1F4JA

Structure of tetragonal crystals of human erythrocyte catalase
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
sequence length
479
structure length
479
Chain Sequence
ADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKYNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords CATALASE
publication title Structure of tetragonal crystals of human erythrocyte catalase.
pubmed doi rcsb
total genus 150
structure length 479
sequence length 479
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2000-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1f4jA00
2A9EA 2CAGA 3TTWA 4AUMA 4ENWA 3PQ2A 4ENQA 1GGKA 1QWMA 2XQ1A 3DY5A 1CF9A 1GGEA 4E37A 3P9PA 4QORA 3EJ6A 1M7SA 4ENSA 1P81A 1NM0A 1QWSA 1GGFA 1QWLA 3TTXA 4ENVA 3PQ4A 3PQ3A 1IPHA 1GWHA 3PQ8A 1GWFA 1A4EA 2XF2A 3PQ5A 4B2YA 2CAHA 4AUNA 3TTTA 4AUEA 4AULA 1F4JA 1GWEA 2IUFA 4ENTA 1H7KA 1M85A 1MQFA 3PQ7A 1GGJA 4B40A 4QOQA 4B31A 3VU3A 3ZJ4A 4AJ9A 4QOLA 1SY7A 4QOMA 3PQ6A 2IQFA 3P9RA 1U5UA 4CABA 4QOOA 5BV2P 1P7ZA 4QONA 1GG9A 1P7YA 1SI8A 4B5KA 3ZJ5A 4BIMA 4BFLA 1H6NA 4QOPA 1QF7A 1E93A 4B7AA 3P9SA 3P9QA 4ENPA 3HB6A 1HBZA 4ENUA 2J2MA 1GGHA 1P80A 3TTVA 2ISAA 3TTUA 4ENRA
chains in the Genus database with same CATH superfamily
2A9EA 2CAGA 3TTWA 8CATA 3RE8A 4AUMA 4ENWA 3PQ2A 4ENQA 1GGKA 1QWMA 2XQ1A 3DY5A 1CF9A 1GGEA 4E37A 3P9PA 4QORA 3EJ6A 1M7SA 4ENSA 1P81A 5GKNA 1NM0A 1QWSA 1GGFA 4B7FA 1TH3A 1QWLA 3TTXA 4ENVA 3E4WA 3PQ4A 3PQ3A 1IPHA 1GWHA 3PQ8A 1GWFA 1DGHA 3E4YA 1A4EA 2XF2A 3PQ5A 4B2YA 2CAHA 4AUNA 3TTTA 4AUEA 4AULA 1F4JA 1DGFA 1GWEA 2IUFA 4BLCA 3J7BA 4ENTA 1H7KA 1M85A 1MQFA 3PQ7A 1GGJA 4B40A 4QOQA 4B31A 3VU3A 3ZJ4A 4AJ9A 4QOLA 1SY7A 4QOMA 3PQ6A 2IQFA 3P9RA 1U5UA 4CABA 4B7GA 4QOOA 5BV2P 1P7ZA 4QONA 1TH4A 1GG9A 1P7YA 1SI8A 4B5KA 1TGUA 3ZJ5A 1DGBA 4BIMA 4BFLA 1H6NA 4QOPA 4B7HA 3NWLA 1QF7A 1E93A 4B7AA 3P9SA 3P9QA 4ENPA 3HB6A 3RGSA 1HBZA 3RGPA 1TH2A 4ENUA 2J2MA 1GGHA 7CATA 1P80A 1QQWA 3TTVA 2ISAA 3TTUA 1DGHB 1DGGA 4ENRA
chains in the Genus database with same CATH topology
2A9EA 2CAGA 3TTWA 4AUMA 4ENWA 3PQ2A 4ENQA 1GGKA 1QWMA 2XQ1A 3DY5A 1CF9A 1GGEA 4E37A 3P9PA 4QORA 3EJ6A 1M7SA 4ENSA 1P81A 1NM0A 1QWSA 1GGFA 1QWLA 3TTXA 4ENVA 3PQ4A 3PQ3A 1IPHA 1GWHA 3PQ8A 1GWFA 1A4EA 2XF2A 3PQ5A 4B2YA 2CAHA 4AUNA 3TTTA 4AUEA 4AULA 1F4JA 1GWEA 2IUFA 4ENTA 1H7KA 1M85A 1MQFA 3PQ7A 1GGJA 4B40A 4QOQA 4B31A 3VU3A 3ZJ4A 4AJ9A 4QOLA 1SY7A 4QOMA 3PQ6A 2IQFA 3P9RA 1U5UA 4CABA 4QOOA 5BV2P 1P7ZA 4QONA 1GG9A 1P7YA 1SI8A 4B5KA 3ZJ5A 4BIMA 4BFLA 1H6NA 4QOPA 1QF7A 1E93A 4B7AA 3P9SA 3P9QA 4ENPA 3HB6A 1HBZA 4ENUA 2J2MA 1GGHA 1P80A 3TTVA 2ISAA 3TTUA 4ENRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A9E A;  2CAG A;  3TTW A;  4AUM A;  4ENW A;  3PQ2 A;  4ENQ A;  1GGK A;  1QWM A;  2XQ1 A;  3DY5 A;  1CF9 A;  1GGE A;  4E37 A;  3P9P A;  4QOR A;  3EJ6 A;  1M7S A;  4ENS A;  1P81 A;  1NM0 A;  1QWS A;  1GGF A;  1QWL A;  3TTX A;  4ENV A;  3PQ4 A;  3PQ3 A;  1IPH A;  1GWH A;  3PQ8 A;  1GWF A;  1A4E A;  2XF2 A;  3PQ5 A;  4B2Y A;  2CAH A;  4AUN A;  3TTT A;  4AUE A;  4AUL A;  1F4J A;  1GWE A;  2IUF A;  4ENT A;  1H7K A;  1M85 A;  1MQF A;  3PQ7 A;  1GGJ A;  4B40 A;  4QOQ A;  4B31 A;  3VU3 A;  3ZJ4 A;  4AJ9 A;  4QOL A;  1SY7 A;  4QOM A;  3PQ6 A;  2IQF A;  3P9R A;  1U5U A;  4CAB A;  4QOO A;  5BV2 P;  1P7Z A;  4QON A;  1GG9 A;  1P7Y A;  1SI8 A;  4B5K A;  3ZJ5 A;  4BIM A;  4BFL A;  1H6N A;  4QOP A;  1QF7 A;  1E93 A;  4B7A A;  3P9S A;  3P9Q A;  4ENP A;  3HB6 A;  1HBZ A;  4ENU A;  2J2M A;  1GGH A;  1P80 A;  3TTV A;  2ISA A;  3TTU A;  4ENR A; 
#chains in the Genus database with same CATH topology
 2A9E A;  2CAG A;  3TTW A;  8CAT A;  3RE8 A;  4AUM A;  4ENW A;  3PQ2 A;  4ENQ A;  1GGK A;  1QWM A;  2XQ1 A;  3DY5 A;  1CF9 A;  1GGE A;  4E37 A;  3P9P A;  4QOR A;  3EJ6 A;  1M7S A;  4ENS A;  1P81 A;  5GKN A;  1NM0 A;  1QWS A;  1GGF A;  4B7F A;  1TH3 A;  1QWL A;  3TTX A;  4ENV A;  3E4W A;  3PQ4 A;  3PQ3 A;  1IPH A;  1GWH A;  3PQ8 A;  1GWF A;  1DGH A;  3E4Y A;  1A4E A;  2XF2 A;  3PQ5 A;  4B2Y A;  2CAH A;  4AUN A;  3TTT A;  4AUE A;  4AUL A;  1F4J A;  1DGF A;  1GWE A;  2IUF A;  4BLC A;  3J7B A;  4ENT A;  1H7K A;  1M85 A;  1MQF A;  3PQ7 A;  1GGJ A;  4B40 A;  4QOQ A;  4B31 A;  3VU3 A;  3ZJ4 A;  4AJ9 A;  4QOL A;  1SY7 A;  4QOM A;  3PQ6 A;  2IQF A;  3P9R A;  1U5U A;  4CAB A;  4B7G A;  4QOO A;  5BV2 P;  1P7Z A;  4QON A;  1TH4 A;  1GG9 A;  1P7Y A;  1SI8 A;  4B5K A;  1TGU A;  3ZJ5 A;  1DGB A;  4BIM A;  4BFL A;  1H6N A;  4QOP A;  4B7H A;  3NWL A;  1QF7 A;  1E93 A;  4B7A A;  3P9S A;  3P9Q A;  4ENP A;  3HB6 A;  3RGS A;  1HBZ A;  3RGP A;  1TH2 A;  4ENU A;  2J2M A;  1GGH A;  7CAT A;  1P80 A;  1QQW A;  3TTV A;  2ISA A;  3TTU A;  1DGH B;  1DGG A;  4ENR A; 
#chains in the Genus database with same CATH homology
 2A9E A;  2CAG A;  3TTW A;  4AUM A;  4ENW A;  3PQ2 A;  4ENQ A;  1GGK A;  1QWM A;  2XQ1 A;  3DY5 A;  1CF9 A;  1GGE A;  4E37 A;  3P9P A;  4QOR A;  3EJ6 A;  1M7S A;  4ENS A;  1P81 A;  1NM0 A;  1QWS A;  1GGF A;  1QWL A;  3TTX A;  4ENV A;  3PQ4 A;  3PQ3 A;  1IPH A;  1GWH A;  3PQ8 A;  1GWF A;  1A4E A;  2XF2 A;  3PQ5 A;  4B2Y A;  2CAH A;  4AUN A;  3TTT A;  4AUE A;  4AUL A;  1F4J A;  1GWE A;  2IUF A;  4ENT A;  1H7K A;  1M85 A;  1MQF A;  3PQ7 A;  1GGJ A;  4B40 A;  4QOQ A;  4B31 A;  3VU3 A;  3ZJ4 A;  4AJ9 A;  4QOL A;  1SY7 A;  4QOM A;  3PQ6 A;  2IQF A;  3P9R A;  1U5U A;  4CAB A;  4QOO A;  5BV2 P;  1P7Z A;  4QON A;  1GG9 A;  1P7Y A;  1SI8 A;  4B5K A;  3ZJ5 A;  4BIM A;  4BFL A;  1H6N A;  4QOP A;  1QF7 A;  1E93 A;  4B7A A;  3P9S A;  3P9Q A;  4ENP A;  3HB6 A;  1HBZ A;  4ENU A;  2J2M A;  1GGH A;  1P80 A;  3TTV A;  2ISA A;  3TTU A;  4ENR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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