUP B;  1AHQ A;  1HQZ 1;  3FFK A;  1CFY A;  1ESV S;  4S10 C;  1YVN G;  1T2L A;  5HVK B;  5KYX A;  4CBU G;  1M2O A;  1PCX A;  1D4X G;  4PKG G;  1MDU A;  1SVY A;  3A5M S;  1AK6 A;  3Q2B A;  1DEJ S;  1TMW A;  1YAG G;  1UDM A;  4KEE A;  3L50 A;  1J72 A;  1SVR A;  1V6F A;  1WNJ A;  2MOT A;  2XFA A;  2D8B A;  3FG7 A;  1COF A;  5A1M A;  4CBW G;  2FH1 A;  4Z94 G;  5HVK D;  3A5O S;  1NMD G;  1C0F S;  2FF6 G;  2LXX A;  5FAE A;  5IVU A;  1CNU A;  5FAF A;  3FG6 A;  3A5N S;  1PD1 A;  1JHW A;  5KYX B;  2XF1 A;  1NPH A;  1P8Z G;  1VKK A;  1TVJ A;  4KED A;  3EGD A;  1RGI G;  1P8X A;  3A5L S;  3CIP G;  3EGD B;  1C0G S;  1M4J A;  2I2Q A;  1PD0 A;  1VFQ A;  2LLF A;  2W0I A;  3CI5 G;  3EH1 A;  5KYN A;  1WM4 A;  5KYY A;  5KYY B;  2QTV A;  4PKH B;  1T3Y A;  4KEF A;  3FFN A;  1F7S A;  1SVQ A;  3TU5 B;  1T44 G;  5KYU A;  5KYU B;  2VAC A;  1NLV G;  2KVK A;  1Q8G A;  3EG9 B;  3EG9 A;  1X67 A;  2LJ8 A;  4JD2 H;  4CBX G;  2FH3 A;  2HD7 A;  3DA7 A;  4PKI G;  1KCQ A;  4BEX 1;  2NUP A;  2FGH A;  3DAW B;  4LIZ A;  3CJC G; 
#chains in the Genus database with same CATH homology
 2MV2 A;  5KYW A;  5KYW B;  1Q8X A;  1D0N A;  2FF3 A;  1WFS A;  3EFO A;  3EFO B;  2FH4 A;  2MP4 A;  1AK7 A;  1EQY S;  1M2V A;  1M2V B;  1NM1 G;  2NUT A;  2NUT B;  2VIK A;  2L72 A;  1T3X A;  2FH2 A;  5DD2 A;  5L6W C;  3EH2 A;  1QPV A;  3CJB G;  1H1V G;  2VIL A;  3EGX A;  3EGX B;  2NUP B;  1AHQ A;  1HQZ 1;  3FFK A;  1CFY A;  1ESV S;  4S10 C;  1YVN G;  1T2L A;  5HVK B;  5KYX A;  4CBU G;  1M2O A;  1PCX A;  1D4X G;  4PKG G;  1MDU A;  1SVY A;  3A5M S;  1AK6 A;  3Q2B A;  1DEJ S;  1TMW A;  1YAG G;  1UDM A;  4KEE A;  3L50 A;  1J72 A;  1SVR A;  1V6F A;  1WNJ A;  2MOT A;  2XFA A;  2D8B A;  3FG7 A;  1COF A;  5A1M A;  4CBW G;  2FH1 A;  4Z94 G;  5HVK D;  3A5O S;  1NMD G;  1C0F S;  2FF6 G;  2LXX A;  5FAE A;  5IVU A;  1CNU A;  5FAF A;  3FG6 A;  3A5N S;  1PD1 A;  1JHW A;  5KYX B;  2XF1 A;  1NPH A;  1P8Z G;  1VKK A;  1TVJ A;  4KED A;  3EGD A;  1RGI G;  1P8X A;  3A5L S;  3CIP G;  3EGD B;  1C0G S;  1M4J A;  2I2Q A;  1PD0 A;  1VFQ A;  2LLF A;  2W0I A;  3CI5 G;  3EH1 A;  5KYN A;  1WM4 A;  5KYY A;  5KYY B;  2QTV A;  4PKH B;  1T3Y A;  4KEF A;  3FFN A;  1F7S A;  1SVQ A;  3TU5 B;  1T44 G;  5KYU A;  5KYU B;  2VAC A;  1NLV G;  2KVK A;  1Q8G A;  3EG9 B;  3EG9 A;  1X67 A;  2LJ8 A;  4JD2 H;  4CBX G;  2FH3 A;  2HD7 A;  3DA7 A;  4PKI G;  1KCQ A;  4BEX 1;  2NUP A;  2FGH A;  3DAW B;  4LIZ A;  3CJC G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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