1IU6A

Neutron crystal structure of the rubredoxin mutant from pyrococcus furiosus
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
51
structure length
51
Chain Sequence
AKYVCKICGYIYDEDAGDPDNGVSPGTKFEEIPDDWVCPICGAPKSEFEKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords rubredoxin
publication title A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 9
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2002-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1iu6A00
2V3BB 1LTLA 1SMMA 1NNQA 7RXNA 3A44A 4AR4A 1RYTA 1R0FA 4AR3A 5AI3A 3KYUA 3RYGA 1CADA 1YK4A 4AR5A 2K2DA 2PVXA 6RXNA 4TPUA 4AR6A 1JYBA 4RXNA 3SS2A 1T9OA 1IU5A 1S30A 1VCXA 4YWLA 1SMWA 1CAAA 2RDVA 1RWDA 1LKPA 2GMGA 1BRFA 2PYAA 4POFA 1SMUA 1RDVA 8RXNA 1BQ9A 1RDGA 4K9FA 2QL0A 3RZ6A 1B2OA 2MS3A 1IU6A 3KYWA 2M4YA 3MPSA 3PZAA 3RZTA 4POGA 2LCQA 1T9QA 5IY0A 1LKOA 1B2JA 5RXNA 1R0HA 1QCVA 2PVEA 1BQ8A 1B71A 1BFYA 1YV1A 2KN9A 1YUZA 3KYXA 1YUXA 1LKMA 1R0IA 1FHHA 1FHMA 1H7VA 2DSXA 2KKDA 4YWMA 1RB9A 1C09A 2HR5A 1ZRPA 5AI2A 1E8JA 1T9PA 1R0GA 3KYYA 1B13A 1QYBA 4ME3A 1IRNA 1DVBA 1R0JA 1DX8A 1S24A 2VL6A 1BE7A 3QVDA 3PWFA 1IROA 1YK5A 3KYVA 1S2ZA
chains in the Genus database with same CATH superfamily
1NXGA 3GTJL 2PMZP 1SMMA 3GTPL 3HOWL 4AI0A 3A44A 2JI2A 3LWRB 5AI3A 4BY7L 4V196 2HVYC 4A3DL 3H9BA 2K2DA 2CKCA 4AI3A 2XJPA 4A3IL 3WWNB 1WJVA 2B63L 1Y1VL 2JA8L 1S30A 4YWLA 3PO2L 3ZG6A 1SMWA 2BE5D 2PYAA 1F4LA 3PKIA 3QQCE 2R93L 4K9FA 2O5JD 2NVQL 4XXBB 2XJQA 1PFWA 3PZAA 2M4YA 5RXNA 3S1ML 3M4OL 2AYJA 1BQ8A 2L0ZA 5K2ME 3H0GL 1YUZA 3VPBE 2JA6L 3J7Z1 2M6OA 2V0FA 1PFVA 1K83L 2KKDA 4YWMA 3S15L 4A93L 3LPEB 1WCML 2JA7L 4A3FL 2JA5L 4AHXA 2CKAA 3H9CA 3GTOL 4JAGA 4BY1L 1P7PA 3CQZL 2M4VA 5IYCL 3GTLL 1RYQA 3IU3I 2A69D 5IP7L 3LWOB 1TWHL 2R7ZL 1QQTA 3LWVB 4AR4A 1RYTA 3KYUA 3RZOL 3M3YL 4A3JL 3S1NL 3RYGA 2C6AA 3B0AB 6RXNA 4TPUA 1I3QL 5GAEc 3HOZL 3SS2A 1PFUA 1T9OA 2NVTL 1VZHA 1VCXA 2JI1A 1VZGA 5M5WL 3I4NL 4QIWP 1LKPA 1BRFA 3S14L 3S2HL 4C3HL 1BQ9A 2Y0SP 4U671 3PL5A 3B08B 1I50L 4A3CL 1IU6A 3KYWA 3MPSA 3S17L 3HOXL 1T9QA 4A3KL 1B2JA 1VZIA 5C4XL 1BFYA 3S1QL 3KYXA 1YUXA 4E6YA 3H97A 5MFZA 1FHHA 1FHMA 1Y1WL 2VUML 3I4ML 4LHLA 2E2HL 5DM61 1PFYA 1RB9A 5M5YL 3PO3L 1ZRPA 5AI2A 1E8JA 1OWCA 5H1Sc 1R0GA 3KYYA 3HJWB 2NVXL 1QYBA 3HJYB 4ME3A 1TWGL 1IRNA 1DVBA 3J7Y1 1S24A 2VL6A 3QVDA 4XGHA 3PWFA 1IROA 3HKZP 5FJ8L 3MSUA 5JVG1 1S2ZA 2V3BB 2E2IL 5C4JL 2A68D 3LWQB 3FDJA 5EIOC 5MFPA 1PZXA 1R0FA 5IYDL 4LHNA 4ZN3B 5MF6A 4A3GL 4BBSL 2APOB 1CADA 1ODHA 3WWLA 1TWFL 5C3EL 4AI1A 4X6AL 1IU5A 2XJVA 2M6PA 1RWDA 3RZDL 3HAXC 2GMGA 3LWPB 1SMUA 4JADA 2NVYL 3MQKB 3PKJA 3RZ6A 2Z3RB 1B2OA 2MS3A 2R92L 4TVMA 4AI2A 2ERJA 2LCQA 1LKOA 1R0HA 1QCVA 3K7AL 5M5XL 2PSMC 1B71A 1YV1A 2Z3QB 5M3ML 2KN9A 2ERSA 4AYBP 5GADc 1H7VA 4AHWA 2DSXA 2EY4E 4A3EL 4C3JL 5FLML 5MGNA 3LNLA 4JAFA 5EINC 3P2AA 2PPTA 5AN9H 1BE7A 3P8BA 1IW7D 3HOUL 3GTGL 1TWCL 2A6ED 2B5ID 2A6HD 1YK5A 4GS7D 1LTLA 2AQCA 3K35A 1NNQA 4JAEA 7RXNA 2CR8A 4AR3A 1OWBA 4A3LL 3HOYL 2J9UB 3HOVL 1YK4A 4AR5A 2PVXA 4AR6A 1JYBA 4RXNA 3GTQL 3FKIL 3GTML 2H12A 4BBRL 4G6BA 3S16L 5JVH1 3S2DL 2WAQP 1CAAA 2RDVA 5DM71 4C3IL 2YU9L 5C44L 3H3VM 4POFA 3NFPI 1RDVA 8RXNA 2AUSB 1RDGA 2QL0A 2C6BA 3S1RL 2NYDA 3H99A 5IYBL 5IP9L 4AHZA 4ZN1B 4POGA 2V0EA 3RZTA 5IY0A 4A3BL 2WB1P 2PVEA 3JR7A 1R9TL 2ZIXA 2JI3A 4BXXL 1TWAL 2RFKB 2XJRA 1LKMA 5MLC3 1R0IA 4A3ML 2XJTA 4Y52L 1C09A 4Y7NL 1Z92B 2HR5A 4B8CD 1T9PA 3PIP1 4UY81 1B13A 3PIO1 5GAHc 5M3FL 2XJUA 4WFN1 1R0JA 5GAGc 4AHYA 1DX8A 2E2JL 1NXEA 1I6HL 3GTKL 4C2M1 2XJSA 1SFOL 3KYVA
chains in the Genus database with same CATH topology
2V3BB 1NXGA 1LTLA 1SMMA 3K35A 1NNQA 4JAEA 4AI0A 7RXNA 1ODHA 3A44A 2JI2A 2A68D 5EIOC 2CR8A 5MFPA 4AR4A 1RYTA 1R0FA 4AR3A 1OWBA 3KYUA 5AI3A 4V196 4LHNA 4ZN3B 5MF6A 3RYGA 2C6AA 2J9UB 1CADA 1YK4A 3B0AB 4AR5A 2K2DA 2PVXA 3WWLA 6RXNA 4TPUA 2CKCA 4AI3A 4AR6A 2XJPA 1JYBA 5GAEc 4RXNA 3SS2A 3WWNB 4AI1A 1WJVA 1T9OA 2H12A 4G6BA 1IU5A 1VZHA 1S30A 1VCXA 4YWLA 3ZG6A 5JVH1 2XJVA 1SMWA 2M6PA 2JI1A 1CAAA 2RDVA 1VZGA 5DM71 1RWDA 2BE5D 1LKPA 2GMGA 1BRFA 2PYAA 4POFA 1SMUA 4JADA 3NFPI 1RDVA 3PKIA 8RXNA 3QQCE 1BQ9A 1RDGA 4K9FA 4U671 2O5JD 2QL0A 2C6BA 3B08B 3PKJA 2Z3RB 1B2OA 2MS3A 2NYDA 3RZ6A 4POGA 4TVMA 4XXBB 4AI2A 4AHZA 2XJQA 4ZN1B 1IU6A 2ERJA 2M4YA 2V0EA 3KYWA 3MPSA 3PZAA 3RZTA 2LCQA 1T9QA 5IY0A 1LKOA 1B2JA 5RXNA 1R0HA 1VZIA 1QCVA 2PVEA 2AYJA 1BQ8A 2ZIXA 2PSMC 2JI3A 1B71A 2L0ZA 1BFYA 5K2ME 1YV1A 2Z3QB 2KN9A 1YUZA 3KYXA 2XJRA 1YUXA 1LKMA 2ERSA 3VPBE 4E6YA 5MLC3 1R0IA 5MFZA 1FHHA 3J7Z1 1FHMA 2M6OA 5GADc 1H7VA 2V0FA 4AHWA 2DSXA 4LHLA 5DM61 2KKDA 4YWMA 2XJTA 3LPEB 1RB9A 1C09A 1Z92B 2HR5A 1ZRPA 5AI2A 4B8CD 1OWCA 5MGNA 5H1Sc 1E8JA 1T9PA 1R0GA 3PIP1 4UY81 3KYYA 1B13A 1QYBA 3PIO1 3LNLA 4AHXA 5GAHc 2CKAA 4ME3A 1IRNA 2XJUA 4JAFA 1DVBA 4WFN1 5EINC 4JAGA 1R0JA 5GAGc 4AHYA 3P2AA 1DX8A 2PPTA 3J7Y1 5AN9H 1S24A 2VL6A 1BE7A 3QVDA 3P8BA 4XGHA 1IW7D 1NXEA 2M4VA 3PWFA 1RYQA 3IU3I 2XJSA 2A69D 2A6ED 1IROA 2B5ID 2A6HD 1YK5A 3MSUA 5JVG1 3KYVA 4GS7D 1S2ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V3B B;  1LTL A;  1SMM A;  1NNQ A;  7RXN A;  3A44 A;  4AR4 A;  1RYT A;  1R0F A;  4AR3 A;  5AI3 A;  3KYU A;  3RYG A;  1CAD A;  1YK4 A;  4AR5 A;  2K2D A;  2PVX A;  6RXN A;  4TPU A;  4AR6 A;  1JYB A;  4RXN A;  3SS2 A;  1T9O A;  1IU5 A;  1S30 A;  1VCX A;  4YWL A;  1SMW A;  1CAA A;  2RDV A;  1RWD A;  1LKP A;  2GMG A;  1BRF A;  2PYA A;  4POF A;  1SMU A;  1RDV A;  8RXN A;  1BQ9 A;  1RDG A;  4K9F A;  2QL0 A;  3RZ6 A;  1B2O A;  2MS3 A;  1IU6 A;  3KYW A;  2M4Y A;  3MPS A;  3PZA A;  3RZT A;  4POG A;  2LCQ A;  1T9Q A;  5IY0 A;  1LKO A;  1B2J A;  5RXN A;  1R0H A;  1QCV A;  2PVE A;  1BQ8 A;  1B71 A;  1BFY A;  1YV1 A;  2KN9 A;  1YUZ A;  3KYX A;  1YUX A;  1LKM A;  1R0I A;  1FHH A;  1FHM A;  1H7V A;  2DSX A;  2KKD A;  4YWM A;  1RB9 A;  1C09 A;  2HR5 A;  1ZRP A;  5AI2 A;  1E8J A;  1T9P A;  1R0G A;  3KYY A;  1B13 A;  1QYB A;  4ME3 A;  1IRN A;  1DVB A;  1R0J A;  1DX8 A;  1S24 A;  2VL6 A;  1BE7 A;  3QVD A;  3PWF A;  1IRO A;  1YK5 A;  3KYV A;  1S2Z A; 
#chains in the Genus database with same CATH topology
 1NXG A;  3GTJ L;  2PMZ P;  1SMM A;  3GTP L;  3HOW L;  4AI0 A;  3A44 A;  2JI2 A;  3LWR B;  5AI3 A;  4BY7 L;  4V19 6;  2HVY C;  4A3D L;  3H9B A;  2K2D A;  2CKC A;  4AI3 A;  2XJP A;  4A3I L;  3WWN B;  1WJV A;  2B63 L;  1Y1V L;  2JA8 L;  1S30 A;  4YWL A;  3PO2 L;  3ZG6 A;  1SMW A;  2BE5 D;  2PYA A;  1F4L A;  3PKI A;  3QQC E;  2R93 L;  4K9F A;  2O5J D;  2NVQ L;  4XXB B;  2XJQ A;  1PFW A;  3PZA A;  2M4Y A;  5RXN A;  3S1M L;  3M4O L;  2AYJ A;  1BQ8 A;  2L0Z A;  5K2M E;  3H0G L;  1YUZ A;  3VPB E;  2JA6 L;  3J7Z 1;  2M6O A;  2V0F A;  1PFV A;  1K83 L;  2KKD A;  4YWM A;  3S15 L;  4A93 L;  3LPE B;  1WCM L;  2JA7 L;  4A3F L;  2JA5 L;  4AHX A;  2CKA A;  3H9C A;  3GTO L;  4JAG A;  4BY1 L;  1P7P A;  3CQZ L;  2M4V A;  5IYC L;  3GTL L;  1RYQ A;  3IU3 I;  2A69 D;  5IP7 L;  3LWO B;  1TWH L;  2R7Z L;  1QQT A;  3LWV B;  4AR4 A;  1RYT A;  3KYU A;  3RZO L;  3M3Y L;  4A3J L;  3S1N L;  3RYG A;  2C6A A;  3B0A B;  6RXN A;  4TPU A;  1I3Q L;  5GAE c;  3HOZ L;  3SS2 A;  1PFU A;  1T9O A;  2NVT L;  1VZH A;  1VCX A;  2JI1 A;  1VZG A;  5M5W L;  3I4N L;  4QIW P;  1LKP A;  1BRF A;  3S14 L;  3S2H L;  4C3H L;  1BQ9 A;  2Y0S P;  4U67 1;  3PL5 A;  3B08 B;  1I50 L;  4A3C L;  1IU6 A;  3KYW A;  3MPS A;  3S17 L;  3HOX L;  1T9Q A;  4A3K L;  1B2J A;  1VZI A;  5C4X L;  1BFY A;  3S1Q L;  3KYX A;  1YUX A;  4E6Y A;  3H97 A;  5MFZ A;  1FHH A;  1FHM A;  1Y1W L;  2VUM L;  3I4M L;  4LHL A;  2E2H L;  5DM6 1;  1PFY A;  1RB9 A;  5M5Y L;  3PO3 L;  1ZRP A;  5AI2 A;  1E8J A;  1OWC A;  5H1S c;  1R0G A;  3KYY A;  3HJW B;  2NVX L;  1QYB A;  3HJY B;  4ME3 A;  1TWG L;  1IRN A;  1DVB A;  3J7Y 1;  1S24 A;  2VL6 A;  3QVD A;  4XGH A;  3PWF A;  1IRO A;  3HKZ P;  5FJ8 L;  3MSU A;  5JVG 1;  1S2Z A;  2V3B B;  2E2I L;  5C4J L;  2A68 D;  3LWQ B;  3FDJ A;  5EIO C;  5MFP A;  1PZX A;  1R0F A;  5IYD L;  4LHN A;  4ZN3 B;  5MF6 A;  4A3G L;  4BBS L;  2APO B;  1CAD A;  1ODH A;  3WWL A;  1TWF L;  5C3E L;  4AI1 A;  4X6A L;  1IU5 A;  2XJV A;  2M6P A;  1RWD A;  3RZD L;  3HAX C;  2GMG A;  3LWP B;  1SMU A;  4JAD A;  2NVY L;  3MQK B;  3PKJ A;  3RZ6 A;  2Z3R B;  1B2O A;  2MS3 A;  2R92 L;  4TVM A;  4AI2 A;  2ERJ A;  2LCQ A;  1LKO A;  1R0H A;  1QCV A;  3K7A L;  5M5X L;  2PSM C;  1B71 A;  1YV1 A;  2Z3Q B;  5M3M L;  2KN9 A;  2ERS A;  4AYB P;  5GAD c;  1H7V A;  4AHW A;  2DSX A;  2EY4 E;  4A3E L;  4C3J L;  5FLM L;  5MGN A;  3LNL A;  4JAF A;  5EIN C;  3P2A A;  2PPT A;  5AN9 H;  1BE7 A;  3P8B A;  1IW7 D;  3HOU L;  3GTG L;  1TWC L;  2A6E D;  2B5I D;  2A6H D;  1YK5 A;  4GS7 D;  1LTL A;  2AQC A;  3K35 A;  1NNQ A;  4JAE A;  7RXN A;  2CR8 A;  4AR3 A;  1OWB A;  4A3L L;  3HOY L;  2J9U B;  3HOV L;  1YK4 A;  4AR5 A;  2PVX A;  4AR6 A;  1JYB A;  4RXN A;  3GTQ L;  3FKI L;  3GTM L;  2H12 A;  4BBR L;  4G6B A;  3S16 L;  5JVH 1;  3S2D L;  2WAQ P;  1CAA A;  2RDV A;  5DM7 1;  4C3I L;  2YU9 L;  5C44 L;  3H3V M;  4POF A;  3NFP I;  1RDV A;  8RXN A;  2AUS B;  1RDG A;  2QL0 A;  2C6B A;  3S1R L;  2NYD A;  3H99 A;  5IYB L;  5IP9 L;  4AHZ A;  4ZN1 B;  4POG A;  2V0E A;  3RZT A;  5IY0 A;  4A3B L;  2WB1 P;  2PVE A;  3JR7 A;  1R9T L;  2ZIX A;  2JI3 A;  4BXX L;  1TWA L;  2RFK B;  2XJR A;  1LKM A;  5MLC 3;  1R0I A;  4A3M L;  2XJT A;  4Y52 L;  1C09 A;  4Y7N L;  1Z92 B;  2HR5 A;  4B8C D;  1T9P A;  3PIP 1;  4UY8 1;  1B13 A;  3PIO 1;  5GAH c;  5M3F L;  2XJU A;  4WFN 1;  1R0J A;  5GAG c;  4AHY A;  1DX8 A;  2E2J L;  1NXE A;  1I6H L;  3GTK L;  4C2M 1;  2XJS A;  1SFO L;  3KYV A; 
#chains in the Genus database with same CATH homology
 2V3B B;  1NXG A;  1LTL A;  1SMM A;  3K35 A;  1NNQ A;  4JAE A;  4AI0 A;  7RXN A;  1ODH A;  3A44 A;  2JI2 A;  2A68 D;  5EIO C;  2CR8 A;  5MFP A;  4AR4 A;  1RYT A;  1R0F A;  4AR3 A;  1OWB A;  3KYU A;  5AI3 A;  4V19 6;  4LHN A;  4ZN3 B;  5MF6 A;  3RYG A;  2C6A A;  2J9U B;  1CAD A;  1YK4 A;  3B0A B;  4AR5 A;  2K2D A;  2PVX A;  3WWL A;  6RXN A;  4TPU A;  2CKC A;  4AI3 A;  4AR6 A;  2XJP A;  1JYB A;  5GAE c;  4RXN A;  3SS2 A;  3WWN B;  4AI1 A;  1WJV A;  1T9O A;  2H12 A;  4G6B A;  1IU5 A;  1VZH A;  1S30 A;  1VCX A;  4YWL A;  3ZG6 A;  5JVH 1;  2XJV A;  1SMW A;  2M6P A;  2JI1 A;  1CAA A;  2RDV A;  1VZG A;  5DM7 1;  1RWD A;  2BE5 D;  1LKP A;  2GMG A;  1BRF A;  2PYA A;  4POF A;  1SMU A;  4JAD A;  3NFP I;  1RDV A;  3PKI A;  8RXN A;  3QQC E;  1BQ9 A;  1RDG A;  4K9F A;  4U67 1;  2O5J D;  2QL0 A;  2C6B A;  3B08 B;  3PKJ A;  2Z3R B;  1B2O A;  2MS3 A;  2NYD A;  3RZ6 A;  4POG A;  4TVM A;  4XXB B;  4AI2 A;  4AHZ A;  2XJQ A;  4ZN1 B;  1IU6 A;  2ERJ A;  2M4Y A;  2V0E A;  3KYW A;  3MPS A;  3PZA A;  3RZT A;  2LCQ A;  1T9Q A;  5IY0 A;  1LKO A;  1B2J A;  5RXN A;  1R0H A;  1VZI A;  1QCV A;  2PVE A;  2AYJ A;  1BQ8 A;  2ZIX A;  2PSM C;  2JI3 A;  1B71 A;  2L0Z A;  1BFY A;  5K2M E;  1YV1 A;  2Z3Q B;  2KN9 A;  1YUZ A;  3KYX A;  2XJR A;  1YUX A;  1LKM A;  2ERS A;  3VPB E;  4E6Y A;  5MLC 3;  1R0I A;  5MFZ A;  1FHH A;  3J7Z 1;  1FHM A;  2M6O A;  5GAD c;  1H7V A;  2V0F A;  4AHW A;  2DSX A;  4LHL A;  5DM6 1;  2KKD A;  4YWM A;  2XJT A;  3LPE B;  1RB9 A;  1C09 A;  1Z92 B;  2HR5 A;  1ZRP A;  5AI2 A;  4B8C D;  1OWC A;  5MGN A;  5H1S c;  1E8J A;  1T9P A;  1R0G A;  3PIP 1;  4UY8 1;  3KYY A;  1B13 A;  1QYB A;  3PIO 1;  3LNL A;  4AHX A;  5GAH c;  2CKA A;  4ME3 A;  1IRN A;  2XJU A;  4JAF A;  1DVB A;  4WFN 1;  5EIN C;  4JAG A;  1R0J A;  5GAG c;  4AHY A;  3P2A A;  1DX8 A;  2PPT A;  3J7Y 1;  5AN9 H;  1S24 A;  2VL6 A;  1BE7 A;  3QVD A;  3P8B A;  4XGH A;  1IW7 D;  1NXE A;  2M4V A;  3PWF A;  1RYQ A;  3IU3 I;  2XJS A;  2A69 D;  2A6E D;  1IRO A;  2B5I D;  2A6H D;  1YK5 A;  3MSU A;  5JVG 1;  3KYV A;  4GS7 D;  1S2Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...