1J6XA

Crystal structure of helicobacter pylori luxs
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
151
structure length
151
Chain Sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
publication title A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs.
pubmed doi rcsb
source organism Helicobacter pylori
total genus 43
structure length 151
sequence length 151
chains with identical sequence B
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j6xA00
1JQWA 4XCHA 1VJEA 1J98A 1IE0A 1JVIA 2FQTA 5E68A 1YCLA 1J6XA 1INNA 1J6WA 1VH2A 1JOEA 1J6VA 1VGXA 2FQOA
chains in the Genus database with same CATH superfamily
1ZYRA 3GTMK 3GTMC 1DCHA 5C4XK 5C4XC 2PA8L 3I4NK 3I4NC 1VRQC 3T00A 1EH1A 3FHZA 3AQOA 3GTMA 4C3HK 2GSUA 4LJZA 2PMZD 2YU9K 5FJ8K 3GTKC 3ADAC 2CFAA 4LR2A 3Q3QA 1BGWA 4BY1K 2NVYK 4BY1C 1WCMA 4XSZA 4OIRA 1I50K 1I50C 2XCQA 4G7HA 1ZVUA 3V4GA 1WQFA 4A3BK 4A3BC 3AQPA 3GTKA 4QIWD 4KM9A 1TWHK 4WJ3M 5C4JK 2P8TA 1ZXOA 5C4JC 1I50A 5IORA 1F7UA 2NVQK 2D6FC 2R93K 3AD9C 1WQHA 4OIOA 3OREA 3GTQK 3GTQC 3H3VD 3HOWC 3FOEA 1I3QK 3I4MK 3I4MC 1I3QC 2O5JA 1WOOA 3GEEA 4AH6A 3MMLB 4LQYA 3S16C 3TFHA 3SZYA 3N0CA 5C3EK 3GTPK 5C3EC 3GTPC 3GTQA 2VUMC 5FLMK 5FLMC 3S2HK 3S2HC 1I3QA 4AYBD 3AD8C 3GTOK 4KMHA 1EK8A 3GTOC 2E2HK 4GTCA 4A3MK 4A3MC 3A8IA 3GSIA 4QJVB 2NVXC 2JA5K 1SFOK 2JA5C 2VUMA 2CW0A 2A6HA 4C3JK 4LLGA 1K83C 4BY7K 4BY7C 1XZPA 4A3JK 2ZUFA 4A3JC 4YFXA 3GTOA 1YNJA 5E68A 1Y1WC 3K7AC 2W7VA 1XXAA 3HXAA 1SMYA 5M5XK 2NVXA 4A3CK 1XZQB 2JA5A 4A3CC 2WAQL 5IYCK 5IYCC 1BS2A 4P5AA 4A3DK 1K83A 2FQTA 1WIHA 3HKZL 4KMDA 2ZUEA 3S15K 4A3DC 3S15C 1EFWA 1Y1WA 2GSNA 1GE9A 3S14K 2JA8K 2JA8C 2Y0SL 1I6VA 3BP8C 3S1QK 1AB4A 3S1QC 5CJ9A 3GDZA 5IOTA 4Y52K 4Y52C 3H0GK 1O28A 3H0GC 2ZFZA 3FKIK 4QJVA 1JOEA 4LOWA 2R92K 2R92C 4QIWL 2JA6K 4GT9A 1L0WA 4BKWA 5CHPA 2GAHC 3SZZA 3S1RK 3RZOK 2NVTC 3RZOC 3H0GA 4C3IK 1WSVA 3GTJK 5C44K 1J6XA 5C44C 3GTJC 4GTEA 1XZQA 1RU0A 5JVOA 3L4JA 3H3VL 2JH3A 4KB4A 3A8JA 3EQLA 1BDFA 5M3FK 3GTJA 2XCRB 4YFNA 3FOFA 1PJ5A 1WCMK 1WCMC 2WB1L 4G0WA 1J6WA 5TMFA 1WQGA 3WODA 1WSRA 1USMA 1DD5A 1KQ4A 4ZH4A 3S17K 3S17C 3LAPA 3GTKK 1XPPA 3VA7A 1F93A 4A3LK 4A3LC 3BUEA 5IYDK 5IYDC 1IBAA 5IYBK 1G51A 5IYBC 1O24A 3DXJA 2E2JC 1TWGK 1TWGC 5IOQA 1ZBSA 2V6SA 3GEIA 4Q4ZA 2RH6A 3JSTA 3TFIA 3A8KA 1XZPB 4KARA 4KDDA 5IP7K 4GTAA 4C45A 5IP7C 1TWGA 3OPFA 4Y7NC 4LK0A 3HOWK 1IE0A 4GFQA 3LPXA 4P9SA 2P5MA 1YNNA 3S16K 4GTBA 4KASA 3IPJA 3AH5A 2JA7A 4YFKA 4A93K 2VUMK 4A93C 2R7ZA 4BLBA 1XXBA 4YG2A 4BBSC 4A3FC 3OEPA 5IOSA 4KB2A 5M5WK 3QX3A 2PA8D 2NVXK 5JFEA 3M4OK 1X31C 3M4OC 1K83K 4GTLA 3HOUC 1J6VA 1DCPA 1O29A 1Y1WK 2EBBA 3K7AK 4KAWX 5L46A 2E2IA 1DCOA 4GZYA 1F9NA 1VGXA 5TMCA 1WOSA 2PMZL 4C2MK 4C2MC 2XCOA 1XXCA 3S1MK 3S1MC 4FM9A 4A3GK 3HOZK 4A3GC 4A3EK 4XCHA 3HOZC 4A3EC 1I6HK 4WJ4A 1J98A 1I6HC 1IW7A 2PHCB 1VLOA 4OIQA 1VJEA 3N0BA 4NOIA 1ISEA 4X6AK 4X6AC 2NVTK 5IP9K 5IP9C 3AD7C 5HL8A 2O5IA 2A6EA 4MQ9A 1R9TK 3GTLA 1R9TC 3CAGA 4GTDA 1EQRA 4BLAA 3HOVK 3ERED 3HOVC 5M3MK 4J3NA 3CQZK 2A68A 3CQZC 1R9TA 4KATA 1HQMA 3N3YA 4AYBL 4JK1A 1YCLA 4XLPA 1Y1VK 1Y1VC 3CQZA 5EGHA 2WAQD 1IL2A 2E2JK 3HKZD 4C3HC 4RMFA 1Y1VA 3S0XA 2PPBA 4Q5SA 4KN7A 2YU9C 3PO3K 3PO3C 1O26A 2Y0SD 2JA7K 4MEXA 2NVYC 2JA7C 1O2AA 4Y7NK 5D4DA 3BP3A 1IS1A 2R7ZK 3T02A 2R7ZC 4G0UA 1YX2A 4OINA 2YU9A 4KMUA 1B4BA 3GTGK 1TWHC 3GTGC 4OIPA 3M3YK 3M3YC 2NVYA 1USOA 2B63K 2Y3PA 4G7ZA 2B63C 2RGRA 4KC6A 4KN4A 4BBRK 2NVQC 4KMAA 4BBRC 3LAJA 1VH2A 2R93C 4BBSK 4A3FK 1ZQ1C 3TTGA 4DDQA 1TWHA 4M1XA 3GTGA 3RZDK 2E2IK 3RZDC 2E2IC 1TWCK 1TWCC 1JVIA 2B63A 1TWFK 1TWFC 1O2FB 2BE5A 3HOUK 1PJ6A 3S1NK 2R93A 3S1NC 2V6UA 2V6TA 2WB1D 3G4AA 2FQOA 1C0AA 1TWCA 3PO2K 1UV7A 3PO2C 4A3IK 1TWFA 4A3IC 1F7VA 2E2HC 3GEHA 2A69A 2KWAA 4O2DA 3GTPA 1SFOC 4LK1A 1WOPA 2GAGC 5EGEA 3HOYK 4GTFA 3HOYC 4C3JC 4ILDA 1B4AA 5M5YK 1IQ0A 1TWAK 1TWAC 2E2HA 2GSOA 4BXXK 4P5BA 4BXXC 3T01A 1SFOA 4MEYA 1V5VA 3GTLK 3L4KA 4G0VA 3GTLC 4G7OA 3S2DK 3S2DC 1TWAA 4KM8A 1EI6A 4A3KK 4PAAA 4A3KC 3S14C 1PJ7A 3GIRA 1O25A 1O27A 4XSXA 5TJ3A 3TFJA 4WILA 3FKIC 3HOXK 3HOXC 1INNA 1BJTA 2CFAB 2JA6C 1HI9A 1O2BA 4XLNA 1WORA 4FZBA 3S1RC 3NUHA 1JQWA 4C3IC 3FKIA 4PABA 2R92A 3G4CA 2JA6A
chains in the Genus database with same CATH topology
1JQWA 4XCHA 1VJEA 1J98A 1IE0A 1JVIA 2FQTA 5E68A 1YCLA 1J6XA 1INNA 1J6WA 1VH2A 1JOEA 1J6VA 1VGXA 2FQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JQW A;  4XCH A;  1VJE A;  1J98 A;  1IE0 A;  1JVI A;  2FQT A;  5E68 A;  1YCL A;  1J6X A;  1INN A;  1J6W A;  1VH2 A;  1JOE A;  1J6V A;  1VGX A;  2FQO A; 
#chains in the Genus database with same CATH topology
 1ZYR A;  3GTM K;  3GTM C;  1DCH A;  5C4X K;  5C4X C;  2PA8 L;  3I4N K;  3I4N C;  1VRQ C;  3T00 A;  1EH1 A;  3FHZ A;  3AQO A;  3GTM A;  4C3H K;  2GSU A;  4LJZ A;  2PMZ D;  2YU9 K;  5FJ8 K;  3GTK C;  3ADA C;  2CFA A;  4LR2 A;  3Q3Q A;  1BGW A;  4BY1 K;  2NVY K;  4BY1 C;  1WCM A;  4XSZ A;  4OIR A;  1I50 K;  1I50 C;  2XCQ A;  4G7H A;  1ZVU A;  3V4G A;  1WQF A;  4A3B K;  4A3B C;  3AQP A;  3GTK A;  4QIW D;  4KM9 A;  1TWH K;  4WJ3 M;  5C4J K;  2P8T A;  1ZXO A;  5C4J C;  1I50 A;  5IOR A;  1F7U A;  2NVQ K;  2D6F C;  2R93 K;  3AD9 C;  1WQH A;  4OIO A;  3ORE A;  3GTQ K;  3GTQ C;  3H3V D;  3HOW C;  3FOE A;  1I3Q K;  3I4M K;  3I4M C;  1I3Q C;  2O5J A;  1WOO A;  3GEE A;  4AH6 A;  3MML B;  4LQY A;  3S16 C;  3TFH A;  3SZY A;  3N0C A;  5C3E K;  3GTP K;  5C3E C;  3GTP C;  3GTQ A;  2VUM C;  5FLM K;  5FLM C;  3S2H K;  3S2H C;  1I3Q A;  4AYB D;  3AD8 C;  3GTO K;  4KMH A;  1EK8 A;  3GTO C;  2E2H K;  4GTC A;  4A3M K;  4A3M C;  3A8I A;  3GSI A;  4QJV B;  2NVX C;  2JA5 K;  1SFO K;  2JA5 C;  2VUM A;  2CW0 A;  2A6H A;  4C3J K;  4LLG A;  1K83 C;  4BY7 K;  4BY7 C;  1XZP A;  4A3J K;  2ZUF A;  4A3J C;  4YFX A;  3GTO A;  1YNJ A;  5E68 A;  1Y1W C;  3K7A C;  2W7V A;  1XXA A;  3HXA A;  1SMY A;  5M5X K;  2NVX A;  4A3C K;  1XZQ B;  2JA5 A;  4A3C C;  2WAQ L;  5IYC K;  5IYC C;  1BS2 A;  4P5A A;  4A3D K;  1K83 A;  2FQT A;  1WIH A;  3HKZ L;  4KMD A;  2ZUE A;  3S15 K;  4A3D C;  3S15 C;  1EFW A;  1Y1W A;  2GSN A;  1GE9 A;  3S14 K;  2JA8 K;  2JA8 C;  2Y0S L;  1I6V A;  3BP8 C;  3S1Q K;  1AB4 A;  3S1Q C;  5CJ9 A;  3GDZ A;  5IOT A;  4Y52 K;  4Y52 C;  3H0G K;  1O28 A;  3H0G C;  2ZFZ A;  3FKI K;  4QJV A;  1JOE A;  4LOW A;  2R92 K;  2R92 C;  4QIW L;  2JA6 K;  4GT9 A;  1L0W A;  4BKW A;  5CHP A;  2GAH C;  3SZZ A;  3S1R K;  3RZO K;  2NVT C;  3RZO C;  3H0G A;  4C3I K;  1WSV A;  3GTJ K;  5C44 K;  1J6X A;  5C44 C;  3GTJ C;  4GTE A;  1XZQ A;  1RU0 A;  5JVO A;  3L4J A;  3H3V L;  2JH3 A;  4KB4 A;  3A8J A;  3EQL A;  1BDF A;  5M3F K;  3GTJ A;  2XCR B;  4YFN A;  3FOF A;  1PJ5 A;  1WCM K;  1WCM C;  2WB1 L;  4G0W A;  1J6W A;  5TMF A;  1WQG A;  3WOD A;  1WSR A;  1USM A;  1DD5 A;  1KQ4 A;  4ZH4 A;  3S17 K;  3S17 C;  3LAP A;  3GTK K;  1XPP A;  3VA7 A;  1F93 A;  4A3L K;  4A3L C;  3BUE A;  5IYD K;  5IYD C;  1IBA A;  5IYB K;  1G51 A;  5IYB C;  1O24 A;  3DXJ A;  2E2J C;  1TWG K;  1TWG C;  5IOQ A;  1ZBS A;  2V6S A;  3GEI A;  4Q4Z A;  2RH6 A;  3JST A;  3TFI A;  3A8K A;  1XZP B;  4KAR A;  4KDD A;  5IP7 K;  4GTA A;  4C45 A;  5IP7 C;  1TWG A;  3OPF A;  4Y7N C;  4LK0 A;  3HOW K;  1IE0 A;  4GFQ A;  3LPX A;  4P9S A;  2P5M A;  1YNN A;  3S16 K;  4GTB A;  4KAS A;  3IPJ A;  3AH5 A;  2JA7 A;  4YFK A;  4A93 K;  2VUM K;  4A93 C;  2R7Z A;  4BLB A;  1XXB A;  4YG2 A;  4BBS C;  4A3F C;  3OEP A;  5IOS A;  4KB2 A;  5M5W K;  3QX3 A;  2PA8 D;  2NVX K;  5JFE A;  3M4O K;  1X31 C;  3M4O C;  1K83 K;  4GTL A;  3HOU C;  1J6V A;  1DCP A;  1O29 A;  1Y1W K;  2EBB A;  3K7A K;  4KAW X;  5L46 A;  2E2I A;  1DCO A;  4GZY A;  1F9N A;  1VGX A;  5TMC A;  1WOS A;  2PMZ L;  4C2M K;  4C2M C;  2XCO A;  1XXC A;  3S1M K;  3S1M C;  4FM9 A;  4A3G K;  3HOZ K;  4A3G C;  4A3E K;  4XCH A;  3HOZ C;  4A3E C;  1I6H K;  4WJ4 A;  1J98 A;  1I6H C;  1IW7 A;  2PHC B;  1VLO A;  4OIQ A;  1VJE A;  3N0B A;  4NOI A;  1ISE A;  4X6A K;  4X6A C;  2NVT K;  5IP9 K;  5IP9 C;  3AD7 C;  5HL8 A;  2O5I A;  2A6E A;  4MQ9 A;  1R9T K;  3GTL A;  1R9T C;  3CAG A;  4GTD A;  1EQR A;  4BLA A;  3HOV K;  3ERE D;  3HOV C;  5M3M K;  4J3N A;  3CQZ K;  2A68 A;  3CQZ C;  1R9T A;  4KAT A;  1HQM A;  3N3Y A;  4AYB L;  4JK1 A;  1YCL A;  4XLP A;  1Y1V K;  1Y1V C;  3CQZ A;  5EGH A;  2WAQ D;  1IL2 A;  2E2J K;  3HKZ D;  4C3H C;  4RMF A;  1Y1V A;  3S0X A;  2PPB A;  4Q5S A;  4KN7 A;  2YU9 C;  3PO3 K;  3PO3 C;  1O26 A;  2Y0S D;  2JA7 K;  4MEX A;  2NVY C;  2JA7 C;  1O2A A;  4Y7N K;  5D4D A;  3BP3 A;  1IS1 A;  2R7Z K;  3T02 A;  2R7Z C;  4G0U A;  1YX2 A;  4OIN A;  2YU9 A;  4KMU A;  1B4B A;  3GTG K;  1TWH C;  3GTG C;  4OIP A;  3M3Y K;  3M3Y C;  2NVY A;  1USO A;  2B63 K;  2Y3P A;  4G7Z A;  2B63 C;  2RGR A;  4KC6 A;  4KN4 A;  4BBR K;  2NVQ C;  4KMA A;  4BBR C;  3LAJ A;  1VH2 A;  2R93 C;  4BBS K;  4A3F K;  1ZQ1 C;  3TTG A;  4DDQ A;  1TWH A;  4M1X A;  3GTG A;  3RZD K;  2E2I K;  3RZD C;  2E2I C;  1TWC K;  1TWC C;  1JVI A;  2B63 A;  1TWF K;  1TWF C;  1O2F B;  2BE5 A;  3HOU K;  1PJ6 A;  3S1N K;  2R93 A;  3S1N C;  2V6U A;  2V6T A;  2WB1 D;  3G4A A;  2FQO A;  1C0A A;  1TWC A;  3PO2 K;  1UV7 A;  3PO2 C;  4A3I K;  1TWF A;  4A3I C;  1F7V A;  2E2H C;  3GEH A;  2A69 A;  2KWA A;  4O2D A;  3GTP A;  1SFO C;  4LK1 A;  1WOP A;  2GAG C;  5EGE A;  3HOY K;  4GTF A;  3HOY C;  4C3J C;  4ILD A;  1B4A A;  5M5Y K;  1IQ0 A;  1TWA K;  1TWA C;  2E2H A;  2GSO A;  4BXX K;  4P5B A;  4BXX C;  3T01 A;  1SFO A;  4MEY A;  1V5V A;  3GTL K;  3L4K A;  4G0V A;  3GTL C;  4G7O A;  3S2D K;  3S2D C;  1TWA A;  4KM8 A;  1EI6 A;  4A3K K;  4PAA A;  4A3K C;  3S14 C;  1PJ7 A;  3GIR A;  1O25 A;  1O27 A;  4XSX A;  5TJ3 A;  3TFJ A;  4WIL A;  3FKI C;  3HOX K;  3HOX C;  1INN A;  1BJT A;  2CFA B;  2JA6 C;  1HI9 A;  1O2B A;  4XLN A;  1WOR A;  4FZB A;  3S1R C;  3NUH A;  1JQW A;  4C3I C;  3FKI A;  4PAB A;  2R92 A;  3G4C A;  2JA6 A; 
#chains in the Genus database with same CATH homology
 1JQW A;  4XCH A;  1VJE A;  1J98 A;  1IE0 A;  1JVI A;  2FQT A;  5E68 A;  1YCL A;  1J6X A;  1INN A;  1J6W A;  1VH2 A;  1JOE A;  1J6V A;  1VGX A;  2FQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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