1J6WA

Crystal structure of haemophilus influenzae luxs
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
161
structure length
161
Chain Sequence
LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLSLDN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
publication title A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 41
structure length 161
sequence length 161
chains with identical sequence B
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j6wA00
5E68A 4XCHA 1INNA 1JVIA 1J6WA 1JQWA 1VGXA 1JOEA 1J6XA 1IE0A 2FQTA 2FQOA 1VH2A 1VJEA 1J6VA 1YCLA 1J98A
chains in the Genus database with same CATH superfamily
4A3DC 1JVIA 1TWCA 1I50C 3GIRA 2CFAA 4BY7C 3I4MC 4C3JC 3VA7A 1J98A 3PO2K 3M4OC 2NVXC 2D6FC 3S1NK 4BXXC 1USOA 2Y3PA 2WAQD 3PO3C 3GTJC 4G7ZA 4KB2A 4A3KK 2ZUFA 2Y0SL 3GTGA 1XPPA 1IQ0A 3CQZA 1WOPA 2B63K 4A3IK 1BDFA 3QX3A 4BY1K 3H3VL 1EH1A 3LAPA 1YNJA 3N0BA 4XLNA 1WCMK 2JA8C 3N0CA 3GDZA 3HOVC 1Y1VA 3HXAA 5FLMK 4LOWA 1EQRA 1TWFC 1VLOA 1Y1WC 2JA6C 2NVTK 2JA7C 3GTKK 2PHCB 4A3BC 5M5YK 1UV7A 2NVYA 1I6HC 4LJZA 4J3NA 1DCOA 1IL2A 5E68A 3LPXA 1SFOK 1B4AA 5IYCC 5CJ9A 2R93C 1K83C 1F93A 4C3IK 3RZOK 4A3JK 4MQ9A 3GTPC 3S17K 4P9SA 4GTCA 3NUHA 5IYBK 1TWHC 1BGWA 3GTJA 4GTFA 2NVQK 3HOXC 1TWGC 3AD8C 4OINA 2KWAA 3G4CA 3T02A 2E2JC 2E2IK 1YX2A 3V4GA 3K7AC 3H3VD 1ZQ1C 4KB4A 3S1RC 2R7ZK 1G51A 4OIPA 3DXJA 3GTQA 1BS2A 1WOSA 4BBSC 2A69A 3L4KA 5C44C 5IOTA 2JH3A 1USMA 3AD9C 2VUMK 4A3LC 4A3GC 1RU0A 5TMCA 2WAQL 3FOFA 3EQLA 3H0GK 4YFNA 3CQZC 4Y52K 5IORA 2B63A 2W7VA 2XCRB 1TWAC 3GTMA 3TFIA 4A93C 1PJ6A 1WCMA 4C2MC 2R93A 1R9TA 1V5VA 1O26A 3HOWK 1O2AA 5D4DA 5M3FK 2P8TA 4YFXA 2ZUEA 2PA8D 3S14K 2BE5A 3HOUK 4A3DK 1GE9A 5M3MK 1J6WA 3Q3QA 1I3QK 2NVYC 1I50K 4KAWX 1TWGA 1YNNA 1ZYRA 1XZPB 1SFOA 4BY7K 4GTAA 2EBBA 4WILA 4FZBA 4A3CC 4C3JK 2FQTA 1AB4A 2FQOA 5L46A 2NVXK 3I4NK 4P5BA 4BXXK 2R92K 3GEEA 3A8IA 1EFWA 2A68A 3HKZL 3HOZC 3S0XA 1I6VA 1VRQC 2A6HA 3OPFA 5C4JC 5EGEA 1EI6A 3T01A 4KDDA 1JOEA 2V6UA 4KMDA 4G0WA 1ZVUA 1DD5A 1TWAA 3GEIA 3RZDK 3A8KA 2R7ZA 1XXAA 3FKIK 3PO2C 3GTQC 3L4JA 1WSVA 4A3FC 5HL8A 3GTOA 3GTLK 3S2HK 1HI9A 4LK0A 1ZXOA 4LQYA 1WSRA 4GTBA 4Y7NK 4X6AK 1X31C 3SZZA 2JA7K 1SMYA 4A3KC 1PJ5A 4C45A 4O2DA 3HOYK 4YFKA 1L0WA 2B63C 4A3IC 3GTMC 4GFQA 4BY1C 2PPBA 4M1XA 3ERED 4A3EK 1WCMC 4C3HK 1WORA 5IOQA 5FLMC 1R9TC 3S16K 3HKZD 2A6EA 3FOEA 3N3YA 2YU9K 3TFHA 5IP9K 4KM8A 2JA5K 2PA8L 1XXCA 2V6SA 1TWCK 5FJ8K 3HOXK 3JSTA 4GTEA 2GAHC 3S2DC 4ZH4A 1SFOC 3S1RK 5CHPA 3S15K 4OIQA 1O2FB 5C3EC 1XXBA 4C3IC 1O27A 2O5IA 3S1QK 4MEYA 5IYDK 4A3JC 4KMHA 2R92A 3M3YC 1B4BA 1HQMA 4FM9A 4KASA 2RH6A 3BP3A 4KC6A 5IYBC 4BBRK 3AH5A 4A3GK 1XZPA 2RGRA 3A8JA 3GTGK 2WB1D 3CQZK 2E2IC 2P5MA 2E2HK 1PJ7A 4A3MK 4A93K 5IP7K 2O5JA 4OIOA 2R7ZC 1C0AA 1J6XA 4C2MK 5C4XC 3FKIA 1Y1VK 4NOIA 1IE0A 3GTOC 1JQWA 1VJEA 4XLPA 4GTDA 3S1MK 1WIHA 2VUMC 1O28A 3H0GC 3GTKA 4Y52C 4QJVB 1XZQB 4A3CK 3TFJA 1VH2A 3I4MK 3M4OK 4LLGA 3HOWC 5TMFA 5M5WK 1O25A 1YCLA 4XSZA 4KARA 2GSUA 4PABA 3CAGA 4DDQA 1O24A 2YU9A 3S14C 3HOUC 3PO3K 2JA5A 3GTJK 1I3QC 2E2IA 3WODA 1INNA 1IBAA 4YG2A 1O2BA 2GSNA 3BUEA 3G4AA 3GTQK 2JA8K 1WQHA 4A3FK 3HOVK 3I4NC 1IW7A 2R92C 4BKWA 3S1NC 1TWFK 1Y1WK 2GAGC 3ADAC 4KN4A 4QIWL 4G0UA 2JA6K 2VUMA 4A3BK 3H0GA 4LR2A 4P5AA 1I6HK 2WB1L 2E2HA 4Q4ZA 3GTMK 4AH6A 1IS1A 4AYBL 3RZDC 4WJ4A 5IYCK 4KM9A 1O29A 3FKIC 2V6TA 1J6VA 2R93K 2CFAB 1K83K 4XSXA 4GT9A 1R9TK 5M5XK 3GTLC 2XCOA 3GTPK 4G0VA 3S2HC 1F7VA 3AQOA 4G7OA 4Y7NC 4X6AC 1TWHK 4WJ3M 2NVTC 5JVOA 3GTKC 4GZYA 1TWGK 2ZFZA 1I3QA 3HOYC 3S2DK 1I50A 3MMLB 3SZYA 3TTGA 4BLAA 2E2JK 4KMAA 3K7AK 4PAAA 4GTLA 1F7UA 5C3EK 1EK8A 4A3EC 4C3HC 4OIRA 4XCHA 2NVXA 4BBSK 3RZOC 5C44K 4ILDA 3S16C 3M3YK 3S17C 4KATA 4KN7A 4LK1A 4QIWD 5EGHA 2PMZL 2YU9C 5IP9C 2JA5C 3GEHA 4A3LK 2Y0SD 3IPJA 4QJVA 1TWCC 1F9NA 1KQ4A 1XZQA 2NVQC 3OREA 1DCHA 5IOSA 3T00A 4AYBD 1ISEA 4RMFA 1TWAK 4G7HA 5C4XK 3S15C 2XCQA 1ZBSA 1BJTA 5IYDC 3S1QC 3GTOK 3FHZA 4BLBA 3GTLA 3AD7C 1TWFA 4JK1A 1WQFA 5JFEA 1VGXA 1Y1WA 4BBRC 2JA6A 2JA7A 1WOOA 3GTGC 2CW0A 2NVYK 3BP8C 2E2HC 4A3MC 5IP7C 1DCPA 3AQPA 4MEXA 1K83A 1Y1VC 3OEPA 2GSOA 3GSIA 3GTPA 1WQGA 3S1MC 2PMZD 5TJ3A 3HOZK 4Q5SA 1TWHA 3LAJA 4KMUA 5C4JK
chains in the Genus database with same CATH topology
5E68A 4XCHA 1INNA 1JVIA 1J6WA 1JQWA 1VGXA 1JOEA 1J6XA 1IE0A 2FQTA 2FQOA 1VH2A 1VJEA 1J6VA 1YCLA 1J98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E68 A;  4XCH A;  1INN A;  1JVI A;  1J6W A;  1JQW A;  1VGX A;  1JOE A;  1J6X A;  1IE0 A;  2FQT A;  2FQO A;  1VH2 A;  1VJE A;  1J6V A;  1YCL A;  1J98 A; 
#chains in the Genus database with same CATH topology
 4A3D C;  1JVI A;  1TWC A;  1I50 C;  3GIR A;  2CFA A;  4BY7 C;  3I4M C;  4C3J C;  3VA7 A;  1J98 A;  3PO2 K;  3M4O C;  2NVX C;  2D6F C;  3S1N K;  4BXX C;  1USO A;  2Y3P A;  2WAQ D;  3PO3 C;  3GTJ C;  4G7Z A;  4KB2 A;  4A3K K;  2ZUF A;  2Y0S L;  3GTG A;  1XPP A;  1IQ0 A;  3CQZ A;  1WOP A;  2B63 K;  4A3I K;  1BDF A;  3QX3 A;  4BY1 K;  3H3V L;  1EH1 A;  3LAP A;  1YNJ A;  3N0B A;  4XLN A;  1WCM K;  2JA8 C;  3N0C A;  3GDZ A;  3HOV C;  1Y1V A;  3HXA A;  5FLM K;  4LOW A;  1EQR A;  1TWF C;  1VLO A;  1Y1W C;  2JA6 C;  2NVT K;  2JA7 C;  3GTK K;  2PHC B;  4A3B C;  5M5Y K;  1UV7 A;  2NVY A;  1I6H C;  4LJZ A;  4J3N A;  1DCO A;  1IL2 A;  5E68 A;  3LPX A;  1SFO K;  1B4A A;  5IYC C;  5CJ9 A;  2R93 C;  1K83 C;  1F93 A;  4C3I K;  3RZO K;  4A3J K;  4MQ9 A;  3GTP C;  3S17 K;  4P9S A;  4GTC A;  3NUH A;  5IYB K;  1TWH C;  1BGW A;  3GTJ A;  4GTF A;  2NVQ K;  3HOX C;  1TWG C;  3AD8 C;  4OIN A;  2KWA A;  3G4C A;  3T02 A;  2E2J C;  2E2I K;  1YX2 A;  3V4G A;  3K7A C;  3H3V D;  1ZQ1 C;  4KB4 A;  3S1R C;  2R7Z K;  1G51 A;  4OIP A;  3DXJ A;  3GTQ A;  1BS2 A;  1WOS A;  4BBS C;  2A69 A;  3L4K A;  5C44 C;  5IOT A;  2JH3 A;  1USM A;  3AD9 C;  2VUM K;  4A3L C;  4A3G C;  1RU0 A;  5TMC A;  2WAQ L;  3FOF A;  3EQL A;  3H0G K;  4YFN A;  3CQZ C;  4Y52 K;  5IOR A;  2B63 A;  2W7V A;  2XCR B;  1TWA C;  3GTM A;  3TFI A;  4A93 C;  1PJ6 A;  1WCM A;  4C2M C;  2R93 A;  1R9T A;  1V5V A;  1O26 A;  3HOW K;  1O2A A;  5D4D A;  5M3F K;  2P8T A;  4YFX A;  2ZUE A;  2PA8 D;  3S14 K;  2BE5 A;  3HOU K;  4A3D K;  1GE9 A;  5M3M K;  1J6W A;  3Q3Q A;  1I3Q K;  2NVY C;  1I50 K;  4KAW X;  1TWG A;  1YNN A;  1ZYR A;  1XZP B;  1SFO A;  4BY7 K;  4GTA A;  2EBB A;  4WIL A;  4FZB A;  4A3C C;  4C3J K;  2FQT A;  1AB4 A;  2FQO A;  5L46 A;  2NVX K;  3I4N K;  4P5B A;  4BXX K;  2R92 K;  3GEE A;  3A8I A;  1EFW A;  2A68 A;  3HKZ L;  3HOZ C;  3S0X A;  1I6V A;  1VRQ C;  2A6H A;  3OPF A;  5C4J C;  5EGE A;  1EI6 A;  3T01 A;  4KDD A;  1JOE A;  2V6U A;  4KMD A;  4G0W A;  1ZVU A;  1DD5 A;  1TWA A;  3GEI A;  3RZD K;  3A8K A;  2R7Z A;  1XXA A;  3FKI K;  3PO2 C;  3GTQ C;  3L4J A;  1WSV A;  4A3F C;  5HL8 A;  3GTO A;  3GTL K;  3S2H K;  1HI9 A;  4LK0 A;  1ZXO A;  4LQY A;  1WSR A;  4GTB A;  4Y7N K;  4X6A K;  1X31 C;  3SZZ A;  2JA7 K;  1SMY A;  4A3K C;  1PJ5 A;  4C45 A;  4O2D A;  3HOY K;  4YFK A;  1L0W A;  2B63 C;  4A3I C;  3GTM C;  4GFQ A;  4BY1 C;  2PPB A;  4M1X A;  3ERE D;  4A3E K;  1WCM C;  4C3H K;  1WOR A;  5IOQ A;  5FLM C;  1R9T C;  3S16 K;  3HKZ D;  2A6E A;  3FOE A;  3N3Y A;  2YU9 K;  3TFH A;  5IP9 K;  4KM8 A;  2JA5 K;  2PA8 L;  1XXC A;  2V6S A;  1TWC K;  5FJ8 K;  3HOX K;  3JST A;  4GTE A;  2GAH C;  3S2D C;  4ZH4 A;  1SFO C;  3S1R K;  5CHP A;  3S15 K;  4OIQ A;  1O2F B;  5C3E C;  1XXB A;  4C3I C;  1O27 A;  2O5I A;  3S1Q K;  4MEY A;  5IYD K;  4A3J C;  4KMH A;  2R92 A;  3M3Y C;  1B4B A;  1HQM A;  4FM9 A;  4KAS A;  2RH6 A;  3BP3 A;  4KC6 A;  5IYB C;  4BBR K;  3AH5 A;  4A3G K;  1XZP A;  2RGR A;  3A8J A;  3GTG K;  2WB1 D;  3CQZ K;  2E2I C;  2P5M A;  2E2H K;  1PJ7 A;  4A3M K;  4A93 K;  5IP7 K;  2O5J A;  4OIO A;  2R7Z C;  1C0A A;  1J6X A;  4C2M K;  5C4X C;  3FKI A;  1Y1V K;  4NOI A;  1IE0 A;  3GTO C;  1JQW A;  1VJE A;  4XLP A;  4GTD A;  3S1M K;  1WIH A;  2VUM C;  1O28 A;  3H0G C;  3GTK A;  4Y52 C;  4QJV B;  1XZQ B;  4A3C K;  3TFJ A;  1VH2 A;  3I4M K;  3M4O K;  4LLG A;  3HOW C;  5TMF A;  5M5W K;  1O25 A;  1YCL A;  4XSZ A;  4KAR A;  2GSU A;  4PAB A;  3CAG A;  4DDQ A;  1O24 A;  2YU9 A;  3S14 C;  3HOU C;  3PO3 K;  2JA5 A;  3GTJ K;  1I3Q C;  2E2I A;  3WOD A;  1INN A;  1IBA A;  4YG2 A;  1O2B A;  2GSN A;  3BUE A;  3G4A A;  3GTQ K;  2JA8 K;  1WQH A;  4A3F K;  3HOV K;  3I4N C;  1IW7 A;  2R92 C;  4BKW A;  3S1N C;  1TWF K;  1Y1W K;  2GAG C;  3ADA C;  4KN4 A;  4QIW L;  4G0U A;  2JA6 K;  2VUM A;  4A3B K;  3H0G A;  4LR2 A;  4P5A A;  1I6H K;  2WB1 L;  2E2H A;  4Q4Z A;  3GTM K;  4AH6 A;  1IS1 A;  4AYB L;  3RZD C;  4WJ4 A;  5IYC K;  4KM9 A;  1O29 A;  3FKI C;  2V6T A;  1J6V A;  2R93 K;  2CFA B;  1K83 K;  4XSX A;  4GT9 A;  1R9T K;  5M5X K;  3GTL C;  2XCO A;  3GTP K;  4G0V A;  3S2H C;  1F7V A;  3AQO A;  4G7O A;  4Y7N C;  4X6A C;  1TWH K;  4WJ3 M;  2NVT C;  5JVO A;  3GTK C;  4GZY A;  1TWG K;  2ZFZ A;  1I3Q A;  3HOY C;  3S2D K;  1I50 A;  3MML B;  3SZY A;  3TTG A;  4BLA A;  2E2J K;  4KMA A;  3K7A K;  4PAA A;  4GTL A;  1F7U A;  5C3E K;  1EK8 A;  4A3E C;  4C3H C;  4OIR A;  4XCH A;  2NVX A;  4BBS K;  3RZO C;  5C44 K;  4ILD A;  3S16 C;  3M3Y K;  3S17 C;  4KAT A;  4KN7 A;  4LK1 A;  4QIW D;  5EGH A;  2PMZ L;  2YU9 C;  5IP9 C;  2JA5 C;  3GEH A;  4A3L K;  2Y0S D;  3IPJ A;  4QJV A;  1TWC C;  1F9N A;  1KQ4 A;  1XZQ A;  2NVQ C;  3ORE A;  1DCH A;  5IOS A;  3T00 A;  4AYB D;  1ISE A;  4RMF A;  1TWA K;  4G7H A;  5C4X K;  3S15 C;  2XCQ A;  1ZBS A;  1BJT A;  5IYD C;  3S1Q C;  3GTO K;  3FHZ A;  4BLB A;  3GTL A;  3AD7 C;  1TWF A;  4JK1 A;  1WQF A;  5JFE A;  1VGX A;  1Y1W A;  4BBR C;  2JA6 A;  2JA7 A;  1WOO A;  3GTG C;  2CW0 A;  2NVY K;  3BP8 C;  2E2H C;  4A3M C;  5IP7 C;  1DCP A;  3AQP A;  4MEX A;  1K83 A;  1Y1V C;  3OEP A;  2GSO A;  3GSI A;  3GTP A;  1WQG A;  3S1M C;  2PMZ D;  5TJ3 A;  3HOZ K;  4Q5S A;  1TWH A;  3LAJ A;  4KMU A;  5C4J K; 
#chains in the Genus database with same CATH homology
 5E68 A;  4XCH A;  1INN A;  1JVI A;  1J6W A;  1JQW A;  1VGX A;  1JOE A;  1J6X A;  1IE0 A;  2FQT A;  2FQO A;  1VH2 A;  1VJE A;  1J6V A;  1YCL A;  1J98 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...