1GQ7A

Proclavaminate amidino hydrolase from streptomyces clavuligerus
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
Knots found
sequence length
301
structure length
301
Chain Sequence
SPRYAQIPTFMRLPHDPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDLINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROCLAVAMINATE AMIDINO HYDROLASE
publication title Oligomeric structure of proclavaminic acid amidino hydrolase: evolution of a hydrolytic enzyme in clavulanic acid biosynthesis.
pubmed doi rcsb
source organism Streptomyces clavuligerus
total genus 106
structure length 301
sequence length 301
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.22: Proclavaminate amidinohydrolase.
pdb deposition date 2001-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1gq7A00
2AEBA 3SJTA 1RLAA 4RHLA 4I06A 3NIPA 1T4SA 1TBLA 4GSVA 4GWCA 1T5GA 1HQXA 1P8SA 2RLAA 4IE3A 1PQ3A 1P8OA 4G3HA 1TBHA 4Q3UA 1D3VA 4GSZA 2EF4A 1HQHA 3KV2A 1WOHA 1WOGA 2A0MA 1WVBA 3NIQA 3THHA 4Q3RC 4IE2A 1XFKA 4FCKA 3LHLA 3E6KA 4RHJA 5HJAA 4FCIA 2PHOA 2EIVA 4Q42A 3CEVA 1P8NA 1TBJA 3MFVA 1ZPEA 3E9BA 4HXQA 3THJA 1TA1A 3LP7A 5RLAA 3DJ8A 1GQ7A 4MYKA 1HQ5A 3E6VA 1GQ6A 4IXUA 1ZPGA 1R1OA 4MYNA 1P8RA 4Q41A 3TF3A 1HQFA 4GSMA 3THEA 3GMZA 4ITYA 1WVAA 4IXVA 4MXRA 1WOIA 4IE1A 1T4TA 3GN0A 4Q3PA 3MMRA 2PLLA 4IU5A 4IU4A 4RHIA 3F80A 2ZAVA 4DZ4A 4GWDA 5CEVA 4Q3QA 3SL0A 2PHAA 1HQGA 3NIOA 1P8PA 1T4RA 4IU1A 3LP4A 4HZEA 2EF5A 3E8ZA 1P8QA 4CEVA 1CEVA 1P8MA 4MYFA 4RHMA 4RHQA 5HJ9A 1T5FA 4Q3TA 3SKKA 4MYLA 3M1RA 3E8QA 3TH7A 4Q40A 1T4PA 3MFWA 3SL1A 4RLAA 3RLAA 3PZLA 2CEVA 4Q3RA 4IU0A 4HWWA 4Q3VA 4RHKA 4Q3SA 3MJLA
chains in the Genus database with same CATH superfamily
2AEBA 2VQOA 3SJTA 5DC5A 1RLAA 4RHLA 4QA7A 4CQFA 4I06A 3NIPA 1T4SA 1TBLA 4GSVA 3Q9BA 4GWCA 3ZNRA 5D1BA 1T5GA 1HQXA 5G13A 5LI3A 4BZ8A 1P8SA 2RLAA 4BZ5A 4IE3A 1PQ3A 5EEMA 5EFKB 1T67A 5G1CA 5JI5A 1P8OA 5FCWA 4CBTA 4BKXB 4G3HA 5G0GA 3F07A 1TBHA 4Q3UA 5THTA 1D3VA 4RN2A 2V5WA 4GSZA 2EF4A 1HQHA 1W22A 3Q9FA 2VQVA 5G3WA 3KV2A 5DC6A 2VCGA 1WOHA 1WOGA 5G10A 2A0MA 3C0ZA 1WVBA 3NIQA 4ZUNA 3THHA 4Q3RC 4IE2A 1XFKA 4FCKA 5THUA 3EZPA 4LXZA 3LHLA 3E6KA 4RHJA 4QA3A 4ZUOA 5DC8A 5G17A 1ZZ1A 5HJAA 4FCIA 2PHOA 2EIVA 2VQJA 4Q42A 5EF8A 3CEVA 1P8NA 1TBJA 3C0YA 3MFVA 4QA1A 1C3SA 1ZPEA 3E9BA 4ZUMA 2VQQA 2V5XA 4HXQA 3F06A 3THJA 1TA1A 3LP7A 5RLAA 5G0YA 3DJ8A 1GQ7A 4MYKA 5G0IA 1HQ5A 3F0RA 3RQDA 3E6VA 1GQ6A 4IXUA 1ZPGA 1R1OA 5A2SA 3EW8A 4MYNA 1P8RA 4Q41A 3TF3A 1HQFA 4RN0A 4GSMA 3THEA 3GMZA 4ITYA 1WVAA 4IXVA 4MXRA 5G12A 5THVA 1WOIA 4IE1A 1T4TA 3GN0A 5BWZA 3EWFA 4Q3PA 3MMRA 5G1BA 2PLLA 3Q9EA 5G0XA 4IU5A 4IU4A 4RHIA 5G0HA 3F80A 2ZAVA 4DZ4A 1T69A 4ZURA 4GWDA 5G1AA 5EFGA 1C3RA 2GH6A 4Q3QA 2PHAA 3SL0A 4BZ6A 5CEVA 1HQGA 5IWGA 3MAXA 3NIOA 1P8PA 1T4RA 5THSA 2VQWG 3Q9CA 4IU1A 3LP4A 4HZEA 4CBYA 2EF5A 3E8ZA 1P8QA 5G11A 4CEVA 5EFHA 1VKGA 3MENA 1CEVA 1P8MA 2VQMA 4QA0A 5EENA 4MYFA 4BZ9A 5D1DA 4RHMA 5EF7A 4LY1A 1T64A 1ZZ3A 4A69A 4BZ7A 3EZTA 4RHQA 5HJ9A 1T5FA 1ZZ0A 5EFJD 4Q3TA 5G0JA 3SKKA 4QA6A 4ZUPA 4MYLA 5D1CA 3M1RA 4RN1A 3E8QA 5ICNB 3SFFA 4QA2A 5EFNA 3MZ7A 4Q40A 3TH7A 4QA5A 1T4PA 5EEIA 3MZ6A 3MFWA 3SL1A 1C3PA 5FUEA 3ZNSA 5EFBD 4RLAA 3MZ3A 5IX0A 5EEKA 3PZLA 3RLAA 2CEVA 3MZ4A 4Q3RA 5DC7A 4QA4A 4IU0A 4ZUQA 4HWWA 5EEFA 4Q3VA 4RHKA 4Q3SA 3C10A 3SFHA 3MJLA
chains in the Genus database with same CATH topology
2AEBA 3SJTA 1RLAA 4RHLA 4I06A 3NIPA 1T4SA 1TBLA 4GSVA 4GWCA 1T5GA 1HQXA 1P8SA 2RLAA 4IE3A 1PQ3A 1P8OA 4G3HA 1TBHA 4Q3UA 1D3VA 4GSZA 2EF4A 1HQHA 3KV2A 1WOHA 1WOGA 2A0MA 1WVBA 3NIQA 3THHA 4Q3RC 4IE2A 1XFKA 4FCKA 3LHLA 3E6KA 4RHJA 5HJAA 4FCIA 2PHOA 2EIVA 4Q42A 3CEVA 1P8NA 1TBJA 3MFVA 1ZPEA 3E9BA 4HXQA 3THJA 1TA1A 3LP7A 5RLAA 3DJ8A 1GQ7A 4MYKA 1HQ5A 3E6VA 1GQ6A 4IXUA 1ZPGA 1R1OA 4MYNA 1P8RA 4Q41A 3TF3A 1HQFA 4GSMA 3THEA 3GMZA 4ITYA 1WVAA 4IXVA 4MXRA 1WOIA 4IE1A 1T4TA 3GN0A 4Q3PA 3MMRA 2PLLA 4IU5A 4IU4A 4RHIA 3F80A 2ZAVA 4DZ4A 4GWDA 5CEVA 4Q3QA 3SL0A 2PHAA 1HQGA 3NIOA 1P8PA 1T4RA 4IU1A 3LP4A 4HZEA 2EF5A 3E8ZA 1P8QA 4CEVA 1CEVA 1P8MA 4MYFA 4RHMA 4RHQA 5HJ9A 1T5FA 4Q3TA 3SKKA 4MYLA 3M1RA 3E8QA 3TH7A 4Q40A 1T4PA 3MFWA 3SL1A 4RLAA 3RLAA 3PZLA 2CEVA 4Q3RA 4IU0A 4HWWA 4Q3VA 4RHKA 4Q3SA 3MJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AEB A;  3SJT A;  1RLA A;  4RHL A;  4I06 A;  3NIP A;  1T4S A;  1TBL A;  4GSV A;  4GWC A;  1T5G A;  1HQX A;  1P8S A;  2RLA A;  4IE3 A;  1PQ3 A;  1P8O A;  4G3H A;  1TBH A;  4Q3U A;  1D3V A;  4GSZ A;  2EF4 A;  1HQH A;  3KV2 A;  1WOH A;  1WOG A;  2A0M A;  1WVB A;  3NIQ A;  3THH A;  4Q3R C;  4IE2 A;  1XFK A;  4FCK A;  3LHL A;  3E6K A;  4RHJ A;  5HJA A;  4FCI A;  2PHO A;  2EIV A;  4Q42 A;  3CEV A;  1P8N A;  1TBJ A;  3MFV A;  1ZPE A;  3E9B A;  4HXQ A;  3THJ A;  1TA1 A;  3LP7 A;  5RLA A;  3DJ8 A;  1GQ7 A;  4MYK A;  1HQ5 A;  3E6V A;  1GQ6 A;  4IXU A;  1ZPG A;  1R1O A;  4MYN A;  1P8R A;  4Q41 A;  3TF3 A;  1HQF A;  4GSM A;  3THE A;  3GMZ A;  4ITY A;  1WVA A;  4IXV A;  4MXR A;  1WOI A;  4IE1 A;  1T4T A;  3GN0 A;  4Q3P A;  3MMR A;  2PLL A;  4IU5 A;  4IU4 A;  4RHI A;  3F80 A;  2ZAV A;  4DZ4 A;  4GWD A;  5CEV A;  4Q3Q A;  3SL0 A;  2PHA A;  1HQG A;  3NIO A;  1P8P A;  1T4R A;  4IU1 A;  3LP4 A;  4HZE A;  2EF5 A;  3E8Z A;  1P8Q A;  4CEV A;  1CEV A;  1P8M A;  4MYF A;  4RHM A;  4RHQ A;  5HJ9 A;  1T5F A;  4Q3T A;  3SKK A;  4MYL A;  3M1R A;  3E8Q A;  3TH7 A;  4Q40 A;  1T4P A;  3MFW A;  3SL1 A;  4RLA A;  3RLA A;  3PZL A;  2CEV A;  4Q3R A;  4IU0 A;  4HWW A;  4Q3V A;  4RHK A;  4Q3S A;  3MJL A; 
#chains in the Genus database with same CATH topology
 2AEB A;  2VQO A;  3SJT A;  5DC5 A;  1RLA A;  4RHL A;  4QA7 A;  4CQF A;  4I06 A;  3NIP A;  1T4S A;  1TBL A;  4GSV A;  3Q9B A;  4GWC A;  3ZNR A;  5D1B A;  1T5G A;  1HQX A;  5G13 A;  5LI3 A;  4BZ8 A;  1P8S A;  2RLA A;  4BZ5 A;  4IE3 A;  1PQ3 A;  5EEM A;  5EFK B;  1T67 A;  5G1C A;  5JI5 A;  1P8O A;  5FCW A;  4CBT A;  4BKX B;  4G3H A;  5G0G A;  3F07 A;  1TBH A;  4Q3U A;  5THT A;  1D3V A;  4RN2 A;  2V5W A;  4GSZ A;  2EF4 A;  1HQH A;  1W22 A;  3Q9F A;  2VQV A;  5G3W A;  3KV2 A;  5DC6 A;  2VCG A;  1WOH A;  1WOG A;  5G10 A;  2A0M A;  3C0Z A;  1WVB A;  3NIQ A;  4ZUN A;  3THH A;  4Q3R C;  4IE2 A;  1XFK A;  4FCK A;  5THU A;  3EZP A;  4LXZ A;  3LHL A;  3E6K A;  4RHJ A;  4QA3 A;  4ZUO A;  5DC8 A;  5G17 A;  1ZZ1 A;  5HJA A;  4FCI A;  2PHO A;  2EIV A;  2VQJ A;  4Q42 A;  5EF8 A;  3CEV A;  1P8N A;  1TBJ A;  3C0Y A;  3MFV A;  4QA1 A;  1C3S A;  1ZPE A;  3E9B A;  4ZUM A;  2VQQ A;  2V5X A;  4HXQ A;  3F06 A;  3THJ A;  1TA1 A;  3LP7 A;  5RLA A;  5G0Y A;  3DJ8 A;  1GQ7 A;  4MYK A;  5G0I A;  1HQ5 A;  3F0R A;  3RQD A;  3E6V A;  1GQ6 A;  4IXU A;  1ZPG A;  1R1O A;  5A2S A;  3EW8 A;  4MYN A;  1P8R A;  4Q41 A;  3TF3 A;  1HQF A;  4RN0 A;  4GSM A;  3THE A;  3GMZ A;  4ITY A;  1WVA A;  4IXV A;  4MXR A;  5G12 A;  5THV A;  1WOI A;  4IE1 A;  1T4T A;  3GN0 A;  5BWZ A;  3EWF A;  4Q3P A;  3MMR A;  5G1B A;  2PLL A;  3Q9E A;  5G0X A;  4IU5 A;  4IU4 A;  4RHI A;  5G0H A;  3F80 A;  2ZAV A;  4DZ4 A;  1T69 A;  4ZUR A;  4GWD A;  5G1A A;  5EFG A;  1C3R A;  2GH6 A;  4Q3Q A;  2PHA A;  3SL0 A;  4BZ6 A;  5CEV A;  1HQG A;  5IWG A;  3MAX A;  3NIO A;  1P8P A;  1T4R A;  5THS A;  2VQW G;  3Q9C A;  4IU1 A;  3LP4 A;  4HZE A;  4CBY A;  2EF5 A;  3E8Z A;  1P8Q A;  5G11 A;  4CEV A;  5EFH A;  1VKG A;  3MEN A;  1CEV A;  1P8M A;  2VQM A;  4QA0 A;  5EEN A;  4MYF A;  4BZ9 A;  5D1D A;  4RHM A;  5EF7 A;  4LY1 A;  1T64 A;  1ZZ3 A;  4A69 A;  4BZ7 A;  3EZT A;  4RHQ A;  5HJ9 A;  1T5F A;  1ZZ0 A;  5EFJ D;  4Q3T A;  5G0J A;  3SKK A;  4QA6 A;  4ZUP A;  4MYL A;  5D1C A;  3M1R A;  4RN1 A;  3E8Q A;  5ICN B;  3SFF A;  4QA2 A;  5EFN A;  3MZ7 A;  4Q40 A;  3TH7 A;  4QA5 A;  1T4P A;  5EEI A;  3MZ6 A;  3MFW A;  3SL1 A;  1C3P A;  5FUE A;  3ZNS A;  5EFB D;  4RLA A;  3MZ3 A;  5IX0 A;  5EEK A;  3PZL A;  3RLA A;  2CEV A;  3MZ4 A;  4Q3R A;  5DC7 A;  4QA4 A;  4IU0 A;  4ZUQ A;  4HWW A;  5EEF A;  4Q3V A;  4RHK A;  4Q3S A;  3C10 A;  3SFH A;  3MJL A; 
#chains in the Genus database with same CATH homology
 2AEB A;  3SJT A;  1RLA A;  4RHL A;  4I06 A;  3NIP A;  1T4S A;  1TBL A;  4GSV A;  4GWC A;  1T5G A;  1HQX A;  1P8S A;  2RLA A;  4IE3 A;  1PQ3 A;  1P8O A;  4G3H A;  1TBH A;  4Q3U A;  1D3V A;  4GSZ A;  2EF4 A;  1HQH A;  3KV2 A;  1WOH A;  1WOG A;  2A0M A;  1WVB A;  3NIQ A;  3THH A;  4Q3R C;  4IE2 A;  1XFK A;  4FCK A;  3LHL A;  3E6K A;  4RHJ A;  5HJA A;  4FCI A;  2PHO A;  2EIV A;  4Q42 A;  3CEV A;  1P8N A;  1TBJ A;  3MFV A;  1ZPE A;  3E9B A;  4HXQ A;  3THJ A;  1TA1 A;  3LP7 A;  5RLA A;  3DJ8 A;  1GQ7 A;  4MYK A;  1HQ5 A;  3E6V A;  1GQ6 A;  4IXU A;  1ZPG A;  1R1O A;  4MYN A;  1P8R A;  4Q41 A;  3TF3 A;  1HQF A;  4GSM A;  3THE A;  3GMZ A;  4ITY A;  1WVA A;  4IXV A;  4MXR A;  1WOI A;  4IE1 A;  1T4T A;  3GN0 A;  4Q3P A;  3MMR A;  2PLL A;  4IU5 A;  4IU4 A;  4RHI A;  3F80 A;  2ZAV A;  4DZ4 A;  4GWD A;  5CEV A;  4Q3Q A;  3SL0 A;  2PHA A;  1HQG A;  3NIO A;  1P8P A;  1T4R A;  4IU1 A;  3LP4 A;  4HZE A;  2EF5 A;  3E8Z A;  1P8Q A;  4CEV A;  1CEV A;  1P8M A;  4MYF A;  4RHM A;  4RHQ A;  5HJ9 A;  1T5F A;  4Q3T A;  3SKK A;  4MYL A;  3M1R A;  3E8Q A;  3TH7 A;  4Q40 A;  1T4P A;  3MFW A;  3SL1 A;  4RLA A;  3RLA A;  3PZL A;  2CEV A;  4Q3R A;  4IU0 A;  4HWW A;  4Q3V A;  4RHK A;  4Q3S A;  3MJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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