1I4TA

Crystal structure analysis of rac1-gmppnp in complex with arfaptin
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
195
structure length
180
Chain Sequence
SRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords ARFAPTIN 2
publication title The structural basis of Arfaptin-mediated cross-talk between Rac and Arf signalling pathways.
pubmed doi rcsb
source organism Homo sapiens
total genus 83
structure length 180
sequence length 195
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-02-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 1i4tA00
2X3VA 4NQIA 2RAIA 3Q84A 4NSWA 2D1LA 2Z0VA 4DYLA 2X3WA 2D4CA 2X3XA 3HAJA 4WPCA 1X03A 4BNEA 3ABHA 2FICA 2EFKA 3QE6A 3M3WA 1I4DA 2C08A 3CAZA 2V0OA 2Z0OA 1I49A 1ZWWA 3Q0KA 4H8SA 5C5BA 1Y2OA 2ELBA 1I4LA 3QWEA 2YKTA 3ACOA 2RAJA 3HAHA 2Q12A 2Z0NA 4WPEA 4I1QA 3DYTA 2EFLA 3LLLA 1X04A 2RAKA 2Q13A 3QNIA 4ATMA 1WDZA 3OK8A 1I4TA 3SOGA 3I2WA 3PLTA 1URUA 3G9GA 3SYVA 4AKVA 4AVMA 4FZSA 4DCNC 3HAIA 5C5BB
chains in the Genus database with same CATH superfamily
2NCZA 2ZXQA 2PY6A 2Z0VA 4AZCB 3L3OM 1QWUA 4D8JA 2RAJA 2Q12A 3O3NB 3RV1A 4JWEA 3EJTA 3CKDA 2OW6A 4UDYX 3PLTA 2F7PA 4E81A 3DDGA 4JNFA 3CAZA 1OA1A 4G6QA 4JLCA 3ACOA 3DX3A 3DX0A 2QXLA 2OBMA 3EJRA 3D51A 3BLBA 3DX2A 1SUFA 3LVTA 2YL5A 2QKWA 1OA0A 2WINM 4WPEA 3UITA 3BUPA 4EZVA 1O7DC 4EZNA 2LXYA 3EJUA 2RAIA 2QFFA 4WPCA 3I01A 1U00A 5FLEX 1E1DA 4EZZA 4JWCA 5FIGA 2F7QA 3D4ZA 3BVUA 4R5IA 2WYHA 1X04A 2RAKA 3QNIA 2FYVA 4EZXA 1YWMA 3D2FA 2OW7A 4IM3A 4DYLA 2F7OA 1SU8A 3I39X 3GI7A 3ZEDA 2KHOA 2EFLA 4AZ6A 3T46A 3VEAA 3OK8A 2O0I1 1TQWA 3LMFA 1E2UA 2F1AA 2X3WA 3QA8A 3T47A 3QE6A 1HWWA 1I49A 1ZWWA 3DPQA 5C5BA 1Y2OA 2ELBA 4PO2A 3RPMA 4EZUA 2WYIA 3SYVA 3O3OB 5C5BB 1ZYLA 3Q84A 1PS3A 2ALWA 2X3XA 4BNEA 3T4AG 2YIAA 3ERCC 4H8SA 3BUIA 4FZPA 1DKXA 4AZ7A 3L3PA 1I4TA 3I2WA 2F18A 2N3KA 2D4CA 1X03A 3KAWA 1GNTA 3I04A 2V0OA 2GA9D 3BUDA 4EZWA 2YI9A 4JWDA 3G9GA 4IWPA 2EX3B 2MI7A 1O7DB 3DPPA 2Z0OA 4R5JA 3Q0KA 4EZYA 4FZOA 3RV0A 2F7RA 2Z0NA 4IW0A 4HR1A 2ND0A 3DYTA 3LLLA 4EZPA 2GAFD 4ATMA 3ER8C 3CZNA 3SOGA 4AZGA 4AVMA 3O3MB 3BVXA 3B51X 1SU7A 4HR1B 4HY9A 4IM2A 1MJGA 4F01A 3D50A 4KIKA 3D52A 1GN9A 4JL9A 1R34A 4UDXX 4FZSA 4DCNC 4F00A 3CZSA 2YLLA 3QNJA 3BUBA 4KIKB 4B9QA 4IWQA 5TKYA 2YL8A 2LM0A 3BVWA 2YL6A 3KDRA 4FM3A 3ER9B 2JNSA 2X5CA 4IWOA 1SU6A 3EJQA 4HYBA 2OZNB 1TQSA 2X3VA 3D4YA 1QWNA 4M0MA 3D2EA 2EFKA 4E3CA 3M3WA 1I4DA 2RT6A 3DX4A 3F7WA 1I4LA 3T48A 2PMRA 2Q13A 2YL9A 1TQUA 2YIBA 4AZ5A 3OHXM 4EZTA 1UPXA 4NQIA 3DDFA 4JN4A 2JNKA 3ABHA 1LQ7A 3BUQA 4R5GA 3C7NA 3CVRA 3QWEA 1DKYA 1DKZA 2OBLA 4JWIA 1HXKA 2F1BA 4I1QA 1HTYA 1TQTA 4AKVA 1W9MA 4AZIA 3FD9A 2OO2A 2D1LA 3HAJA 1TQVA 2YI8A 1GNLA 2Z8YA 3HAHA 3T49A 3KAVA 1OAOA 4NPHA 3BVTA 1JQKA 3DX1A 5KBPA 4EZSA 4EZRA 3CV5A 3VEBA 2FICA 4EZOA 3VKHA 2C08A 4H6HA 3BVVA 4AZBA 2YIVX 1R33A 2GF4A 1R5EA 4H6IA 1E9VA 4JNEA 2YLAA 4R5LA 4EZQA 3HAIA 3A98A 5E84A 4NSWA 2EWFA 3B52X 2ND1A 4AZHA 3DPOA 4IM0A 2YKTA 4R5KA 3OWGA 1QX1A 4AZCA 3EJPA 1WDZA 3EJSA 3B53X 1URUA
chains in the Genus database with same CATH topology
2X3VA 4NQIA 2RAIA 3Q84A 4NSWA 2D1LA 2Z0VA 4DYLA 2X3WA 2D4CA 2X3XA 3HAJA 4WPCA 1X03A 4BNEA 3ABHA 2FICA 2EFKA 3QE6A 3M3WA 1I4DA 2C08A 3CAZA 2V0OA 2Z0OA 1I49A 1ZWWA 3Q0KA 4H8SA 5C5BA 1Y2OA 2ELBA 1I4LA 3QWEA 2YKTA 3ACOA 2RAJA 3HAHA 2Q12A 2Z0NA 4WPEA 4I1QA 3DYTA 2EFLA 3LLLA 1X04A 2RAKA 2Q13A 3QNIA 4ATMA 1WDZA 3OK8A 1I4TA 3SOGA 3I2WA 3PLTA 1URUA 3G9GA 3SYVA 4AKVA 4AVMA 4FZSA 4DCNC 3HAIA 5C5BB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X3V A;  4NQI A;  2RAI A;  3Q84 A;  4NSW A;  2D1L A;  2Z0V A;  4DYL A;  2X3W A;  2D4C A;  2X3X A;  3HAJ A;  4WPC A;  1X03 A;  4BNE A;  3ABH A;  2FIC A;  2EFK A;  3QE6 A;  3M3W A;  1I4D A;  2C08 A;  3CAZ A;  2V0O A;  2Z0O A;  1I49 A;  1ZWW A;  3Q0K A;  4H8S A;  5C5B A;  1Y2O A;  2ELB A;  1I4L A;  3QWE A;  2YKT A;  3ACO A;  2RAJ A;  3HAH A;  2Q12 A;  2Z0N A;  4WPE A;  4I1Q A;  3DYT A;  2EFL A;  3LLL A;  1X04 A;  2RAK A;  2Q13 A;  3QNI A;  4ATM A;  1WDZ A;  3OK8 A;  1I4T A;  3SOG A;  3I2W A;  3PLT A;  1URU A;  3G9G A;  3SYV A;  4AKV A;  4AVM A;  4FZS A;  4DCN C;  3HAI A;  5C5B B; 
#chains in the Genus database with same CATH topology
 2NCZ A;  2ZXQ A;  2PY6 A;  2Z0V A;  4AZC B;  3L3O M;  1QWU A;  4D8J A;  2RAJ A;  2Q12 A;  3O3N B;  3RV1 A;  4JWE A;  3EJT A;  3CKD A;  2OW6 A;  4UDY X;  3PLT A;  2F7P A;  4E81 A;  3DDG A;  4JNF A;  3CAZ A;  1OA1 A;  4G6Q A;  4JLC A;  3ACO A;  3DX3 A;  3DX0 A;  2QXL A;  2OBM A;  3EJR A;  3D51 A;  3BLB A;  3DX2 A;  1SUF A;  3LVT A;  2YL5 A;  2QKW A;  1OA0 A;  2WIN M;  4WPE A;  3UIT A;  3BUP A;  4EZV A;  1O7D C;  4EZN A;  2LXY A;  3EJU A;  2RAI A;  2QFF A;  4WPC A;  3I01 A;  1U00 A;  5FLE X;  1E1D A;  4EZZ A;  4JWC A;  5FIG A;  2F7Q A;  3D4Z A;  3BVU A;  4R5I A;  2WYH A;  1X04 A;  2RAK A;  3QNI A;  2FYV A;  4EZX A;  1YWM A;  3D2F A;  2OW7 A;  4IM3 A;  4DYL A;  2F7O A;  1SU8 A;  3I39 X;  3GI7 A;  3ZED A;  2KHO A;  2EFL A;  4AZ6 A;  3T46 A;  3VEA A;  3OK8 A;  2O0I 1;  1TQW A;  3LMF A;  1E2U A;  2F1A A;  2X3W A;  3QA8 A;  3T47 A;  3QE6 A;  1HWW A;  1I49 A;  1ZWW A;  3DPQ A;  5C5B A;  1Y2O A;  2ELB A;  4PO2 A;  3RPM A;  4EZU A;  2WYI A;  3SYV A;  3O3O B;  5C5B B;  1ZYL A;  3Q84 A;  1PS3 A;  2ALW A;  2X3X A;  4BNE A;  3T4A G;  2YIA A;  3ERC C;  4H8S A;  3BUI A;  4FZP A;  1DKX A;  4AZ7 A;  3L3P A;  1I4T A;  3I2W A;  2F18 A;  2N3K A;  2D4C A;  1X03 A;  3KAW A;  1GNT A;  3I04 A;  2V0O A;  2GA9 D;  3BUD A;  4EZW A;  2YI9 A;  4JWD A;  3G9G A;  4IWP A;  2EX3 B;  2MI7 A;  1O7D B;  3DPP A;  2Z0O A;  4R5J A;  3Q0K A;  4EZY A;  4FZO A;  3RV0 A;  2F7R A;  2Z0N A;  4IW0 A;  4HR1 A;  2ND0 A;  3DYT A;  3LLL A;  4EZP A;  2GAF D;  4ATM A;  3ER8 C;  3CZN A;  3SOG A;  4AZG A;  4AVM A;  3O3M B;  3BVX A;  3B51 X;  1SU7 A;  4HR1 B;  4HY9 A;  4IM2 A;  1MJG A;  4F01 A;  3D50 A;  4KIK A;  3D52 A;  1GN9 A;  4JL9 A;  1R34 A;  4UDX X;  4FZS A;  4DCN C;  4F00 A;  3CZS A;  2YLL A;  3QNJ A;  3BUB A;  4KIK B;  4B9Q A;  4IWQ A;  5TKY A;  2YL8 A;  2LM0 A;  3BVW A;  2YL6 A;  3KDR A;  4FM3 A;  3ER9 B;  2JNS A;  2X5C A;  4IWO A;  1SU6 A;  3EJQ A;  4HYB A;  2OZN B;  1TQS A;  2X3V A;  3D4Y A;  1QWN A;  4M0M A;  3D2E A;  2EFK A;  4E3C A;  3M3W A;  1I4D A;  2RT6 A;  3DX4 A;  3F7W A;  1I4L A;  3T48 A;  2PMR A;  2Q13 A;  2YL9 A;  1TQU A;  2YIB A;  4AZ5 A;  3OHX M;  4EZT A;  1UPX A;  4NQI A;  3DDF A;  4JN4 A;  2JNK A;  3ABH A;  1LQ7 A;  3BUQ A;  4R5G A;  3C7N A;  3CVR A;  3QWE A;  1DKY A;  1DKZ A;  2OBL A;  4JWI A;  1HXK A;  2F1B A;  4I1Q A;  1HTY A;  1TQT A;  4AKV A;  1W9M A;  4AZI A;  3FD9 A;  2OO2 A;  2D1L A;  3HAJ A;  1TQV A;  2YI8 A;  1GNL A;  2Z8Y A;  3HAH A;  3T49 A;  3KAV A;  1OAO A;  4NPH A;  3BVT A;  1JQK A;  3DX1 A;  5KBP A;  4EZS A;  4EZR A;  3CV5 A;  3VEB A;  2FIC A;  4EZO A;  3VKH A;  2C08 A;  4H6H A;  3BVV A;  4AZB A;  2YIV X;  1R33 A;  2GF4 A;  1R5E A;  4H6I A;  1E9V A;  4JNE A;  2YLA A;  4R5L A;  4EZQ A;  3HAI A;  3A98 A;  5E84 A;  4NSW A;  2EWF A;  3B52 X;  2ND1 A;  4AZH A;  3DPO A;  4IM0 A;  2YKT A;  4R5K A;  3OWG A;  1QX1 A;  4AZC A;  3EJP A;  1WDZ A;  3EJS A;  3B53 X;  1URU A; 
#chains in the Genus database with same CATH homology
 2X3V A;  4NQI A;  2RAI A;  3Q84 A;  4NSW A;  2D1L A;  2Z0V A;  4DYL A;  2X3W A;  2D4C A;  2X3X A;  3HAJ A;  4WPC A;  1X03 A;  4BNE A;  3ABH A;  2FIC A;  2EFK A;  3QE6 A;  3M3W A;  1I4D A;  2C08 A;  3CAZ A;  2V0O A;  2Z0O A;  1I49 A;  1ZWW A;  3Q0K A;  4H8S A;  5C5B A;  1Y2O A;  2ELB A;  1I4L A;  3QWE A;  2YKT A;  3ACO A;  2RAJ A;  3HAH A;  2Q12 A;  2Z0N A;  4WPE A;  4I1Q A;  3DYT A;  2EFL A;  3LLL A;  1X04 A;  2RAK A;  2Q13 A;  3QNI A;  4ATM A;  1WDZ A;  3OK8 A;  1I4T A;  3SOG A;  3I2W A;  3PLT A;  1URU A;  3G9G A;  3SYV A;  4AKV A;  4AVM A;  4FZS A;  4DCN C;  3HAI A;  5C5B B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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