1J72A

Crystal structure of mutant macrophage capping protein (cap g) with actin-severing activity in the ca2+-free form
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
337
structure length
337
Chain Sequence
PFPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFKDWK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Macrophage capping protein
publication title Crystal Structure of Mutant Human Macrophage Capping Protein
rcsb
source organism Homo sapiens
total genus 83
structure length 337
sequence length 337
ec nomenclature
pdb deposition date 2001-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1j72A02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1j72A03
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1j72A01
4S10C 2FF6G 3Q2BA 2FH1A 1YAGG 1NM1G 1NMDG 2D8BA 3FG6A 3CJBG 1RGIG 3FFKA 5KYUA 1D4XG 5KYXB 5KYYA 1SVRA 4CBUG 3EGXB 2XF1A 1J72A 1C0GS 1UDMA 1SVQA 4KEDA 2FH2A 5L6WC 1DEJS 3A5MS 3EH1A 4KEFA 1M2OA 3EG9A 2FGHA 2LJ8A 1EQYS 2VILA 1P8ZG 1P8XA 4LIZA 2MV2A 5FAFA 1D0NA 1X67A 1AK7A 1JHWA 1HQZ1 1AHQA 5KYXA 3A5LS 3CIPG 3EGXA 2MOTA 2LLFA 1CNUA 2FH3A 4PKGG 1VFQA 2FH4A 1PCXA 1PD0A 4CBWG 3A5NS 1YVNG 2XFAA 3L50A 4PKHB 2MP4A 1T2LA 2W0IA 2L72A 4PKIG 5A1MA 1C0FS 1Q8GA 1M4JA 1MDUA 3A5OS 1T44G 1VKKA 5KYWB 5HVKB 5FAEA 1TMWA 2QTVA 3CJCG 1TVJA 1H1VG 3CI5G 2NUPB 1KCQA 2VACA 1V6FA 1ESVS 1T3YA 3EFOB 4CBXG 1WM4A 1QPVA 1WFSA 3EGDB 1M2VA 1WNJA 1F7SA 4BEX1 1NPHA 5KYNA 1PD1A 1M2VB 5DD2A 2I2QA 1AK6A 3FG7A 5IVUA 5KYUB 5KYWA 2VIKA 2KVKA 1SVYA 3TU5B 5KYYB 3FFNA 2NUPA 2NUTA 4KEEA 5HVKD 4JD2H 1Q8XA 1COFA 1T3XA 4Z94G 3EFOA 2NUTB 3EH2A 2FF3A 3DAWB 3EGDA 1CFYA 3EG9B 2HD7A 2LXXA 1NLVG
chains in the Genus database with same CATH superfamily
4S10C 2FF6G 3Q2BA 2FH1A 1YAGG 1NM1G 1NMDG 2D8BA 3FG6A 3CJBG 1RGIG 3FFKA 5KYUA 1D4XG 5KYXB 5KYYA 1SVRA 4CBUG 3EGXB 2XF1A 1J72A 1C0GS 1UDMA 1SVQA 4KEDA 2FH2A 5L6WC 1DEJS 3A5MS 3EH1A 4KEFA 1M2OA 3EG9A 2FGHA 2LJ8A 1EQYS 2VILA 1P8ZG 1P8XA 4LIZA 2MV2A 5FAFA 1D0NA 1X67A 1AK7A 1JHWA 1HQZ1 1AHQA 5KYXA 3A5LS 3CIPG 3EGXA 2MOTA 2LLFA 1CNUA 2FH3A 4PKGG 1VFQA 2FH4A 1PCXA 1PD0A 4CBWG 3A5NS 1YVNG 2XFAA 3L50A 4PKHB 2MP4A 1T2LA 2W0IA 2L72A 4PKIG 5A1MA 1C0FS 1Q8GA 1M4JA 1MDUA 3A5OS 1T44G 1VKKA 5KYWB 5HVKB 5FAEA 1TMWA 2QTVA 3CJCG 1TVJA 1H1VG 3CI5G 2NUPB 1KCQA 2VACA 1V6FA 1ESVS 1T3YA 3EFOB 4CBXG 1WM4A 1QPVA 1WFSA 3EGDB 1M2VA 1WNJA 1F7SA 4BEX1 1NPHA 5KYNA 1PD1A 1M2VB 5DD2A 2I2QA 1AK6A 3FG7A 5IVUA 5KYUB 5KYWA 2VIKA 2KVKA 3DA7A 1SVYA 3TU5B 5KYYB 3FFNA 2NUPA 2NUTA 4KEEA 5HVKD 4JD2H 1Q8XA 1COFA 1T3XA 4Z94G 3EFOA 2NUTB 3EH2A 2FF3A 3DAWB 3EGDA 1CFYA 3EG9B 2HD7A 2LXXA 1NLVG
chains in the Genus database with same CATH topology
4S10C 2FF6G 3Q2BA 2FH1A 1YAGG 1NM1G 1NMDG 2D8BA 3FG6A 3CJBG 1RGIG 3FFKA 5KYUA 1D4XG 5KYXB 5KYYA 1SVRA 4CBUG 3EGXB 2XF1A 1J72A 1C0GS 1UDMA 1SVQA 4KEDA 2FH2A 5L6WC 1DEJS 3A5MS 3EH1A 4KEFA 1M2OA 3EG9A 2FGHA 2LJ8A 1EQYS 2VILA 1P8ZG 1P8XA 4LIZA 2MV2A 5FAFA 1D0NA 1X67A 1AK7A 1JHWA 1HQZ1 1AHQA 5KYXA 3A5LS 3CIPG 3EGXA 2MOTA 2LLFA 1CNUA 2FH3A 4PKGG 1VFQA 2FH4A 1PCXA 1PD0A 4CBWG 3A5NS 1YVNG 2XFAA 3L50A 4PKHB 2MP4A 1T2LA 2W0IA 2L72A 4PKIG 5A1MA 1C0FS 1Q8GA 1M4JA 1MDUA 3A5OS 1T44G 1VKKA 5KYWB 5HVKB 5FAEA 1TMWA 2QTVA 3CJCG 1TVJA 1H1VG 3CI5G 2NUPB 1KCQA 2VACA 1V6FA 1ESVS 1T3YA 3EFOB 4CBXG 1WM4A 1QPVA 1WFSA 3EGDB 1M2VA 1WNJA 1F7SA 4BEX1 1NPHA 5KYNA 1PD1A 1M2VB 5DD2A 2I2QA 1AK6A 3FG7A 5IVUA 5KYUB 5KYWA 2VIKA 2KVKA 3DA7A 1SVYA 3TU5B 5KYYB 3FFNA 2NUPA 2NUTA 4KEEA 5HVKD 4JD2H 1Q8XA 1COFA 1T3XA 4Z94G 3EFOA 2NUTB 3EH2A 2FF3A 3DAWB 3EGDA 1CFYA 3EG9B 2HD7A 2LXXA 1NLVG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S10 C;  2FF6 G;  3Q2B A;  2FH1 A;  1YAG G;  1NM1 G;  1NMD G;  2D8B A;  3FG6 A;  3CJB G;  1RGI G;  3FFK A;  5KYU A;  1D4X G;  5KYX B;  5KYY A;  1SVR A;  4CBU G;  3EGX B;  2XF1 A;  1J72 A;  1C0G S;  1UDM A;  1SVQ A;  4KED A;  2FH2 A;  5L6W C;  1DEJ S;  3A5M S;  3EH1 A;  4KEF A;  1M2O A;  3EG9 A;  2FGH A;  2LJ8 A;  1EQY S;  2VIL A;  1P8Z G;  1P8X A;  4LIZ A;  2MV2 A;  5FAF A;  1D0N A;  1X67 A;  1AK7 A;  1JHW A;  1HQZ 1;  1AHQ A;  5KYX A;  3A5L S;  3CIP G;  3EGX A;  2MOT A;  2LLF A;  1CNU A;  2FH3 A;  4PKG G;  1VFQ A;  2FH4 A;  1PCX A;  1PD0 A;  4CBW G;  3A5N S;  1YVN G;  2XFA A;  3L50 A;  4PKH B;  2MP4 A;  1T2L A;  2W0I A;  2L72 A;  4PKI G;  5A1M A;  1C0F S;  1Q8G A;  1M4J A;  1MDU A;  3A5O S;  1T44 G;  1VKK A;  5KYW B;  5HVK B;  5FAE A;  1TMW A;  2QTV A;  3CJC G;  1TVJ A;  1H1V G;  3CI5 G;  2NUP B;  1KCQ A;  2VAC A;  1V6F A;  1ESV S;  1T3Y A;  3EFO B;  4CBX G;  1WM4 A;  1QPV A;  1WFS A;  3EGD B;  1M2V A;  1WNJ A;  1F7S A;  4BEX 1;  1NPH A;  5KYN A;  1PD1 A;  1M2V B;  5DD2 A;  2I2Q A;  1AK6 A;  3FG7 A;  5IVU A;  5KYU B;  5KYW A;  2VIK A;  2KVK A;  1SVY A;  3TU5 B;  5KYY B;  3FFN A;  2NUP A;  2NUT A;  4KEE A;  5HVK D;  4JD2 H;  1Q8X A;  1COF A;  1T3X A;  4Z94 G;  3EFO A;  2NUT B;  3EH2 A;  2FF3 A;  3DAW B;  3EGD A;  1CFY A;  3EG9 B;  2HD7 A;  2LXX A;  1NLV G; 
#chains in the Genus database with same CATH topology
 4S10 C;  2FF6 G;  3Q2B A;  2FH1 A;  1YAG G;  1NM1 G;  1NMD G;  2D8B A;  3FG6 A;  3CJB G;  1RGI G;  3FFK A;  5KYU A;  1D4X G;  5KYX B;  5KYY A;  1SVR A;  4CBU G;  3EGX B;  2XF1 A;  1J72 A;  1C0G S;  1UDM A;  1SVQ A;  4KED A;  2FH2 A;  5L6W C;  1DEJ S;  3A5M S;  3EH1 A;  4KEF A;  1M2O A;  3EG9 A;  2FGH A;  2LJ8 A;  1EQY S;  2VIL A;  1P8Z G;  1P8X A;  4LIZ A;  2MV2 A;  5FAF A;  1D0N A;  1X67 A;  1AK7 A;  1JHW A;  1HQZ 1;  1AHQ A;  5KYX A;  3A5L S;  3CIP G;  3EGX A;  2MOT A;  2LLF A;  1CNU A;  2FH3 A;  4PKG G;  1VFQ A;  2FH4 A;  1PCX A;  1PD0 A;  4CBW G;  3A5N S;  1YVN G;  2XFA A;  3L50 A;  4PKH B;  2MP4 A;  1T2L A;  2W0I A;  2L72 A;  4PKI G;  5A1M A;  1C0F S;  1Q8G A;  1M4J A;  1MDU A;  3A5O S;  1T44 G;  1VKK A;  5KYW B;  5HVK B;  5FAE A;  1TMW A;  2QTV A;  3CJC G;  1TVJ A;  1H1V G;  3CI5 G;  2NUP B;  1KCQ A;  2VAC A;  1V6F A;  1ESV S;  1T3Y A;  3EFO B;  4CBX G;  1WM4 A;  1QPV A;  1WFS A;  3EGD B;  1M2V A;  1WNJ A;  1F7S A;  4BEX 1;  1NPH A;  5KYN A;  1PD1 A;  1M2V B;  5DD2 A;  2I2Q A;  1AK6 A;  3FG7 A;  5IVU A;  5KYU B;  5KYW A;  2VIK A;  2KVK A;  3DA7 A;  1SVY A;  3TU5 B;  5KYY B;  3FFN A;  2NUP A;  2NUT A;  4KEE A;  5HVK D;  4JD2 H;  1Q8X A;  1COF A;  1T3X A;  4Z94 G;  3EFO A;  2NUT B;  3EH2 A;  2FF3 A;  3DAW B;  3EGD A;  1CFY A;  3EG9 B;  2HD7 A;  2LXX A;  1NLV G; 
#chains in the Genus database with same CATH homology
 4S10 C;  2FF6 G;  3Q2B A;  2FH1 A;  1YAG G;  1NM1 G;  1NMD G;  2D8B A;  3FG6 A;  3CJB G;  1RGI G;  3FFK A;  5KYU A;  1D4X G;  5KYX B;  5KYY A;  1SVR A;  4CBU G;  3EGX B;  2XF1 A;  1J72 A;  1C0G S;  1UDM A;  1SVQ A;  4KED A;  2FH2 A;  5L6W C;  1DEJ S;  3A5M S;  3EH1 A;  4KEF A;  1M2O A;  3EG9 A;  2FGH A;  2LJ8 A;  1EQY S;  2VIL A;  1P8Z G;  1P8X A;  4LIZ A;  2MV2 A;  5FAF A;  1D0N A;  1X67 A;  1AK7 A;  1JHW A;  1HQZ 1;  1AHQ A;  5KYX A;  3A5L S;  3CIP G;  3EGX A;  2MOT A;  2LLF A;  1CNU A;  2FH3 A;  4PKG G;  1VFQ A;  2FH4 A;  1PCX A;  1PD0 A;  4CBW G;  3A5N S;  1YVN G;  2XFA A;  3L50 A;  4PKH B;  2MP4 A;  1T2L A;  2W0I A;  2L72 A;  4PKI G;  5A1M A;  1C0F S;  1Q8G A;  1M4J A;  1MDU A;  3A5O S;  1T44 G;  1VKK A;  5KYW B;  5HVK B;  5FAE A;  1TMW A;  2QTV A;  3CJC G;  1TVJ A;  1H1V G;  3CI5 G;  2NUP B;  1KCQ A;  2VAC A;  1V6F A;  1ESV S;  1T3Y A;  3EFO B;  4CBX G;  1WM4 A;  1QPV A;  1WFS A;  3EGD B;  1M2V A;  1WNJ A;  1F7S A;  4BEX 1;  1NPH A;  5KYN A;  1PD1 A;  1M2V B;  5DD2 A;  2I2Q A;  1AK6 A;  3FG7 A;  5IVU A;  5KYU B;  5KYW A;  2VIK A;  2KVK A;  3DA7 A;  1SVY A;  3TU5 B;  5KYY B;  3FFN A;  2NUP A;  2NUT A;  4KEE A;  5HVK D;  4JD2 H;  1Q8X A;  1COF A;  1T3X A;  4Z94 G;  3EFO A;  2NUT B;  3EH2 A;  2FF3 A;  3DAW B;  3EGD A;  1CFY A;  3EG9 B;  2HD7 A;  2LXX A;  1NLV G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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