1GQ6A

Proclavaminate amidino hydrolase from streptomyces clavuligerus
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
Knots found
sequence length
301
structure length
295
Chain Sequence
SPRYAQIPTFMRLPHDPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDLINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROCLAVAMINATE AMIDINO HYDROLASE
publication title Oligomeric Structure of Proclavaminic Acid Amidino Hydrolase: Evolution of a Hydrolytic Enzyme in Clavulanic Acid Biosynthesis
pubmed doi rcsb
source organism Streptomyces clavuligerus
total genus 109
structure length 295
sequence length 301
chains with identical sequence B, C
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.22: Proclavaminate amidinohydrolase.
pdb deposition date 2001-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1gq6A00
4IE1A 2PHOA 1D3VA 3GN0A 1P8SA 3E8ZA 2A0MA 1TBLA 4Q3RA 5CEVA 1WVAA 1WOGA 3NIPA 4GWCA 4HXQA 1XFKA 2CEVA 1PQ3A 3RLAA 3E6VA 1P8QA 4Q3RC 3E8QA 4RHLA 3SKKA 4MYNA 4IXVA 4IU0A 1P8PA 4RHQA 3SL1A 4CEVA 4RHJA 1P8MA 1HQXA 4GSVA 4FCKA 1ZPEA 3SL0A 3LP4A 4IU1A 2AEBA 3THJA 4GSMA 5RLAA 4Q3VA 4Q3SA 4RLAA 1WVBA 4MYLA 4IU4A 1R1OA 2PLLA 1TBHA 1P8RA 3NIQA 3MFWA 3NIOA 1P8NA 1CEVA 4I06A 4HZEA 1WOIA 2EF4A 1T4TA 3THHA 4RHMA 1HQFA 3F80A 3CEVA 3M1RA 4HWWA 4GSZA 1HQGA 3DJ8A 4IU5A 1T5GA 1T4SA 1RLAA 1T4PA 1TBJA 4DZ4A 1GQ6A 4RHKA 3MJLA 4Q3UA 4MYFA 1HQHA 3TF3A 3TH7A 4Q40A 3PZLA 1ZPGA 1GQ7A 3E6KA 4MYKA 4ITYA 1WOHA 1T5FA 3GMZA 4Q3TA 3MFVA 4Q41A 1HQ5A 1T4RA 2EIVA 3LHLA 4G3HA 1P8OA 4IE3A 3LP7A 2PHAA 4FCIA 4RHIA 5HJ9A 3MMRA 4Q3PA 4IE2A 2RLAA 4Q42A 1TA1A 3SJTA 2ZAVA 3THEA 3E9BA 4IXUA 2EF5A 4Q3QA 3KV2A 4GWDA 5HJAA 4MXRA
chains in the Genus database with same CATH superfamily
4IE1A 2PHOA 1D3VA 4QA5A 4BZ6A 3GN0A 1P8SA 5JI5A 3C10A 1W22A 2A0MA 3E8ZA 1TBLA 4Q3RA 5CEVA 1WVAA 1WOGA 3NIPA 4GWCA 4HXQA 1XFKA 5EEFA 2CEVA 3MENA 2V5XA 5EFBD 1C3PA 4BZ9A 1PQ3A 3RLAA 3SFFA 3E6VA 5FCWA 1P8QA 4Q3RC 5FUEA 3E8QA 4RHLA 5IX0A 3SKKA 3Q9BA 4MYNA 4QA7A 3C0YA 5EEIA 1T64A 5EFHA 3MAXA 2VQMA 4IXVA 2VQVA 4IU0A 1P8PA 4RHQA 3SL1A 3EW8A 4CEVA 4RHJA 1P8MA 1HQXA 4GSVA 5G3WA 4FCKA 1ZPEA 5DC8A 3SL0A 3LP4A 4IU1A 1C3SA 5DC6A 5THSA 3MZ7A 2AEBA 3RQDA 2VQQA 3THJA 4GSMA 5RLAA 4Q3VA 4Q3SA 5G0IA 3SFHA 4BKXB 5THTA 4RLAA 1WVBA 4MYLA 1ZZ3A 4IU4A 1R1OA 2PLLA 1TBHA 5EFKB 4RN0A 3Q9EA 5D1CA 1P8RA 3NIQA 3MFWA 5G0HA 3NIOA 1P8NA 1CEVA 4I06A 3ZNRA 4QA6A 4HZEA 2VQOA 1WOIA 2EF4A 5EEKA 4ZURA 1T4TA 5G0YA 3THHA 4RHMA 1HQFA 3F80A 3F06A 5EFJD 4CBTA 4CBYA 2VQWG 3CEVA 3M1RA 3C0ZA 4HWWA 5EF8A 5G0GA 5G13A 4GSZA 1HQGA 3Q9FA 3DJ8A 4ZUNA 5DC5A 5G0XA 5G11A 4IU5A 1T5GA 1T4SA 1RLAA 1T4PA 1TBJA 5G1CA 4DZ4A 1GQ6A 2V5WA 5ICNB 3EZTA 2VCGA 4RHKA 3MJLA 4QA0A 5DC7A 5EENA 5G1AA 4Q3UA 4BZ8A 2VQJA 1T67A 3MZ6A 4MYFA 5IWGA 1HQHA 3TF3A 3TH7A 5EEMA 3MZ4A 4LY1A 4ZUOA 4Q40A 3EWFA 3PZLA 1ZPGA 3F07A 3MZ3A 1GQ7A 1VKGA 3E6KA 4LXZA 4MYKA 4ZUPA 4A69A 2GH6A 4ZUQA 3Q9CA 3EZPA 4ITYA 1WOHA 1T5FA 1ZZ0A 3GMZA 4QA2A 5A2SA 1ZZ1A 5G12A 4QA3A 4Q3TA 5EF7A 5G1BA 4ZUMA 1C3RA 3MFVA 3F0RA 1HQ5A 4Q41A 1T4RA 2EIVA 3LHLA 5BWZA 3ZNSA 4G3HA 5G0JA 4BZ5A 1P8OA 4IE3A 5THVA 5EFNA 3LP7A 2PHAA 4FCIA 4RHIA 4QA1A 3MMRA 4Q3PA 5HJ9A 4BZ7A 4IE2A 2RLAA 4QA4A 4Q42A 1TA1A 3SJTA 5LI3A 2ZAVA 3THEA 5EFGA 5G10A 4RN1A 3E9BA 4IXUA 4RN2A 1T69A 5D1BA 4CQFA 2EF5A 4Q3QA 5THUA 3KV2A 4GWDA 5D1DA 5G17A 5HJAA 4MXRA
chains in the Genus database with same CATH topology
4IE1A 2PHOA 1D3VA 3GN0A 1P8SA 3E8ZA 2A0MA 1TBLA 4Q3RA 5CEVA 1WVAA 1WOGA 3NIPA 4GWCA 4HXQA 1XFKA 2CEVA 1PQ3A 3RLAA 3E6VA 1P8QA 4Q3RC 3E8QA 4RHLA 3SKKA 4MYNA 4IXVA 4IU0A 1P8PA 4RHQA 3SL1A 4CEVA 4RHJA 1P8MA 1HQXA 4GSVA 4FCKA 1ZPEA 3SL0A 3LP4A 4IU1A 2AEBA 3THJA 4GSMA 5RLAA 4Q3VA 4Q3SA 4RLAA 1WVBA 4MYLA 4IU4A 1R1OA 2PLLA 1TBHA 1P8RA 3NIQA 3MFWA 3NIOA 1P8NA 1CEVA 4I06A 4HZEA 1WOIA 2EF4A 1T4TA 3THHA 4RHMA 1HQFA 3F80A 3CEVA 3M1RA 4HWWA 4GSZA 1HQGA 3DJ8A 4IU5A 1T5GA 1T4SA 1RLAA 1T4PA 1TBJA 4DZ4A 1GQ6A 4RHKA 3MJLA 4Q3UA 4MYFA 1HQHA 3TF3A 3TH7A 4Q40A 3PZLA 1ZPGA 1GQ7A 3E6KA 4MYKA 4ITYA 1WOHA 1T5FA 3GMZA 4Q3TA 3MFVA 4Q41A 1HQ5A 1T4RA 2EIVA 3LHLA 4G3HA 1P8OA 4IE3A 3LP7A 2PHAA 4FCIA 4RHIA 5HJ9A 3MMRA 4Q3PA 4IE2A 2RLAA 4Q42A 1TA1A 3SJTA 2ZAVA 3THEA 3E9BA 4IXUA 2EF5A 4Q3QA 3KV2A 4GWDA 5HJAA 4MXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IE1 A;  2PHO A;  1D3V A;  3GN0 A;  1P8S A;  3E8Z A;  2A0M A;  1TBL A;  4Q3R A;  5CEV A;  1WVA A;  1WOG A;  3NIP A;  4GWC A;  4HXQ A;  1XFK A;  2CEV A;  1PQ3 A;  3RLA A;  3E6V A;  1P8Q A;  4Q3R C;  3E8Q A;  4RHL A;  3SKK A;  4MYN A;  4IXV A;  4IU0 A;  1P8P A;  4RHQ A;  3SL1 A;  4CEV A;  4RHJ A;  1P8M A;  1HQX A;  4GSV A;  4FCK A;  1ZPE A;  3SL0 A;  3LP4 A;  4IU1 A;  2AEB A;  3THJ A;  4GSM A;  5RLA A;  4Q3V A;  4Q3S A;  4RLA A;  1WVB A;  4MYL A;  4IU4 A;  1R1O A;  2PLL A;  1TBH A;  1P8R A;  3NIQ A;  3MFW A;  3NIO A;  1P8N A;  1CEV A;  4I06 A;  4HZE A;  1WOI A;  2EF4 A;  1T4T A;  3THH A;  4RHM A;  1HQF A;  3F80 A;  3CEV A;  3M1R A;  4HWW A;  4GSZ A;  1HQG A;  3DJ8 A;  4IU5 A;  1T5G A;  1T4S A;  1RLA A;  1T4P A;  1TBJ A;  4DZ4 A;  1GQ6 A;  4RHK A;  3MJL A;  4Q3U A;  4MYF A;  1HQH A;  3TF3 A;  3TH7 A;  4Q40 A;  3PZL A;  1ZPG A;  1GQ7 A;  3E6K A;  4MYK A;  4ITY A;  1WOH A;  1T5F A;  3GMZ A;  4Q3T A;  3MFV A;  4Q41 A;  1HQ5 A;  1T4R A;  2EIV A;  3LHL A;  4G3H A;  1P8O A;  4IE3 A;  3LP7 A;  2PHA A;  4FCI A;  4RHI A;  5HJ9 A;  3MMR A;  4Q3P A;  4IE2 A;  2RLA A;  4Q42 A;  1TA1 A;  3SJT A;  2ZAV A;  3THE A;  3E9B A;  4IXU A;  2EF5 A;  4Q3Q A;  3KV2 A;  4GWD A;  5HJA A;  4MXR A; 
#chains in the Genus database with same CATH topology
 4IE1 A;  2PHO A;  1D3V A;  4QA5 A;  4BZ6 A;  3GN0 A;  1P8S A;  5JI5 A;  3C10 A;  1W22 A;  2A0M A;  3E8Z A;  1TBL A;  4Q3R A;  5CEV A;  1WVA A;  1WOG A;  3NIP A;  4GWC A;  4HXQ A;  1XFK A;  5EEF A;  2CEV A;  3MEN A;  2V5X A;  5EFB D;  1C3P A;  4BZ9 A;  1PQ3 A;  3RLA A;  3SFF A;  3E6V A;  5FCW A;  1P8Q A;  4Q3R C;  5FUE A;  3E8Q A;  4RHL A;  5IX0 A;  3SKK A;  3Q9B A;  4MYN A;  4QA7 A;  3C0Y A;  5EEI A;  1T64 A;  5EFH A;  3MAX A;  2VQM A;  4IXV A;  2VQV A;  4IU0 A;  1P8P A;  4RHQ A;  3SL1 A;  3EW8 A;  4CEV A;  4RHJ A;  1P8M A;  1HQX A;  4GSV A;  5G3W A;  4FCK A;  1ZPE A;  5DC8 A;  3SL0 A;  3LP4 A;  4IU1 A;  1C3S A;  5DC6 A;  5THS A;  3MZ7 A;  2AEB A;  3RQD A;  2VQQ A;  3THJ A;  4GSM A;  5RLA A;  4Q3V A;  4Q3S A;  5G0I A;  3SFH A;  4BKX B;  5THT A;  4RLA A;  1WVB A;  4MYL A;  1ZZ3 A;  4IU4 A;  1R1O A;  2PLL A;  1TBH A;  5EFK B;  4RN0 A;  3Q9E A;  5D1C A;  1P8R A;  3NIQ A;  3MFW A;  5G0H A;  3NIO A;  1P8N A;  1CEV A;  4I06 A;  3ZNR A;  4QA6 A;  4HZE A;  2VQO A;  1WOI A;  2EF4 A;  5EEK A;  4ZUR A;  1T4T A;  5G0Y A;  3THH A;  4RHM A;  1HQF A;  3F80 A;  3F06 A;  5EFJ D;  4CBT A;  4CBY A;  2VQW G;  3CEV A;  3M1R A;  3C0Z A;  4HWW A;  5EF8 A;  5G0G A;  5G13 A;  4GSZ A;  1HQG A;  3Q9F A;  3DJ8 A;  4ZUN A;  5DC5 A;  5G0X A;  5G11 A;  4IU5 A;  1T5G A;  1T4S A;  1RLA A;  1T4P A;  1TBJ A;  5G1C A;  4DZ4 A;  1GQ6 A;  2V5W A;  5ICN B;  3EZT A;  2VCG A;  4RHK A;  3MJL A;  4QA0 A;  5DC7 A;  5EEN A;  5G1A A;  4Q3U A;  4BZ8 A;  2VQJ A;  1T67 A;  3MZ6 A;  4MYF A;  5IWG A;  1HQH A;  3TF3 A;  3TH7 A;  5EEM A;  3MZ4 A;  4LY1 A;  4ZUO A;  4Q40 A;  3EWF A;  3PZL A;  1ZPG A;  3F07 A;  3MZ3 A;  1GQ7 A;  1VKG A;  3E6K A;  4LXZ A;  4MYK A;  4ZUP A;  4A69 A;  2GH6 A;  4ZUQ A;  3Q9C A;  3EZP A;  4ITY A;  1WOH A;  1T5F A;  1ZZ0 A;  3GMZ A;  4QA2 A;  5A2S A;  1ZZ1 A;  5G12 A;  4QA3 A;  4Q3T A;  5EF7 A;  5G1B A;  4ZUM A;  1C3R A;  3MFV A;  3F0R A;  1HQ5 A;  4Q41 A;  1T4R A;  2EIV A;  3LHL A;  5BWZ A;  3ZNS A;  4G3H A;  5G0J A;  4BZ5 A;  1P8O A;  4IE3 A;  5THV A;  5EFN A;  3LP7 A;  2PHA A;  4FCI A;  4RHI A;  4QA1 A;  3MMR A;  4Q3P A;  5HJ9 A;  4BZ7 A;  4IE2 A;  2RLA A;  4QA4 A;  4Q42 A;  1TA1 A;  3SJT A;  5LI3 A;  2ZAV A;  3THE A;  5EFG A;  5G10 A;  4RN1 A;  3E9B A;  4IXU A;  4RN2 A;  1T69 A;  5D1B A;  4CQF A;  2EF5 A;  4Q3Q A;  5THU A;  3KV2 A;  4GWD A;  5D1D A;  5G17 A;  5HJA A;  4MXR A; 
#chains in the Genus database with same CATH homology
 4IE1 A;  2PHO A;  1D3V A;  3GN0 A;  1P8S A;  3E8Z A;  2A0M A;  1TBL A;  4Q3R A;  5CEV A;  1WVA A;  1WOG A;  3NIP A;  4GWC A;  4HXQ A;  1XFK A;  2CEV A;  1PQ3 A;  3RLA A;  3E6V A;  1P8Q A;  4Q3R C;  3E8Q A;  4RHL A;  3SKK A;  4MYN A;  4IXV A;  4IU0 A;  1P8P A;  4RHQ A;  3SL1 A;  4CEV A;  4RHJ A;  1P8M A;  1HQX A;  4GSV A;  4FCK A;  1ZPE A;  3SL0 A;  3LP4 A;  4IU1 A;  2AEB A;  3THJ A;  4GSM A;  5RLA A;  4Q3V A;  4Q3S A;  4RLA A;  1WVB A;  4MYL A;  4IU4 A;  1R1O A;  2PLL A;  1TBH A;  1P8R A;  3NIQ A;  3MFW A;  3NIO A;  1P8N A;  1CEV A;  4I06 A;  4HZE A;  1WOI A;  2EF4 A;  1T4T A;  3THH A;  4RHM A;  1HQF A;  3F80 A;  3CEV A;  3M1R A;  4HWW A;  4GSZ A;  1HQG A;  3DJ8 A;  4IU5 A;  1T5G A;  1T4S A;  1RLA A;  1T4P A;  1TBJ A;  4DZ4 A;  1GQ6 A;  4RHK A;  3MJL A;  4Q3U A;  4MYF A;  1HQH A;  3TF3 A;  3TH7 A;  4Q40 A;  3PZL A;  1ZPG A;  1GQ7 A;  3E6K A;  4MYK A;  4ITY A;  1WOH A;  1T5F A;  3GMZ A;  4Q3T A;  3MFV A;  4Q41 A;  1HQ5 A;  1T4R A;  2EIV A;  3LHL A;  4G3H A;  1P8O A;  4IE3 A;  3LP7 A;  2PHA A;  4FCI A;  4RHI A;  5HJ9 A;  3MMR A;  4Q3P A;  4IE2 A;  2RLA A;  4Q42 A;  1TA1 A;  3SJT A;  2ZAV A;  3THE A;  3E9B A;  4IXU A;  2EF5 A;  4Q3Q A;  3KV2 A;  4GWD A;  5HJA A;  4MXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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