1IR1S

Crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) complexed with co2, mg2+ and 2-carboxyarabinitol-1,5-bisphosphate
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
KVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAGY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords Large subunit of Rubisco
publication title Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
pubmed doi rcsb
total genus 27
structure length 122
sequence length 122
chains with identical sequence T, U, V
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2001-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1ir1S00
4F0HB 2V6AI 1IR21 1UW9C 4F0MB 2V67I 8RUCI 2V68I 3RUBS 1RBLI 2V69I 1IR1S 1UPPI 3AXMS 3AXKS 2V63I 1RLCS 1UZHC 1RCXC 4RUBS 1GK8I 1UZDC 1WDDS 4MKVS 1AUSS 1RLDS 1AA1C 1IWAB 2VDII 3ZXWB 2VDHI 1RBOC 1RXOC 1UPMC 1RSCI 1BWVS 1SVDM 4HHHS 2YBVB 1UWAC 1BXNI 1EJ7S 4F0KB 1RCOC
chains in the Genus database with same CATH superfamily
4F0HB 2V6AI 1IR21 1UW9C 4F0MB 2V67I 8RUCI 2V68I 3RUBS 4QVIA 1RBLI 2V69I 4DFCB 3TG8A 3UMYA 1MZPA 1IR1S 1UPPI 3AXMS 3AXKS 2V63I 4F9TA 1RLCS 1UZHC 1RCXC 4QGBA 2HW8A 4RUBS 1GK8I 1UZDC 1WDDS 4MKVS 3QOYA 4QG3A 1AUSS 1RLDS 1AA1C 1IWAB 2VDII 4REOA 5DM60 1CJSA 3ZXWB 4LQ4A 3U56A 2VDHI 1ZHOA 2FHZA 1RBOC 1RXOC 1AD2A 1UPMC 3U4MA 1RSCI 3FPNA 1DWUA 1I2AA 1BWVS 1SVDM 3ZQJA 1U63A 4HHHS 2YBVB 1UWAC 1BXNI 2DFXI 5DM70 1EJ7S 4F0KB 1RCOC
chains in the Genus database with same CATH topology
4F0HB 2V6AI 1IR21 1UW9C 4F0MB 2V67I 8RUCI 2V68I 3RUBS 1RBLI 2V69I 1IR1S 1UPPI 3AXMS 3AXKS 2V63I 1RLCS 1UZHC 1RCXC 4RUBS 1GK8I 1UZDC 1WDDS 4MKVS 1AUSS 1RLDS 1AA1C 1IWAB 2VDII 3ZXWB 2VDHI 1RBOC 1RXOC 1UPMC 1RSCI 1BWVS 1SVDM 4HHHS 2YBVB 1UWAC 1BXNI 1EJ7S 4F0KB 1RCOC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0H B;  2V6A I;  1IR2 1;  1UW9 C;  4F0M B;  2V67 I;  8RUC I;  2V68 I;  3RUB S;  1RBL I;  2V69 I;  1IR1 S;  1UPP I;  3AXM S;  3AXK S;  2V63 I;  1RLC S;  1UZH C;  1RCX C;  4RUB S;  1GK8 I;  1UZD C;  1WDD S;  4MKV S;  1AUS S;  1RLD S;  1AA1 C;  1IWA B;  2VDI I;  3ZXW B;  2VDH I;  1RBO C;  1RXO C;  1UPM C;  1RSC I;  1BWV S;  1SVD M;  4HHH S;  2YBV B;  1UWA C;  1BXN I;  1EJ7 S;  4F0K B;  1RCO C; 
#chains in the Genus database with same CATH topology
 4F0H B;  2V6A I;  1IR2 1;  1UW9 C;  4F0M B;  2V67 I;  8RUC I;  2V68 I;  3RUB S;  4QVI A;  1RBL I;  2V69 I;  4DFC B;  3TG8 A;  3UMY A;  1MZP A;  1IR1 S;  1UPP I;  3AXM S;  3AXK S;  2V63 I;  4F9T A;  1RLC S;  1UZH C;  1RCX C;  4QGB A;  2HW8 A;  4RUB S;  1GK8 I;  1UZD C;  1WDD S;  4MKV S;  3QOY A;  4QG3 A;  1AUS S;  1RLD S;  1AA1 C;  1IWA B;  2VDI I;  4REO A;  5DM6 0;  1CJS A;  3ZXW B;  4LQ4 A;  3U56 A;  2VDH I;  1ZHO A;  2FHZ A;  1RBO C;  1RXO C;  1AD2 A;  1UPM C;  3U4M A;  1RSC I;  3FPN A;  1DWU A;  1I2A A;  1BWV S;  1SVD M;  3ZQJ A;  1U63 A;  4HHH S;  2YBV B;  1UWA C;  1BXN I;  2DFX I;  5DM7 0;  1EJ7 S;  4F0K B;  1RCO C; 
#chains in the Genus database with same CATH homology
 4F0H B;  2V6A I;  1IR2 1;  1UW9 C;  4F0M B;  2V67 I;  8RUC I;  2V68 I;  3RUB S;  1RBL I;  2V69 I;  1IR1 S;  1UPP I;  3AXM S;  3AXK S;  2V63 I;  1RLC S;  1UZH C;  1RCX C;  4RUB S;  1GK8 I;  1UZD C;  1WDD S;  4MKV S;  1AUS S;  1RLD S;  1AA1 C;  1IWA B;  2VDI I;  3ZXW B;  2VDH I;  1RBO C;  1RXO C;  1UPM C;  1RSC I;  1BWV S;  1SVD M;  4HHH S;  2YBV B;  1UWA C;  1BXN I;  1EJ7 S;  4F0K B;  1RCO C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...