1IR21

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase (rubisco) from green alga, chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate (2-cabp)
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSARDWQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Large subunit of Rubisco
publication title Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
pubmed doi rcsb
total genus 31
structure length 139
sequence length 139
chains with identical sequence 2, 3, 4, 5, 6, 7, 8, I, J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2001-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1ir2100
1RXOC 2V6AI 1SVDM 1EJ7S 4HHHS 3RUBS 3ZXWB 1AA1C 1RBOC 1WDDS 4F0HB 1BWVS 1RLDS 4F0MB 8RUCI 1UZHC 1UPPI 1UPMC 1RCXC 1AUSS 1RCOC 1IWAB 3AXMS 1UW9C 1RBLI 4RUBS 2V63I 2VDII 2YBVB 1RSCI 4MKVS 2V69I 2V68I 4F0KB 1UZDC 1GK8I 2V67I 1BXNI 1IR1S 2VDHI 1IR21 1RLCS 3AXKS 1UWAC
chains in the Genus database with same CATH superfamily
1RXOC 2V6AI 2HW8A 1SVDM 1EJ7S 4HHHS 3RUBS 3ZQJA 1CJSA 3ZXWB 1AA1C 5DM60 3UMYA 1RBOC 1U63A 3QOYA 4QGBA 1WDDS 4F0HB 4DFCB 1ZHOA 1BWVS 3U4MA 1RLDS 2DFXI 4F0MB 8RUCI 1MZPA 1UZHC 1UPPI 1UPMC 3U56A 1RCXC 3FPNA 1AUSS 1RCOC 1IWAB 3AXMS 1UW9C 1RBLI 4RUBS 2V63I 1I2AA 2VDII 2YBVB 1RSCI 4MKVS 1DWUA 4F9TA 2V69I 4REOA 2V68I 4F0KB 3TG8A 4QVIA 1UZDC 1GK8I 4QG3A 2V67I 1BXNI 1IR1S 2FHZA 2VDHI 1IR21 1RLCS 3AXKS 4LQ4A 1UWAC 5DM70 1AD2A
chains in the Genus database with same CATH topology
1RXOC 2V6AI 1SVDM 1EJ7S 4HHHS 3RUBS 3ZXWB 1AA1C 1RBOC 1WDDS 4F0HB 1BWVS 1RLDS 4F0MB 8RUCI 1UZHC 1UPPI 1UPMC 1RCXC 1AUSS 1RCOC 1IWAB 3AXMS 1UW9C 1RBLI 4RUBS 2V63I 2VDII 2YBVB 1RSCI 4MKVS 2V69I 2V68I 4F0KB 1UZDC 1GK8I 2V67I 1BXNI 1IR1S 2VDHI 1IR21 1RLCS 3AXKS 1UWAC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RXO C;  2V6A I;  1SVD M;  1EJ7 S;  4HHH S;  3RUB S;  3ZXW B;  1AA1 C;  1RBO C;  1WDD S;  4F0H B;  1BWV S;  1RLD S;  4F0M B;  8RUC I;  1UZH C;  1UPP I;  1UPM C;  1RCX C;  1AUS S;  1RCO C;  1IWA B;  3AXM S;  1UW9 C;  1RBL I;  4RUB S;  2V63 I;  2VDI I;  2YBV B;  1RSC I;  4MKV S;  2V69 I;  2V68 I;  4F0K B;  1UZD C;  1GK8 I;  2V67 I;  1BXN I;  1IR1 S;  2VDH I;  1IR2 1;  1RLC S;  3AXK S;  1UWA C; 
#chains in the Genus database with same CATH topology
 1RXO C;  2V6A I;  2HW8 A;  1SVD M;  1EJ7 S;  4HHH S;  3RUB S;  3ZQJ A;  1CJS A;  3ZXW B;  1AA1 C;  5DM6 0;  3UMY A;  1RBO C;  1U63 A;  3QOY A;  4QGB A;  1WDD S;  4F0H B;  4DFC B;  1ZHO A;  1BWV S;  3U4M A;  1RLD S;  2DFX I;  4F0M B;  8RUC I;  1MZP A;  1UZH C;  1UPP I;  1UPM C;  3U56 A;  1RCX C;  3FPN A;  1AUS S;  1RCO C;  1IWA B;  3AXM S;  1UW9 C;  1RBL I;  4RUB S;  2V63 I;  1I2A A;  2VDI I;  2YBV B;  1RSC I;  4MKV S;  1DWU A;  4F9T A;  2V69 I;  4REO A;  2V68 I;  4F0K B;  3TG8 A;  4QVI A;  1UZD C;  1GK8 I;  4QG3 A;  2V67 I;  1BXN I;  1IR1 S;  2FHZ A;  2VDH I;  1IR2 1;  1RLC S;  3AXK S;  4LQ4 A;  1UWA C;  5DM7 0;  1AD2 A; 
#chains in the Genus database with same CATH homology
 1RXO C;  2V6A I;  1SVD M;  1EJ7 S;  4HHH S;  3RUB S;  3ZXW B;  1AA1 C;  1RBO C;  1WDD S;  4F0H B;  1BWV S;  1RLD S;  4F0M B;  8RUC I;  1UZH C;  1UPP I;  1UPM C;  1RCX C;  1AUS S;  1RCO C;  1IWA B;  3AXM S;  1UW9 C;  1RBL I;  4RUB S;  2V63 I;  2VDI I;  2YBV B;  1RSC I;  4MKV S;  2V69 I;  2V68 I;  4F0K B;  1UZD C;  1GK8 I;  2V67 I;  1BXN I;  1IR1 S;  2VDH I;  1IR2 1;  1RLC S;  3AXK S;  1UWA C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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