1H1VG

Gelsolin g4-g6/actin complex
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
331
structure length
327
Chain Sequence
MDDDGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Actin-binding
molecule keywords ACTIN
publication title The Calcium Activation of Gelsolin:Insights from the 3A Structure of the G4-G6/Actin Complex
pubmed doi rcsb
source organism Homo sapiens
total genus 87
structure length 327
sequence length 331
ec nomenclature
pdb deposition date 2002-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1h1vG01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1h1vG03
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1h1vG02
2FGHA 1NM1G 1WM4A 3EG9B 1M4JA 3EGDA 3CJCG 2HD7A 1T2LA 3L50A 3TU5B 2W0IA 5KYWB 4LIZA 4PKHB 2NUPA 1C0GS 1PCXA 5DD2A 1RGIG 3A5NS 2MOTA 3Q2BA 1SVRA 2I2QA 5KYXB 4CBXG 3EGXB 3FFNA 1M2OA 1CFYA 3EGDB 2NUTA 3A5OS 1SVYA 1HQZ1 1JHWA 4PKGG 1CNUA 4Z94G 1ESVS 5KYXA 2FH3A 2NUPB 1VFQA 1M2VB 3DAWB 1NPHA 5A1MA 5IVUA 5HVKD 1NMDG 2NUTB 5KYYA 2FH2A 1M2VA 1T3XA 2FH4A 1C0FS 2MP4A 1T44G 1UDMA 2D8BA 2QTVA 1H1VG 1AK6A 1VKKA 1YVNG 2XF1A 1YAGG 5L6WC 1SVQA 1QPVA 1DEJS 3A5MS 1F7SA 2LJ8A 1PD1A 5FAFA 5KYYB 3CJBG 4S10C 5KYUA 3CI5G 1KCQA 1P8XA 1V6FA 2FF6G 3FG6A 3FFKA 1EQYS 2LXXA 4JD2H 2VILA 3EH1A 2FH1A 5HVKB 1Q8XA 2VACA 1COFA 4KEDA 2KVKA 2XFAA 2L72A 1WFSA 3A5LS 5KYUB 5KYNA 4KEFA 1T3YA 1AK7A 2FF3A 1X67A 4KEEA 3EFOA 1TVJA 1WNJA 1MDUA 3EG9A 1P8ZG 5FAEA 2VIKA 4BEX1 1TMWA 1D0NA 1J72A 1Q8GA 4PKIG 2MV2A 4CBUG 1PD0A 4CBWG 5KYWA 1D4XG 1NLVG 3FG7A 3CIPG 2LLFA 1AHQA 3EH2A 3EFOB 3EGXA
chains in the Genus database with same CATH superfamily
2FGHA 1NM1G 1WM4A 3EG9B 1M4JA 3EGDA 3CJCG 2HD7A 1T2LA 3L50A 3TU5B 2W0IA 5KYWB 4LIZA 4PKHB 2NUPA 1C0GS 1PCXA 5DD2A 1RGIG 3A5NS 2MOTA 3Q2BA 1SVRA 2I2QA 5KYXB 4CBXG 3EGXB 3FFNA 1M2OA 1CFYA 3EGDB 2NUTA 3A5OS 1SVYA 1HQZ1 1JHWA 4PKGG 1CNUA 4Z94G 1ESVS 5KYXA 2FH3A 2NUPB 1VFQA 1M2VB 3DAWB 1NPHA 5A1MA 5IVUA 5HVKD 1NMDG 2NUTB 5KYYA 2FH2A 1M2VA 1T3XA 2FH4A 1C0FS 2MP4A 1T44G 1UDMA 2D8BA 2QTVA 1H1VG 1AK6A 1VKKA 1YVNG 2XF1A 1YAGG 5L6WC 1SVQA 1QPVA 1DEJS 3A5MS 1F7SA 2LJ8A 1PD1A 5FAFA 5KYYB 3CJBG 4S10C 5KYUA 3CI5G 1KCQA 1P8XA 1V6FA 2FF6G 3DA7A 3FG6A 3FFKA 1EQYS 2LXXA 4JD2H 2VILA 3EH1A 2FH1A 5HVKB 1Q8XA 2VACA 1COFA 4KEDA 2KVKA 2XFAA 2L72A 1WFSA 3A5LS 5KYUB 5KYNA 4KEFA 1T3YA 1AK7A 2FF3A 1X67A 4KEEA 3EFOA 1TVJA 1WNJA 1MDUA 3EG9A 1P8ZG 5FAEA 2VIKA 4BEX1 1TMWA 1D0NA 1J72A 1Q8GA 4PKIG 2MV2A 4CBUG 1PD0A 4CBWG 5KYWA 1D4XG 1NLVG 3FG7A 3CIPG 2LLFA 1AHQA 3EH2A 3EFOB 3EGXA
chains in the Genus database with same CATH topology
2FGHA 1NM1G 1WM4A 3EG9B 1M4JA 3EGDA 3CJCG 2HD7A 1T2LA 3L50A 3TU5B 2W0IA 5KYWB 4LIZA 4PKHB 2NUPA 1C0GS 1PCXA 5DD2A 1RGIG 3A5NS 2MOTA 3Q2BA 1SVRA 2I2QA 5KYXB 4CBXG 3EGXB 3FFNA 1M2OA 1CFYA 3EGDB 2NUTA 3A5OS 1SVYA 1HQZ1 1JHWA 4PKGG 1CNUA 4Z94G 1ESVS 5KYXA 2FH3A 2NUPB 1VFQA 1M2VB 3DAWB 1NPHA 5A1MA 5IVUA 5HVKD 1NMDG 2NUTB 5KYYA 2FH2A 1M2VA 1T3XA 2FH4A 1C0FS 2MP4A 1T44G 1UDMA 2D8BA 2QTVA 1H1VG 1AK6A 1VKKA 1YVNG 2XF1A 1YAGG 5L6WC 1SVQA 1QPVA 1DEJS 3A5MS 1F7SA 2LJ8A 1PD1A 5FAFA 5KYYB 3CJBG 4S10C 5KYUA 3CI5G 1KCQA 1P8XA 1V6FA 2FF6G 3DA7A 3FG6A 3FFKA 1EQYS 2LXXA 4JD2H 2VILA 3EH1A 2FH1A 5HVKB 1Q8XA 2VACA 1COFA 4KEDA 2KVKA 2XFAA 2L72A 1WFSA 3A5LS 5KYUB 5KYNA 4KEFA 1T3YA 1AK7A 2FF3A 1X67A 4KEEA 3EFOA 1TVJA 1WNJA 1MDUA 3EG9A 1P8ZG 5FAEA 2VIKA 4BEX1 1TMWA 1D0NA 1J72A 1Q8GA 4PKIG 2MV2A 4CBUG 1PD0A 4CBWG 5KYWA 1D4XG 1NLVG 3FG7A 3CIPG 2LLFA 1AHQA 3EH2A 3EFOB 3EGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FGH A;  1NM1 G;  1WM4 A;  3EG9 B;  1M4J A;  3EGD A;  3CJC G;  2HD7 A;  1T2L A;  3L50 A;  3TU5 B;  2W0I A;  5KYW B;  4LIZ A;  4PKH B;  2NUP A;  1C0G S;  1PCX A;  5DD2 A;  1RGI G;  3A5N S;  2MOT A;  3Q2B A;  1SVR A;  2I2Q A;  5KYX B;  4CBX G;  3EGX B;  3FFN A;  1M2O A;  1CFY A;  3EGD B;  2NUT A;  3A5O S;  1SVY A;  1HQZ 1;  1JHW A;  4PKG G;  1CNU A;  4Z94 G;  1ESV S;  5KYX A;  2FH3 A;  2NUP B;  1VFQ A;  1M2V B;  3DAW B;  1NPH A;  5A1M A;  5IVU A;  5HVK D;  1NMD G;  2NUT B;  5KYY A;  2FH2 A;  1M2V A;  1T3X A;  2FH4 A;  1C0F S;  2MP4 A;  1T44 G;  1UDM A;  2D8B A;  2QTV A;  1H1V G;  1AK6 A;  1VKK A;  1YVN G;  2XF1 A;  1YAG G;  5L6W C;  1SVQ A;  1QPV A;  1DEJ S;  3A5M S;  1F7S A;  2LJ8 A;  1PD1 A;  5FAF A;  5KYY B;  3CJB G;  4S10 C;  5KYU A;  3CI5 G;  1KCQ A;  1P8X A;  1V6F A;  2FF6 G;  3FG6 A;  3FFK A;  1EQY S;  2LXX A;  4JD2 H;  2VIL A;  3EH1 A;  2FH1 A;  5HVK B;  1Q8X A;  2VAC A;  1COF A;  4KED A;  2KVK A;  2XFA A;  2L72 A;  1WFS A;  3A5L S;  5KYU B;  5KYN A;  4KEF A;  1T3Y A;  1AK7 A;  2FF3 A;  1X67 A;  4KEE A;  3EFO A;  1TVJ A;  1WNJ A;  1MDU A;  3EG9 A;  1P8Z G;  5FAE A;  2VIK A;  4BEX 1;  1TMW A;  1D0N A;  1J72 A;  1Q8G A;  4PKI G;  2MV2 A;  4CBU G;  1PD0 A;  4CBW G;  5KYW A;  1D4X G;  1NLV G;  3FG7 A;  3CIP G;  2LLF A;  1AHQ A;  3EH2 A;  3EFO B;  3EGX A; 
#chains in the Genus database with same CATH topology
 2FGH A;  1NM1 G;  1WM4 A;  3EG9 B;  1M4J A;  3EGD A;  3CJC G;  2HD7 A;  1T2L A;  3L50 A;  3TU5 B;  2W0I A;  5KYW B;  4LIZ A;  4PKH B;  2NUP A;  1C0G S;  1PCX A;  5DD2 A;  1RGI G;  3A5N S;  2MOT A;  3Q2B A;  1SVR A;  2I2Q A;  5KYX B;  4CBX G;  3EGX B;  3FFN A;  1M2O A;  1CFY A;  3EGD B;  2NUT A;  3A5O S;  1SVY A;  1HQZ 1;  1JHW A;  4PKG G;  1CNU A;  4Z94 G;  1ESV S;  5KYX A;  2FH3 A;  2NUP B;  1VFQ A;  1M2V B;  3DAW B;  1NPH A;  5A1M A;  5IVU A;  5HVK D;  1NMD G;  2NUT B;  5KYY A;  2FH2 A;  1M2V A;  1T3X A;  2FH4 A;  1C0F S;  2MP4 A;  1T44 G;  1UDM A;  2D8B A;  2QTV A;  1H1V G;  1AK6 A;  1VKK A;  1YVN G;  2XF1 A;  1YAG G;  5L6W C;  1SVQ A;  1QPV A;  1DEJ S;  3A5M S;  1F7S A;  2LJ8 A;  1PD1 A;  5FAF A;  5KYY B;  3CJB G;  4S10 C;  5KYU A;  3CI5 G;  1KCQ A;  1P8X A;  1V6F A;  2FF6 G;  3DA7 A;  3FG6 A;  3FFK A;  1EQY S;  2LXX A;  4JD2 H;  2VIL A;  3EH1 A;  2FH1 A;  5HVK B;  1Q8X A;  2VAC A;  1COF A;  4KED A;  2KVK A;  2XFA A;  2L72 A;  1WFS A;  3A5L S;  5KYU B;  5KYN A;  4KEF A;  1T3Y A;  1AK7 A;  2FF3 A;  1X67 A;  4KEE A;  3EFO A;  1TVJ A;  1WNJ A;  1MDU A;  3EG9 A;  1P8Z G;  5FAE A;  2VIK A;  4BEX 1;  1TMW A;  1D0N A;  1J72 A;  1Q8G A;  4PKI G;  2MV2 A;  4CBU G;  1PD0 A;  4CBW G;  5KYW A;  1D4X G;  1NLV G;  3FG7 A;  3CIP G;  2LLF A;  1AHQ A;  3EH2 A;  3EFO B;  3EGX A; 
#chains in the Genus database with same CATH homology
 2FGH A;  1NM1 G;  1WM4 A;  3EG9 B;  1M4J A;  3EGD A;  3CJC G;  2HD7 A;  1T2L A;  3L50 A;  3TU5 B;  2W0I A;  5KYW B;  4LIZ A;  4PKH B;  2NUP A;  1C0G S;  1PCX A;  5DD2 A;  1RGI G;  3A5N S;  2MOT A;  3Q2B A;  1SVR A;  2I2Q A;  5KYX B;  4CBX G;  3EGX B;  3FFN A;  1M2O A;  1CFY A;  3EGD B;  2NUT A;  3A5O S;  1SVY A;  1HQZ 1;  1JHW A;  4PKG G;  1CNU A;  4Z94 G;  1ESV S;  5KYX A;  2FH3 A;  2NUP B;  1VFQ A;  1M2V B;  3DAW B;  1NPH A;  5A1M A;  5IVU A;  5HVK D;  1NMD G;  2NUT B;  5KYY A;  2FH2 A;  1M2V A;  1T3X A;  2FH4 A;  1C0F S;  2MP4 A;  1T44 G;  1UDM A;  2D8B A;  2QTV A;  1H1V G;  1AK6 A;  1VKK A;  1YVN G;  2XF1 A;  1YAG G;  5L6W C;  1SVQ A;  1QPV A;  1DEJ S;  3A5M S;  1F7S A;  2LJ8 A;  1PD1 A;  5FAF A;  5KYY B;  3CJB G;  4S10 C;  5KYU A;  3CI5 G;  1KCQ A;  1P8X A;  1V6F A;  2FF6 G;  3DA7 A;  3FG6 A;  3FFK A;  1EQY S;  2LXX A;  4JD2 H;  2VIL A;  3EH1 A;  2FH1 A;  5HVK B;  1Q8X A;  2VAC A;  1COF A;  4KED A;  2KVK A;  2XFA A;  2L72 A;  1WFS A;  3A5L S;  5KYU B;  5KYN A;  4KEF A;  1T3Y A;  1AK7 A;  2FF3 A;  1X67 A;  4KEE A;  3EFO A;  1TVJ A;  1WNJ A;  1MDU A;  3EG9 A;  1P8Z G;  5FAE A;  2VIK A;  4BEX 1;  1TMW A;  1D0N A;  1J72 A;  1Q8G A;  4PKI G;  2MV2 A;  4CBU G;  1PD0 A;  4CBW G;  5KYW A;  1D4X G;  1NLV G;  3FG7 A;  3CIP G;  2LLF A;  1AHQ A;  3EH2 A;  3EFO B;  3EGX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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