1GWEA

Atomic resolution structure of micrococcus lysodeikticus catalase
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSKYTKALVFQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADFHRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTVPGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVKRHEGDGIPGVEAGGEARI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title The Structures of Micrococcus Lysodeikticus Catalase, its Ferryl Intermediate (Compound II) and Nadph Complex.
pubmed doi rcsb
total genus 163
structure length 498
sequence length 498
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1gweA00
1P7ZA 1M7SA 1MQFA 1GWFA 3P9QA 1QWMA 1GGKA 1P81A 4ENQA 4B5KA 4ENRA 4BFLA 1U5UA 1SY7A 1GGHA 4AUMA 1IPHA 4AUEA 3DY5A 3P9RA 4B40A 3PQ4A 5BV2P 3P9PA 2CAHA 1QWSA 3TTWA 1GGJA 3P9SA 3TTXA 3EJ6A 1E93A 4QOLA 3TTVA 2IQFA 4AJ9A 3PQ3A 3PQ6A 4ENUA 1P7YA 1H7KA 3VU3A 2ISAA 2A9EA 4AUNA 1M85A 4QONA 1SI8A 4QOQA 3TTUA 4BIMA 1GGFA 4ENPA 2CAGA 2XQ1A 1NM0A 1P80A 1GGEA 4E37A 4B7AA 2XF2A 2J2MA 3PQ2A 2IUFA 1GWEA 4B31A 1A4EA 1GWHA 3PQ8A 4QOOA 3TTTA 4ENSA 3HB6A 3ZJ4A 1QWLA 1F4JA 4QOPA 4ENVA 3ZJ5A 1GG9A 3PQ7A 1CF9A 1QF7A 4CABA 1HBZA 4ENTA 4QOMA 1H6NA 3PQ5A 4AULA 4B2YA 4ENWA 4QORA
chains in the Genus database with same CATH superfamily
1P7ZA 3J7BA 4B7GA 1M7SA 1MQFA 1TGUA 1TH4A 1GWFA 3P9QA 1QWMA 1GGKA 1P81A 4ENQA 8CATA 1DGBA 4B5KA 3E4WA 4ENRA 4BFLA 1TH2A 1U5UA 1SY7A 1GGHA 4AUMA 1IPHA 4AUEA 3RE8A 3DY5A 3P9RA 4B40A 3PQ4A 1DGGA 3RGSA 5BV2P 3P9PA 2CAHA 1QWSA 3TTWA 1GGJA 4B7HA 3P9SA 1DGHB 3TTXA 3EJ6A 1E93A 4QOLA 3TTVA 1DGFA 2IQFA 4AJ9A 3PQ3A 3PQ6A 4ENUA 1P7YA 1H7KA 3VU3A 2ISAA 2A9EA 1M85A 4QONA 4AUNA 1SI8A 5GKNA 4QOQA 3TTUA 4BIMA 1GGFA 4ENPA 2CAGA 2XQ1A 1NM0A 1P80A 1GGEA 4E37A 4B7AA 2XF2A 2J2MA 3PQ2A 2IUFA 1GWEA 1TH3A 4B31A 1A4EA 1GWHA 3PQ8A 4QOOA 3TTTA 4ENSA 3HB6A 3ZJ4A 1QWLA 1F4JA 4QOPA 4ENVA 3NWLA 7CATA 3ZJ5A 1GG9A 3PQ7A 1CF9A 1QQWA 1QF7A 3E4YA 4CABA 1HBZA 4ENTA 4QOMA 1H6NA 3PQ5A 4B7FA 4AULA 4BLCA 1DGHA 3RGPA 4B2YA 4ENWA 4QORA
chains in the Genus database with same CATH topology
1P7ZA 1M7SA 1MQFA 1GWFA 3P9QA 1QWMA 1GGKA 1P81A 4ENQA 4B5KA 4ENRA 4BFLA 1U5UA 1SY7A 1GGHA 4AUMA 1IPHA 4AUEA 3DY5A 3P9RA 4B40A 3PQ4A 5BV2P 3P9PA 2CAHA 1QWSA 3TTWA 1GGJA 3P9SA 3TTXA 3EJ6A 1E93A 4QOLA 3TTVA 2IQFA 4AJ9A 3PQ3A 3PQ6A 4ENUA 1P7YA 1H7KA 3VU3A 2ISAA 2A9EA 4AUNA 1M85A 4QONA 1SI8A 4QOQA 3TTUA 4BIMA 1GGFA 4ENPA 2CAGA 2XQ1A 1NM0A 1P80A 1GGEA 4E37A 4B7AA 2XF2A 2J2MA 3PQ2A 2IUFA 1GWEA 4B31A 1A4EA 1GWHA 3PQ8A 4QOOA 3TTTA 4ENSA 3HB6A 3ZJ4A 1QWLA 1F4JA 4QOPA 4ENVA 3ZJ5A 1GG9A 3PQ7A 1CF9A 1QF7A 4CABA 1HBZA 4ENTA 4QOMA 1H6NA 3PQ5A 4AULA 4B2YA 4ENWA 4QORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P7Z A;  1M7S A;  1MQF A;  1GWF A;  3P9Q A;  1QWM A;  1GGK A;  1P81 A;  4ENQ A;  4B5K A;  4ENR A;  4BFL A;  1U5U A;  1SY7 A;  1GGH A;  4AUM A;  1IPH A;  4AUE A;  3DY5 A;  3P9R A;  4B40 A;  3PQ4 A;  5BV2 P;  3P9P A;  2CAH A;  1QWS A;  3TTW A;  1GGJ A;  3P9S A;  3TTX A;  3EJ6 A;  1E93 A;  4QOL A;  3TTV A;  2IQF A;  4AJ9 A;  3PQ3 A;  3PQ6 A;  4ENU A;  1P7Y A;  1H7K A;  3VU3 A;  2ISA A;  2A9E A;  4AUN A;  1M85 A;  4QON A;  1SI8 A;  4QOQ A;  3TTU A;  4BIM A;  1GGF A;  4ENP A;  2CAG A;  2XQ1 A;  1NM0 A;  1P80 A;  1GGE A;  4E37 A;  4B7A A;  2XF2 A;  2J2M A;  3PQ2 A;  2IUF A;  1GWE A;  4B31 A;  1A4E A;  1GWH A;  3PQ8 A;  4QOO A;  3TTT A;  4ENS A;  3HB6 A;  3ZJ4 A;  1QWL A;  1F4J A;  4QOP A;  4ENV A;  3ZJ5 A;  1GG9 A;  3PQ7 A;  1CF9 A;  1QF7 A;  4CAB A;  1HBZ A;  4ENT A;  4QOM A;  1H6N A;  3PQ5 A;  4AUL A;  4B2Y A;  4ENW A;  4QOR A; 
#chains in the Genus database with same CATH topology
 1P7Z A;  3J7B A;  4B7G A;  1M7S A;  1MQF A;  1TGU A;  1TH4 A;  1GWF A;  3P9Q A;  1QWM A;  1GGK A;  1P81 A;  4ENQ A;  8CAT A;  1DGB A;  4B5K A;  3E4W A;  4ENR A;  4BFL A;  1TH2 A;  1U5U A;  1SY7 A;  1GGH A;  4AUM A;  1IPH A;  4AUE A;  3RE8 A;  3DY5 A;  3P9R A;  4B40 A;  3PQ4 A;  1DGG A;  3RGS A;  5BV2 P;  3P9P A;  2CAH A;  1QWS A;  3TTW A;  1GGJ A;  4B7H A;  3P9S A;  1DGH B;  3TTX A;  3EJ6 A;  1E93 A;  4QOL A;  3TTV A;  1DGF A;  2IQF A;  4AJ9 A;  3PQ3 A;  3PQ6 A;  4ENU A;  1P7Y A;  1H7K A;  3VU3 A;  2ISA A;  2A9E A;  1M85 A;  4QON A;  4AUN A;  1SI8 A;  5GKN A;  4QOQ A;  3TTU A;  4BIM A;  1GGF A;  4ENP A;  2CAG A;  2XQ1 A;  1NM0 A;  1P80 A;  1GGE A;  4E37 A;  4B7A A;  2XF2 A;  2J2M A;  3PQ2 A;  2IUF A;  1GWE A;  1TH3 A;  4B31 A;  1A4E A;  1GWH A;  3PQ8 A;  4QOO A;  3TTT A;  4ENS A;  3HB6 A;  3ZJ4 A;  1QWL A;  1F4J A;  4QOP A;  4ENV A;  3NWL A;  7CAT A;  3ZJ5 A;  1GG9 A;  3PQ7 A;  1CF9 A;  1QQW A;  1QF7 A;  3E4Y A;  4CAB A;  1HBZ A;  4ENT A;  4QOM A;  1H6N A;  3PQ5 A;  4B7F A;  4AUL A;  4BLC A;  1DGH A;  3RGP A;  4B2Y A;  4ENW A;  4QOR A; 
#chains in the Genus database with same CATH homology
 1P7Z A;  1M7S A;  1MQF A;  1GWF A;  3P9Q A;  1QWM A;  1GGK A;  1P81 A;  4ENQ A;  4B5K A;  4ENR A;  4BFL A;  1U5U A;  1SY7 A;  1GGH A;  4AUM A;  1IPH A;  4AUE A;  3DY5 A;  3P9R A;  4B40 A;  3PQ4 A;  5BV2 P;  3P9P A;  2CAH A;  1QWS A;  3TTW A;  1GGJ A;  3P9S A;  3TTX A;  3EJ6 A;  1E93 A;  4QOL A;  3TTV A;  2IQF A;  4AJ9 A;  3PQ3 A;  3PQ6 A;  4ENU A;  1P7Y A;  1H7K A;  3VU3 A;  2ISA A;  2A9E A;  4AUN A;  1M85 A;  4QON A;  1SI8 A;  4QOQ A;  3TTU A;  4BIM A;  1GGF A;  4ENP A;  2CAG A;  2XQ1 A;  1NM0 A;  1P80 A;  1GGE A;  4E37 A;  4B7A A;  2XF2 A;  2J2M A;  3PQ2 A;  2IUF A;  1GWE A;  4B31 A;  1A4E A;  1GWH A;  3PQ8 A;  4QOO A;  3TTT A;  4ENS A;  3HB6 A;  3ZJ4 A;  1QWL A;  1F4J A;  4QOP A;  4ENV A;  3ZJ5 A;  1GG9 A;  3PQ7 A;  1CF9 A;  1QF7 A;  4CAB A;  1HBZ A;  4ENT A;  4QOM A;  1H6N A;  3PQ5 A;  4AUL A;  4B2Y A;  4ENW A;  4QOR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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