1JJ2O

Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
143
structure length
143
Chain Sequence
TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The kink-turn: a new RNA secondary structure motif.
pubmed doi rcsb
total genus 47
structure length 143
sequence length 143
ec nomenclature
pdb deposition date 2001-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01280 Ribosomal_L19e Ribosomal protein L19e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.60 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1jj2O02
1.10.1650.10 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 1jj2O01
3I56P 3CCUP 1QVFO 1KD1Q 3CCEP 1N8RQ 3I55P 1YJWP 1M1KQ 3CCMP 1VQKP 1Q81Q 2QA4P 3CC2P 3CMAP 1KQSO 1M90Q 1VQPP 1VQLP 1JJ2O 1VQ4P 1K8AQ 1YHQP 1YIJP 1W2BO 1QVGO 3G4SP 3CXCO 3G71P 1Q7YQ 1K9MQ 3CCVP 3CCSP 3CD6P 1K73Q 3CCRP 1VQMP 1VQ7P 3CPWO 2QEXP 3CCLP 2OTLP 1YJ9P 1S72P 1NJIQ 1VQ6P 1VQNP 3CMEP 3G6EP 1VQOP 1YJNP 1YITP 3CCJP 3OW2O 1KC8Q 2OTJP 1Q86Q 1Q82Q 3CC4P 1VQ5P 1VQ8P 3CC7P 1VQ9P 1YI2P 3CCQP
chains in the Genus database with same CATH superfamily
1F80D 5I4TG 1EIAA 1EMVA 1JJ2O 2XZ0D 3VRLC 5EW5E 1YIJP 1QVGO 3CMEP 1FR2A 1Q82Q 3EJBA 2AVAA 4R0MA 3Q20A 2AF8A 2VLPA 3CCEP 3CCMP 4U0FA 1CEIA 1M90Q 1UNKA 2FQ1A 2XV6A 2KG8A 3EJEA 1W2BO 2LPKA 5KP7B 2GZJA 1IMQA 2FACA 4H2WC 3CCRP 2GZGA 3G26A 2VSQA 2MD9A 2JQ4A 2LL8A 2JB0A 2PY8A 3OW2O 3G1IA 2Z44A 4DG9A 2KOSA 2PEIA 2KW2A 1K30A 5DCKA 2EHTA 1AF8A 2CGQA 1VQ4P 1PEQA 3G28A 4XFYA 3CCVP 4QKOA 4IZ6A 1PEMA 4BPGA 4XROA 1A8OA 2MY5A 2DGYA 1K9MQ 4XFZA 2GDXA 1M1KQ 3NY7B 2VLOA 2KODA 1QRJA 5F2KA 2MVUA 2FVFA 2PENA 2K2QA 2BUOA 1PEUA 2JU2A 1Z6MA 1ZNVA 2CNRA 1VQ8P 2OARA 2FVAA 5HV8A 2K0DX 4F37A 1VQKP 2K0YA 2QA4P 2X2BA 5KP6B 3U43A 3CPWO 1VQ6P 1AYIA 2OTJP 1VQ5P 2JGPA 3G21A 1VQ9P 2K0XA 2LTEA 5HVCA 2Z46A 4IPYA 2N6YA 1UJZA 1DNYA 2XT1A 2KR5A 1AUMA 1RNIA 1M6EX 2MR8A 3H47A 2MF4A 2N50A 1VQNP 3G6EP 2L0QA 2JU1A 1M6NA 1GXGA 2CG5B 2KOOA 1KQSO 2GYKA 1PEOA 4U0EA 1EOQA 3CXCO 2M8LA 2QEXP 1A43A 1DV5A 3B4QA 3M1MA 2LOLA 1VQOP 1KC8Q 2L9FA 2PNGA 1GPJA 3CCQP 3DS0A 2K94A 2K93A 7CEIA 1MZ8A 5HGLA 3DS3A 2KWLA 2KGAA 2GZEA 5KP8B 2PEMA 5CZDB 3HYBA 4U0CA 2LKIA 3GJNA 4NEOA 2KORA 1L0IA 1T8KA 1YI2P 1YJ9P 3E2DA 2JBGA 2M8PA 2VLQA 3GKLC 1YJWP 2LMLA 3CC2P 1IUQA 2AFDA 3RG6C 5EJDA 3MGEA 3GZMA 3CCLP 2LF4A 1S72P 1NJIQ 1E0HA 1YJNP 1YITP 1BXIA 5BS2A 1HY8A 5F2NA 2FADA 2KOPA 1QVFO 3I55P 3G1GA 1VQPP 3DPHA 3DTJA 1VQMP 2MR7A 1ZMBA 3CCJP 2KG9A 3CC4P 2N98A 4GR2A 2L22A 1KD1Q 1VHNA 2GZFA 2ROQA 3CMAP 2KGDA 3H4EA 1RO2A 4BPFA 2BQ1E 2P9XA 2XXMA 2L4BA 1X3OA 4WYMA 2FAEA 3B5IA 1ACPA 2EIAA 2NO8A 2JYLA 4GR6A 2EHSA 2LIUA 3NTEA 2BHVA 2MVVA 3G71P 1Q7YQ 5HGNA 4PH1A 3CCSP 1HQBA 5F2OA 3GZLA 4BPHA 4HKGA 2OTLP 3HZQA 2M5RA 3DS1A 3DS5A 3CC7P 1GXHA 3CCUP 1D1DA 3WBHA 2GDYA 3RG2A 3G0VA 2E1MA 2FVEA 2KGCA 4XRQA 2PEKA 2L6EA 2JAZA 2N5IA 1OR5A 2KOQA 2N5HA 1Q86Q 4U0DA 4CA3A 2DNWA 4XFXA 1BAJA 5JPAA 1N8RQ 2EFJA 2KG6A 4U0BA 4UHPB 1VQLP 2CWOA 2Z45A 3CD6P 1E6JP 2FHSC 2ERHA 1VKUA 2PEQA 2LIWA 4MRTC 4COPA 4QNBA 2KGEA 1NQ4A 2CQ8A 2M8NA 3DS4A 2K5XA 3G29A 4PH0A 2AFEA 1K8AQ 2WPTA 3G4SP 1RO0A 4PWVB 3LRYA 3LMOA 4H2YC 1IMPA 4U0AA 2GZIA 2FQ2A 2GDWA 2JYGA 2K92A 2QNWA 3I56P 2EG5A 4PXHB 3CE7A 2VLNA 1Q81Q 1M74A 2FQ0A 3P05A 1YHQP 4COCA 2PEJA 2ONTA 3DS2A 3EJDA 1K73Q 1VQ7P 4H2XC 2PEOA 2XZ1C 2JO0A 2N6ZA 5HGMA 4M0IA 3H0DA 5BS1A 5HGOA 1L0HA 1KLPA
chains in the Genus database with same CATH topology
3CCUP 3E2DA 1D1DA 3WBHA 2M8PA 5I4TG 1YJWP 1EIAA 1VQKP 2QA4P 3CC2P 1IUQA 1JJ2O 3G0VA 2E1MA 3VRLC 1YIJP 1QVGO 3RG6C 4XRQA 2PEKA 3MGEA 2L6EA 3CPWO 3CCLP 2LF4A 1S72P 1NJIQ 1VQ6P 3CMEP 1YJNP 1YITP 2OTJP 5BS2A 1Q86Q 1Q82Q 5F2NA 4U0DA 1VQ5P 3G21A 1VQ9P 1QVFO 3Q20A 4XFXA 1BAJA 5JPAA 1N8RQ 3CCEP 2Z46A 4IPYA 3I55P 3CCMP 4U0FA 3G1GA 2EFJA 4U0BA 1M90Q 1VQPP 1VQLP 2XT1A 1AUMA 3DPHA 2CWOA 2XV6A 1W2BO 1RNIA 3DTJA 2Z45A 3CD6P 1E6JP 3CCRP 1VQMP 1M6EX 3H47A 3G26A 2PEQA 4COPA 1VQNP 1ZMBA 3G6EP 4QNBA 2PY8A 3CCJP 3OW2O 3G1IA 3CC4P 2Z44A 4GR2A 1M6NA 2M8NA 2PEIA 1KD1Q 3DS4A 3G29A 1K30A 4PH0A 5DCKA 3CMAP 1KQSO 3H4EA 1RO2A 1VQ4P 1K8AQ 1PEQA 1PEOA 4U0EA 3G28A 3G4SP 4XFYA 1RO0A 1EOQA 3CXCO 3CCVP 3LRYA 2M8LA 1PEMA 2BQ1E 2QEXP 1A43A 2P9XA 4U0AA 3M1MA 2XXMA 4XROA 1VQOP 1KC8Q 1A8OA 2JYGA 2DGYA 4WYMA 1K9MQ 3CCQP 3B5IA 3I56P 2EG5A 4XFZA 2EIAA 3DS0A 1M1KQ 1Q81Q 2JYLA 1M74A 4GR6A 5HGLA 2KODA 3DS3A 3P05A 3NTEA 2BHVA 1YHQP 1QRJA 5F2KA 4COCA 3G71P 1Q7YQ 5HGNA 2PEJA 4PH1A 2PEMA 2ONTA 3DS2A 3CCSP 5F2OA 2PENA 1K73Q 1VQ7P 2BUOA 1PEUA 3HYBA 4U0CA 2OTLP 3HZQA 3DS1A 2PEOA 2JO0A 5HGMA 3DS5A 4M0IA 3H0DA 5BS1A 1VQ8P 3CC7P 5HGOA 2OARA 1YI2P 1YJ9P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I56 P;  3CCU P;  1QVF O;  1KD1 Q;  3CCE P;  1N8R Q;  3I55 P;  1YJW P;  1M1K Q;  3CCM P;  1VQK P;  1Q81 Q;  2QA4 P;  3CC2 P;  3CMA P;  1KQS O;  1M90 Q;  1VQP P;  1VQL P;  1JJ2 O;  1VQ4 P;  1K8A Q;  1YHQ P;  1YIJ P;  1W2B O;  1QVG O;  3G4S P;  3CXC O;  3G71 P;  1Q7Y Q;  1K9M Q;  3CCV P;  3CCS P;  3CD6 P;  1K73 Q;  3CCR P;  1VQM P;  1VQ7 P;  3CPW O;  2QEX P;  3CCL P;  2OTL P;  1YJ9 P;  1S72 P;  1NJI Q;  1VQ6 P;  1VQN P;  3CME P;  3G6E P;  1VQO P;  1YJN P;  1YIT P;  3CCJ P;  3OW2 O;  1KC8 Q;  2OTJ P;  1Q86 Q;  1Q82 Q;  3CC4 P;  1VQ5 P;  1VQ8 P;  3CC7 P;  1VQ9 P;  1YI2 P;  3CCQ P; 
#chains in the Genus database with same CATH topology
 1F80 D;  5I4T G;  1EIA A;  1EMV A;  1JJ2 O;  2XZ0 D;  3VRL C;  5EW5 E;  1YIJ P;  1QVG O;  3CME P;  1FR2 A;  1Q82 Q;  3EJB A;  2AVA A;  4R0M A;  3Q20 A;  2AF8 A;  2VLP A;  3CCE P;  3CCM P;  4U0F A;  1CEI A;  1M90 Q;  1UNK A;  2FQ1 A;  2XV6 A;  2KG8 A;  3EJE A;  1W2B O;  2LPK A;  5KP7 B;  2GZJ A;  1IMQ A;  2FAC A;  4H2W C;  3CCR P;  2GZG A;  3G26 A;  2VSQ A;  2MD9 A;  2JQ4 A;  2LL8 A;  2JB0 A;  2PY8 A;  3OW2 O;  3G1I A;  2Z44 A;  4DG9 A;  2KOS A;  2PEI A;  2KW2 A;  1K30 A;  5DCK A;  2EHT A;  1AF8 A;  2CGQ A;  1VQ4 P;  1PEQ A;  3G28 A;  4XFY A;  3CCV P;  4QKO A;  4IZ6 A;  1PEM A;  4BPG A;  4XRO A;  1A8O A;  2MY5 A;  2DGY A;  1K9M Q;  4XFZ A;  2GDX A;  1M1K Q;  3NY7 B;  2VLO A;  2KOD A;  1QRJ A;  5F2K A;  2MVU A;  2FVF A;  2PEN A;  2K2Q A;  2BUO A;  1PEU A;  2JU2 A;  1Z6M A;  1ZNV A;  2CNR A;  1VQ8 P;  2OAR A;  2FVA A;  5HV8 A;  2K0D X;  4F37 A;  1VQK P;  2K0Y A;  2QA4 P;  2X2B A;  5KP6 B;  3U43 A;  3CPW O;  1VQ6 P;  1AYI A;  2OTJ P;  1VQ5 P;  2JGP A;  3G21 A;  1VQ9 P;  2K0X A;  2LTE A;  5HVC A;  2Z46 A;  4IPY A;  2N6Y A;  1UJZ A;  1DNY A;  2XT1 A;  2KR5 A;  1AUM A;  1RNI A;  1M6E X;  2MR8 A;  3H47 A;  2MF4 A;  2N50 A;  1VQN P;  3G6E P;  2L0Q A;  2JU1 A;  1M6N A;  1GXG A;  2CG5 B;  2KOO A;  1KQS O;  2GYK A;  1PEO A;  4U0E A;  1EOQ A;  3CXC O;  2M8L A;  2QEX P;  1A43 A;  1DV5 A;  3B4Q A;  3M1M A;  2LOL A;  1VQO P;  1KC8 Q;  2L9F A;  2PNG A;  1GPJ A;  3CCQ P;  3DS0 A;  2K94 A;  2K93 A;  7CEI A;  1MZ8 A;  5HGL A;  3DS3 A;  2KWL A;  2KGA A;  2GZE A;  5KP8 B;  2PEM A;  5CZD B;  3HYB A;  4U0C A;  2LKI A;  3GJN A;  4NEO A;  2KOR A;  1L0I A;  1T8K A;  1YI2 P;  1YJ9 P;  3E2D A;  2JBG A;  2M8P A;  2VLQ A;  3GKL C;  1YJW P;  2LML A;  3CC2 P;  1IUQ A;  2AFD A;  3RG6 C;  5EJD A;  3MGE A;  3GZM A;  3CCL P;  2LF4 A;  1S72 P;  1NJI Q;  1E0H A;  1YJN P;  1YIT P;  1BXI A;  5BS2 A;  1HY8 A;  5F2N A;  2FAD A;  2KOP A;  1QVF O;  3I55 P;  3G1G A;  1VQP P;  3DPH A;  3DTJ A;  1VQM P;  2MR7 A;  1ZMB A;  3CCJ P;  2KG9 A;  3CC4 P;  2N98 A;  4GR2 A;  2L22 A;  1KD1 Q;  1VHN A;  2GZF A;  2ROQ A;  3CMA P;  2KGD A;  3H4E A;  1RO2 A;  4BPF A;  2BQ1 E;  2P9X A;  2XXM A;  2L4B A;  1X3O A;  4WYM A;  2FAE A;  3B5I A;  1ACP A;  2EIA A;  2NO8 A;  2JYL A;  4GR6 A;  2EHS A;  2LIU A;  3NTE A;  2BHV A;  2MVV A;  3G71 P;  1Q7Y Q;  5HGN A;  4PH1 A;  3CCS P;  1HQB A;  5F2O A;  3GZL A;  4BPH A;  4HKG A;  2OTL P;  3HZQ A;  2M5R A;  3DS1 A;  3DS5 A;  3CC7 P;  1GXH A;  3CCU P;  1D1D A;  3WBH A;  2GDY A;  3RG2 A;  3G0V A;  2E1M A;  2FVE A;  2KGC A;  4XRQ A;  2PEK A;  2L6E A;  2JAZ A;  2N5I A;  1OR5 A;  2KOQ A;  2N5H A;  1Q86 Q;  4U0D A;  4CA3 A;  2DNW A;  4XFX A;  1BAJ A;  5JPA A;  1N8R Q;  2EFJ A;  2KG6 A;  4U0B A;  4UHP B;  1VQL P;  2CWO A;  2Z45 A;  3CD6 P;  1E6J P;  2FHS C;  2ERH A;  1VKU A;  2PEQ A;  2LIW A;  4MRT C;  4COP A;  4QNB A;  2KGE A;  1NQ4 A;  2CQ8 A;  2M8N A;  3DS4 A;  2K5X A;  3G29 A;  4PH0 A;  2AFE A;  1K8A Q;  2WPT A;  3G4S P;  1RO0 A;  4PWV B;  3LRY A;  3LMO A;  4H2Y C;  1IMP A;  4U0A A;  2GZI A;  2FQ2 A;  2GDW A;  2JYG A;  2K92 A;  2QNW A;  3I56 P;  2EG5 A;  4PXH B;  3CE7 A;  2VLN A;  1Q81 Q;  1M74 A;  2FQ0 A;  3P05 A;  1YHQ P;  4COC A;  2PEJ A;  2ONT A;  3DS2 A;  3EJD A;  1K73 Q;  1VQ7 P;  4H2X C;  2PEO A;  2XZ1 C;  2JO0 A;  2N6Z A;  5HGM A;  4M0I A;  3H0D A;  5BS1 A;  5HGO A;  1L0H A;  1KLP A; 
#chains in the Genus database with same CATH homology
 3CCU P;  3E2D A;  1D1D A;  3WBH A;  2M8P A;  5I4T G;  1YJW P;  1EIA A;  1VQK P;  2QA4 P;  3CC2 P;  1IUQ A;  1JJ2 O;  3G0V A;  2E1M A;  3VRL C;  1YIJ P;  1QVG O;  3RG6 C;  4XRQ A;  2PEK A;  3MGE A;  2L6E A;  3CPW O;  3CCL P;  2LF4 A;  1S72 P;  1NJI Q;  1VQ6 P;  3CME P;  1YJN P;  1YIT P;  2OTJ P;  5BS2 A;  1Q86 Q;  1Q82 Q;  5F2N A;  4U0D A;  1VQ5 P;  3G21 A;  1VQ9 P;  1QVF O;  3Q20 A;  4XFX A;  1BAJ A;  5JPA A;  1N8R Q;  3CCE P;  2Z46 A;  4IPY A;  3I55 P;  3CCM P;  4U0F A;  3G1G A;  2EFJ A;  4U0B A;  1M90 Q;  1VQP P;  1VQL P;  2XT1 A;  1AUM A;  3DPH A;  2CWO A;  2XV6 A;  1W2B O;  1RNI A;  3DTJ A;  2Z45 A;  3CD6 P;  1E6J P;  3CCR P;  1VQM P;  1M6E X;  3H47 A;  3G26 A;  2PEQ A;  4COP A;  1VQN P;  1ZMB A;  3G6E P;  4QNB A;  2PY8 A;  3CCJ P;  3OW2 O;  3G1I A;  3CC4 P;  2Z44 A;  4GR2 A;  1M6N A;  2M8N A;  2PEI A;  1KD1 Q;  3DS4 A;  3G29 A;  1K30 A;  4PH0 A;  5DCK A;  3CMA P;  1KQS O;  3H4E A;  1RO2 A;  1VQ4 P;  1K8A Q;  1PEQ A;  1PEO A;  4U0E A;  3G28 A;  3G4S P;  4XFY A;  1RO0 A;  1EOQ A;  3CXC O;  3CCV P;  3LRY A;  2M8L A;  1PEM A;  2BQ1 E;  2QEX P;  1A43 A;  2P9X A;  4U0A A;  3M1M A;  2XXM A;  4XRO A;  1VQO P;  1KC8 Q;  1A8O A;  2JYG A;  2DGY A;  4WYM A;  1K9M Q;  3CCQ P;  3B5I A;  3I56 P;  2EG5 A;  4XFZ A;  2EIA A;  3DS0 A;  1M1K Q;  1Q81 Q;  2JYL A;  1M74 A;  4GR6 A;  5HGL A;  2KOD A;  3DS3 A;  3P05 A;  3NTE A;  2BHV A;  1YHQ P;  1QRJ A;  5F2K A;  4COC A;  3G71 P;  1Q7Y Q;  5HGN A;  2PEJ A;  4PH1 A;  2PEM A;  2ONT A;  3DS2 A;  3CCS P;  5F2O A;  2PEN A;  1K73 Q;  1VQ7 P;  2BUO A;  1PEU A;  3HYB A;  4U0C A;  2OTL P;  3HZQ A;  3DS1 A;  2PEO A;  2JO0 A;  5HGM A;  3DS5 A;  4M0I A;  3H0D A;  5BS1 A;  1VQ8 P;  3CC7 P;  5HGO A;  2OAR A;  1YI2 P;  1YJ9 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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