1IRNA

Rubredoxin (zn-substituted) at 1.2 angstroms resolution
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords RUBREDOXIN
publication title Zinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: a high-precision model of a ZnS4 coordination unit in a protein.
pubmed doi rcsb
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 1995-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1irnA00
1RDVA 3RZ6A 3RZTA 4YWMA 1B2JA 1B2OA 4POGA 1SMUA 3KYYA 1R0IA 4POFA 1BFYA 1T9OA 1ZRPA 1C09A 2KKDA 1SMMA 1RYTA 1LKPA 2DSXA 3KYVA 1NNQA 1QCVA 1SMWA 4YWLA 1RDGA 3A44A 1CAAA 1S2ZA 4AR3A 2VL6A 1JYBA 4RXNA 1R0FA 4AR4A 1VCXA 8RXNA 1DVBA 1LKOA 7RXNA 2KN9A 1BQ9A 1S24A 4AR6A 1YK4A 1YUXA 3RYGA 1YUZA 2MS3A 1B13A 2PVXA 2PYAA 1R0JA 4TPUA 3QVDA 1BQ8A 2LCQA 3SS2A 1IU5A 1IU6A 2QL0A 2RDVA 1IROA 1S30A 2HR5A 3PWFA 1FHMA 3KYWA 1YV1A 1T9QA 5AI3A 1BRFA 1RWDA 2V3BB 1H7VA 1T9PA 3KYUA 1IRNA 4K9FA 6RXNA 1DX8A 1BE7A 2K2DA 1R0GA 1FHHA 1E8JA 5IY0A 4AR5A 3MPSA 4ME3A 5RXNA 2PVEA 1R0HA 5AI2A 1LKMA 1QYBA 1RB9A 3KYXA 1YK5A 1LTLA 2M4YA 1CADA 1B71A 2GMGA 3PZAA
chains in the Genus database with same CATH superfamily
1B2JA 1B2OA 1Z92B 4POGA 2H12A 5IYDL 4A3CL 3KYYA 5C3EL 2A69D 1BFYA 1NXEA 1C09A 3H9CA 2B63L 2NVQL 1SMWA 4QIWP 4YWLA 1VZGA 2A68D 5FLML 2APOB 2VL6A 8RXNA 4A3IL 2RFKB 1DVBA 3P2AA 2R92L 1TWHL 3GTML 2AUSB 1VZIA 1YK4A 1YUZA 4X6AL 4A3KL 3LNLA 1OWCA 3I4ML 4XGHA 3GTLL 1BQ8A 3QVDA 3QQCE 3LWVB 1IU6A 2QL0A 5GADc 3FKIL 2HR5A 2VUML 3PWFA 4XXBB 4G6BA 3S14L 4JAEA 2O5JD 3S15L 3HOWL 3HOVL 1TWCL 3P8BA 1T9PA 3KYUA 4K9FA 6RXNA 2ERSA 3CQZL 4JADA 3M3YL 3HKZP 3H0GL 4LHNA 5EIOC 4AR5A 3MPSA 2PVEA 4BBSL 3S1NL 5AI2A 2M6PA 1RB9A 1YK5A 4WFN1 4A3DL 2M4YA 3HAXC 4BY1L 1ODHA 1RDVA 1OWBA 4YWMA 4C3HL 5C4JL 4A3LL 1IW7D 1R0IA 3RZDL 4POFA 3PO3L 3HOZL 4AHZA 3GTJL 2YU9L 2JI1A 1NNQA 1PFUA 5MFZA 2AYJA 2A6ED 1CAAA 1S2ZA 4AR3A 4RXNA 1R0FA 2CR8A 2WB1P 7RXNA 3M4OL 1WCML 2KN9A 3LWOB 4C2M1 2PPTA 2XJQA 3ZG6A 3I4NL 3J7Z1 1P7PA 5DM71 2JA5L 2JI2A 1R0JA 3PKIA 4AYBP 3S1QL 2R93L 4Y7NL 2J9UB 2LCQA 1IROA 1FHMA 5AI3A 3S1ML 3S16L 5MLC3 2V0FA 3PIP1 5JVH1 4BBRL 5M3FL 2JA8L 3PL5A 1Y1WL 4AI0A 3WWNB 3LWPB 1R0GA 2XJTA 3GTQL 3PO2L 1PZXA 2JA6L 3PKJA 5MGNA 1K83L 4AHXA 3GTKL 3GTGL 2PSMC 2M4VA 4JAFA 1RYQA 1CADA 3PZAA 3S1RL 4AHWA 4LHLA 3RZ6A 3RZTA 4A3EL 4BXXL 4AHYA 4AI1A 3S2HL 2E2JL 3LWRB 4AI2A 4U671 1T9OA 2KKDA 1SMMA 1LKPA 5MF6A 5M3ML 3KYVA 3S17L 1QCVA 1PFYA 5K2ME 5IP9L 3MQKB 5DM61 2XJPA 1R9TL 1JYBA 1TWAL 5M5YL 1I6HL 3B08B 1LKOA 1SFOL 1PFVA 2ERJA 1BQ9A 3HOUL 4JAGA 1YUXA 3K35A 3WWLA 3HJWB 2MS3A 2PYAA 2XJRA 3FDJA 5MFPA 4A3FL 3SS2A 4A3BL 2CKCA 1IU5A 2EY4E 2XJUA 1I50L 5M5XL 2Y0SP 4UY81 2NVXL 3H9BA 3JR7A 1RWDA 2ZIXA 3S2DL 2A6HD 3LWQB 2C6BA 1H7VA 1IRNA 2R7ZL 1TWGL 4AI3A 4A93L 2WAQP 1BE7A 4B8CD 3J7Y1 5GAHc 5IP7L 3HJYB 2E2HL 2V0EA 1E8JA 5IY0A 5AN9H 5JVG1 4ME3A 5GAGc 1R0HA 5FJ8L 2JA7L 3GTOL 3KYXA 3PIO1 3K7AL 2XJVA 4GS7D 1F4LA 1WJVA 3HOYL 4TVMA 2XJSA 4ZN3B 1SMUA 2NYDA 5C44L 2B5ID 3H99A 5H1Sc 2CKAA 2AQCA 5EINC 1ZRPA 3H3VM 1RYTA 2DSXA 4ZN1B 1RDGA 2Z3QB 3A44A 2NVYL 4Y52L 3VPBE 4AR4A 1VCXA 1PFWA 4A3GL 3NFPI 4C3JL 1S24A 4AR6A 3RYGA 2L0ZA 1B13A 2PVXA 4TPUA 2JI3A 2Z3RB 5GAEc 2RDVA 1S30A 3KYWA 1YV1A 3HOXL 1T9QA 1BRFA 4A3JL 3GTPL 2E2IL 2BE5D 3MSUA 2V3BB 5C4XL 3H97A 1VZHA 4BY7L 1QQTA 1DX8A 5M5WL 4A3ML 3RZOL 4V196 2K2DA 1Y1VL 1FHHA 3LPEB 3IU3I 2NVTL 4E6YA 1TWFL 5IYBL 5RXNA 2PMZP 4C3IL 2HVYC 1I3QL 3B0AB 1LKMA 1QYBA 1NXGA 5IYCL 1LTLA 1B71A 2M6OA 2GMGA 2C6AA
chains in the Genus database with same CATH topology
1ODHA 4LHLA 1RDVA 1OWBA 3RZ6A 3RZTA 4AHYA 4TVMA 4YWMA 2XJSA 4AI1A 1B2JA 1B2OA 1Z92B 4POGA 4ZN3B 1SMUA 1IW7D 2NYDA 2H12A 2B5ID 3KYYA 1R0IA 5H1Sc 2CKAA 2A69D 4AI2A 5EINC 4POFA 4U671 1BFYA 1T9OA 1NXEA 1ZRPA 1C09A 2KKDA 1SMMA 1RYTA 1LKPA 5MF6A 2DSXA 4AHZA 3KYVA 2JI1A 1NNQA 1QCVA 4ZN1B 1SMWA 5K2ME 5MFZA 4YWLA 1RDGA 2Z3QB 2AYJA 3A44A 1VZGA 1CAAA 1S2ZA 2A68D 2A6ED 4AR3A 2VL6A 2XJPA 3VPBE 5DM61 1JYBA 4RXNA 1R0FA 4AR4A 2CR8A 1VCXA 8RXNA 3B08B 1DVBA 1LKOA 3P2AA 2ERJA 7RXNA 3NFPI 2KN9A 1BQ9A 4JAGA 1S24A 4AR6A 1VZIA 1YK4A 1YUXA 2PPTA 3RYGA 1YUZA 3K35A 2L0ZA 2XJQA 3WWLA 3ZG6A 3LNLA 3J7Z1 5DM71 2MS3A 1B13A 1OWCA 2JI2A 2PVXA 2PYAA 4XGHA 1R0JA 3PKIA 4TPUA 2XJRA 1BQ8A 3QVDA 3QQCE 2JI3A 5MFPA 2J9UB 2Z3RB 2LCQA 2CKCA 3SS2A 1IU5A 5GAEc 1IU6A 2XJUA 2QL0A 2RDVA 5GADc 1IROA 1S30A 2HR5A 3PWFA 1FHMA 3KYWA 1YV1A 4UY81 4XXBB 1T9QA 4G6BA 5AI3A 1BRFA 1RWDA 2ZIXA 2BE5D 2A6HD 3MSUA 2V3BB 4JAEA 5MLC3 2O5JD 2C6BA 1H7VA 3P8BA 1T9PA 2V0FA 3KYUA 1IRNA 3PIP1 1VZHA 5JVH1 4K9FA 6RXNA 1DX8A 4AI3A 2ERSA 4V196 4AI0A 1BE7A 3WWNB 2K2DA 4JADA 1R0GA 4B8CD 2XJTA 3J7Y1 5GAHc 1FHHA 3LPEB 3IU3I 2V0EA 3PKJA 4LHNA 5EIOC 5MGNA 1E8JA 4E6YA 5IY0A 4AR5A 5AN9H 4AHXA 5JVG1 3MPSA 4ME3A 5RXNA 5GAGc 2PVEA 2PSMC 1R0HA 3B0AB 5AI2A 1LKMA 2M6PA 1QYBA 1NXGA 2M4VA 1RB9A 3KYXA 1YK5A 3PIO1 4WFN1 1LTLA 2M4YA 2XJVA 4JAFA 4GS7D 1RYQA 1CADA 1B71A 1WJVA 2M6OA 2GMGA 2C6AA 3PZAA 4AHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RDV A;  3RZ6 A;  3RZT A;  4YWM A;  1B2J A;  1B2O A;  4POG A;  1SMU A;  3KYY A;  1R0I A;  4POF A;  1BFY A;  1T9O A;  1ZRP A;  1C09 A;  2KKD A;  1SMM A;  1RYT A;  1LKP A;  2DSX A;  3KYV A;  1NNQ A;  1QCV A;  1SMW A;  4YWL A;  1RDG A;  3A44 A;  1CAA A;  1S2Z A;  4AR3 A;  2VL6 A;  1JYB A;  4RXN A;  1R0F A;  4AR4 A;  1VCX A;  8RXN A;  1DVB A;  1LKO A;  7RXN A;  2KN9 A;  1BQ9 A;  1S24 A;  4AR6 A;  1YK4 A;  1YUX A;  3RYG A;  1YUZ A;  2MS3 A;  1B13 A;  2PVX A;  2PYA A;  1R0J A;  4TPU A;  3QVD A;  1BQ8 A;  2LCQ A;  3SS2 A;  1IU5 A;  1IU6 A;  2QL0 A;  2RDV A;  1IRO A;  1S30 A;  2HR5 A;  3PWF A;  1FHM A;  3KYW A;  1YV1 A;  1T9Q A;  5AI3 A;  1BRF A;  1RWD A;  2V3B B;  1H7V A;  1T9P A;  3KYU A;  1IRN A;  4K9F A;  6RXN A;  1DX8 A;  1BE7 A;  2K2D A;  1R0G A;  1FHH A;  1E8J A;  5IY0 A;  4AR5 A;  3MPS A;  4ME3 A;  5RXN A;  2PVE A;  1R0H A;  5AI2 A;  1LKM A;  1QYB A;  1RB9 A;  3KYX A;  1YK5 A;  1LTL A;  2M4Y A;  1CAD A;  1B71 A;  2GMG A;  3PZA A; 
#chains in the Genus database with same CATH topology
 1B2J A;  1B2O A;  1Z92 B;  4POG A;  2H12 A;  5IYD L;  4A3C L;  3KYY A;  5C3E L;  2A69 D;  1BFY A;  1NXE A;  1C09 A;  3H9C A;  2B63 L;  2NVQ L;  1SMW A;  4QIW P;  4YWL A;  1VZG A;  2A68 D;  5FLM L;  2APO B;  2VL6 A;  8RXN A;  4A3I L;  2RFK B;  1DVB A;  3P2A A;  2R92 L;  1TWH L;  3GTM L;  2AUS B;  1VZI A;  1YK4 A;  1YUZ A;  4X6A L;  4A3K L;  3LNL A;  1OWC A;  3I4M L;  4XGH A;  3GTL L;  1BQ8 A;  3QVD A;  3QQC E;  3LWV B;  1IU6 A;  2QL0 A;  5GAD c;  3FKI L;  2HR5 A;  2VUM L;  3PWF A;  4XXB B;  4G6B A;  3S14 L;  4JAE A;  2O5J D;  3S15 L;  3HOW L;  3HOV L;  1TWC L;  3P8B A;  1T9P A;  3KYU A;  4K9F A;  6RXN A;  2ERS A;  3CQZ L;  4JAD A;  3M3Y L;  3HKZ P;  3H0G L;  4LHN A;  5EIO C;  4AR5 A;  3MPS A;  2PVE A;  4BBS L;  3S1N L;  5AI2 A;  2M6P A;  1RB9 A;  1YK5 A;  4WFN 1;  4A3D L;  2M4Y A;  3HAX C;  4BY1 L;  1ODH A;  1RDV A;  1OWB A;  4YWM A;  4C3H L;  5C4J L;  4A3L L;  1IW7 D;  1R0I A;  3RZD L;  4POF A;  3PO3 L;  3HOZ L;  4AHZ A;  3GTJ L;  2YU9 L;  2JI1 A;  1NNQ A;  1PFU A;  5MFZ A;  2AYJ A;  2A6E D;  1CAA A;  1S2Z A;  4AR3 A;  4RXN A;  1R0F A;  2CR8 A;  2WB1 P;  7RXN A;  3M4O L;  1WCM L;  2KN9 A;  3LWO B;  4C2M 1;  2PPT A;  2XJQ A;  3ZG6 A;  3I4N L;  3J7Z 1;  1P7P A;  5DM7 1;  2JA5 L;  2JI2 A;  1R0J A;  3PKI A;  4AYB P;  3S1Q L;  2R93 L;  4Y7N L;  2J9U B;  2LCQ A;  1IRO A;  1FHM A;  5AI3 A;  3S1M L;  3S16 L;  5MLC 3;  2V0F A;  3PIP 1;  5JVH 1;  4BBR L;  5M3F L;  2JA8 L;  3PL5 A;  1Y1W L;  4AI0 A;  3WWN B;  3LWP B;  1R0G A;  2XJT A;  3GTQ L;  3PO2 L;  1PZX A;  2JA6 L;  3PKJ A;  5MGN A;  1K83 L;  4AHX A;  3GTK L;  3GTG L;  2PSM C;  2M4V A;  4JAF A;  1RYQ A;  1CAD A;  3PZA A;  3S1R L;  4AHW A;  4LHL A;  3RZ6 A;  3RZT A;  4A3E L;  4BXX L;  4AHY A;  4AI1 A;  3S2H L;  2E2J L;  3LWR B;  4AI2 A;  4U67 1;  1T9O A;  2KKD A;  1SMM A;  1LKP A;  5MF6 A;  5M3M L;  3KYV A;  3S17 L;  1QCV A;  1PFY A;  5K2M E;  5IP9 L;  3MQK B;  5DM6 1;  2XJP A;  1R9T L;  1JYB A;  1TWA L;  5M5Y L;  1I6H L;  3B08 B;  1LKO A;  1SFO L;  1PFV A;  2ERJ A;  1BQ9 A;  3HOU L;  4JAG A;  1YUX A;  3K35 A;  3WWL A;  3HJW B;  2MS3 A;  2PYA A;  2XJR A;  3FDJ A;  5MFP A;  4A3F L;  3SS2 A;  4A3B L;  2CKC A;  1IU5 A;  2EY4 E;  2XJU A;  1I50 L;  5M5X L;  2Y0S P;  4UY8 1;  2NVX L;  3H9B A;  3JR7 A;  1RWD A;  2ZIX A;  3S2D L;  2A6H D;  3LWQ B;  2C6B A;  1H7V A;  1IRN A;  2R7Z L;  1TWG L;  4AI3 A;  4A93 L;  2WAQ P;  1BE7 A;  4B8C D;  3J7Y 1;  5GAH c;  5IP7 L;  3HJY B;  2E2H L;  2V0E A;  1E8J A;  5IY0 A;  5AN9 H;  5JVG 1;  4ME3 A;  5GAG c;  1R0H A;  5FJ8 L;  2JA7 L;  3GTO L;  3KYX A;  3PIO 1;  3K7A L;  2XJV A;  4GS7 D;  1F4L A;  1WJV A;  3HOY L;  4TVM A;  2XJS A;  4ZN3 B;  1SMU A;  2NYD A;  5C44 L;  2B5I D;  3H99 A;  5H1S c;  2CKA A;  2AQC A;  5EIN C;  1ZRP A;  3H3V M;  1RYT A;  2DSX A;  4ZN1 B;  1RDG A;  2Z3Q B;  3A44 A;  2NVY L;  4Y52 L;  3VPB E;  4AR4 A;  1VCX A;  1PFW A;  4A3G L;  3NFP I;  4C3J L;  1S24 A;  4AR6 A;  3RYG A;  2L0Z A;  1B13 A;  2PVX A;  4TPU A;  2JI3 A;  2Z3R B;  5GAE c;  2RDV A;  1S30 A;  3KYW A;  1YV1 A;  3HOX L;  1T9Q A;  1BRF A;  4A3J L;  3GTP L;  2E2I L;  2BE5 D;  3MSU A;  2V3B B;  5C4X L;  3H97 A;  1VZH A;  4BY7 L;  1QQT A;  1DX8 A;  5M5W L;  4A3M L;  3RZO L;  4V19 6;  2K2D A;  1Y1V L;  1FHH A;  3LPE B;  3IU3 I;  2NVT L;  4E6Y A;  1TWF L;  5IYB L;  5RXN A;  2PMZ P;  4C3I L;  2HVY C;  1I3Q L;  3B0A B;  1LKM A;  1QYB A;  1NXG A;  5IYC L;  1LTL A;  1B71 A;  2M6O A;  2GMG A;  2C6A A; 
#chains in the Genus database with same CATH homology
 1ODH A;  4LHL A;  1RDV A;  1OWB A;  3RZ6 A;  3RZT A;  4AHY A;  4TVM A;  4YWM A;  2XJS A;  4AI1 A;  1B2J A;  1B2O A;  1Z92 B;  4POG A;  4ZN3 B;  1SMU A;  1IW7 D;  2NYD A;  2H12 A;  2B5I D;  3KYY A;  1R0I A;  5H1S c;  2CKA A;  2A69 D;  4AI2 A;  5EIN C;  4POF A;  4U67 1;  1BFY A;  1T9O A;  1NXE A;  1ZRP A;  1C09 A;  2KKD A;  1SMM A;  1RYT A;  1LKP A;  5MF6 A;  2DSX A;  4AHZ A;  3KYV A;  2JI1 A;  1NNQ A;  1QCV A;  4ZN1 B;  1SMW A;  5K2M E;  5MFZ A;  4YWL A;  1RDG A;  2Z3Q B;  2AYJ A;  3A44 A;  1VZG A;  1CAA A;  1S2Z A;  2A68 D;  2A6E D;  4AR3 A;  2VL6 A;  2XJP A;  3VPB E;  5DM6 1;  1JYB A;  4RXN A;  1R0F A;  4AR4 A;  2CR8 A;  1VCX A;  8RXN A;  3B08 B;  1DVB A;  1LKO A;  3P2A A;  2ERJ A;  7RXN A;  3NFP I;  2KN9 A;  1BQ9 A;  4JAG A;  1S24 A;  4AR6 A;  1VZI A;  1YK4 A;  1YUX A;  2PPT A;  3RYG A;  1YUZ A;  3K35 A;  2L0Z A;  2XJQ A;  3WWL A;  3ZG6 A;  3LNL A;  3J7Z 1;  5DM7 1;  2MS3 A;  1B13 A;  1OWC A;  2JI2 A;  2PVX A;  2PYA A;  4XGH A;  1R0J A;  3PKI A;  4TPU A;  2XJR A;  1BQ8 A;  3QVD A;  3QQC E;  2JI3 A;  5MFP A;  2J9U B;  2Z3R B;  2LCQ A;  2CKC A;  3SS2 A;  1IU5 A;  5GAE c;  1IU6 A;  2XJU A;  2QL0 A;  2RDV A;  5GAD c;  1IRO A;  1S30 A;  2HR5 A;  3PWF A;  1FHM A;  3KYW A;  1YV1 A;  4UY8 1;  4XXB B;  1T9Q A;  4G6B A;  5AI3 A;  1BRF A;  1RWD A;  2ZIX A;  2BE5 D;  2A6H D;  3MSU A;  2V3B B;  4JAE A;  5MLC 3;  2O5J D;  2C6B A;  1H7V A;  3P8B A;  1T9P A;  2V0F A;  3KYU A;  1IRN A;  3PIP 1;  1VZH A;  5JVH 1;  4K9F A;  6RXN A;  1DX8 A;  4AI3 A;  2ERS A;  4V19 6;  4AI0 A;  1BE7 A;  3WWN B;  2K2D A;  4JAD A;  1R0G A;  4B8C D;  2XJT A;  3J7Y 1;  5GAH c;  1FHH A;  3LPE B;  3IU3 I;  2V0E A;  3PKJ A;  4LHN A;  5EIO C;  5MGN A;  1E8J A;  4E6Y A;  5IY0 A;  4AR5 A;  5AN9 H;  4AHX A;  5JVG 1;  3MPS A;  4ME3 A;  5RXN A;  5GAG c;  2PVE A;  2PSM C;  1R0H A;  3B0A B;  5AI2 A;  1LKM A;  2M6P A;  1QYB A;  1NXG A;  2M4V A;  1RB9 A;  3KYX A;  1YK5 A;  3PIO 1;  4WFN 1;  1LTL A;  2M4Y A;  2XJV A;  4JAF A;  4GS7 D;  1RYQ A;  1CAD A;  1B71 A;  1WJV A;  2M6O A;  2GMG A;  2C6A A;  3PZA A;  4AHW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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