1K7HA

Crystal structure of shrimp alkaline phosphatase
Total Genus 188
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
Knots found
sequence length
476
structure length
476
Chain Sequence
EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ALKALINE PHOSPHATASE
publication title The 1.9 A Crystal Structure of Heat-Labile Shrimp Alkaline Phosphatase
pubmed doi rcsb
molecule tags Hydrolase
total genus 188
structure length 476
sequence length 476
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1k7hA00
4GTZA 5TJ3A 3SZYA 2W5WA 4LR2A 4UOPA 3NKRA 5INHA 1ANIA 1O99A 3T00A 1AJDA 3CMRA 1KH4A 2RH6A 5HRTA 4MY4A 5AJ9A 3A52A 3B5QA 1SHQA 2IFYA 1KH7A 3IGZB 4UORA 3UN2A 4ZG7A 3TG0A 1ED9A 4LRCA 4UPLA 4LR9A 4ZG9A 3TWZA 5EGHA 4LREA 1HDHA 5IJQA 3WAWA 4CYRA 2W5QA 4KJGA 5L0KA 3NVLA 3TX0A 1ALKA 2W5TA 1EW2A 3WAYA 1E1ZP 3T01A 3UNYA 3Q3QA 5LRNA 2W8DA 3M7VA 1E2SP 4KAVA 3WAXA 3IGYB 1B8JA 3MK0A 5IJSA 3UN5A 1URAA 1URBA 5LQQA 3NKMA 3T02A 1ZEDA 3UN3A 1P49A 4B56A 2D1GA 5DLWA 3ED4A 1Y6VA 4MHXA 1KHJA 3M8YA 1K7HA 2GLQA 5DLTA 5LRMA 3M8ZA 3BDHA 4GTWA 4ZGAA 4NWXA 4ZG6A 4QAXA 5L0BA 2W5SA 3NKPA 1ALIA 4KAYA 1KHLA 4YR1A 1SHNA 4LR7A 1AJBA 3DPCA 1EI6A 3NKNA 1FSUA 2GA3A 4LQYA 1E33P 3WBHA 1HJKA 1HQAA 1N2LA 4CXUA 3NKOA 4LR8A 4LRBA 4MIVA 2GSOA 4NWJA 4TN0A 1ELXA 4FDIA 5GOVA 1EQJA 1ZEFA 2GSNA 1EW8A 1O98A 2X98A 1E3CP 2IUCB 3MK1A 5GRRA 5EGEA 4KJDA 2W5XA 4N7TA 4GTYA 3BDGA 4FDJA 5KXAA 5L0EA 1AJAA 1ED8A 1ANJA 3LXQA 4UPIA 2VQRA 4GTXA 3IDDA 3E2DA 1ALJA 2W5VA 1KHKA 3WAVA 1EW9A 4KM4A 1AJCA 2W5RA 1ALHA 2GSUA 1KHNA 3DYCA 2W8SA 4CXSA 2G9YA 4UOOA 3M8WA 5C66A 3BDGB 3UO0A 5LIAA 1ZEBA 2ZKTA 1KH5A 5DLVA 1ELZA 3KD8A 1AUKA 3NKQA 3MK2A 2IUCA 2XR9A 4CYSA 2QZUA 4UPHA 4CXKA 1KH9A 3SZZA 1ELYA 5K4PA 4UPKA 1N2KA 2ANHA 3BDFA 4LRDA 3OT9A 1EJJA 2XRGA 4LRFA 4LRAA 1Y7AA
chains in the Genus database with same CATH superfamily
4GTZA 5TJ3A 3SZYA 2W5WA 4LR2A 4UOPA 3NKRA 5INHA 1ANIA 1O99A 3T00A 1AJDA 3CMRA 1KH4A 2RH6A 5HRTA 4MY4A 5AJ9A 3A52A 3B5QA 1SHQA 2IFYA 1KH7A 3IGZB 4UORA 3UN2A 4ZG7A 3TG0A 1ED9A 4LRCA 4UPLA 4LR9A 4ZG9A 3TWZA 5EGHA 4LREA 1HDHA 5IJQA 3WAWA 4CYRA 2W5QA 4KJGA 5L0KA 3NVLA 3TX0A 1ALKA 2W5TA 1EW2A 3WAYA 1E1ZP 3T01A 3UNYA 3Q3QA 5LRNA 2W8DA 3M7VA 1E2SP 4KAVA 3WAXA 3IGYB 1B8JA 3MK0A 5IJSA 3UN5A 1URAA 1URBA 5LQQA 3NKMA 3T02A 1ZEDA 3UN3A 1P49A 4B56A 2D1GA 5DLWA 3ED4A 1Y6VA 4MHXA 1KHJA 3M8YA 1K7HA 2GLQA 5DLTA 5LRMA 3M8ZA 3BDHA 4GTWA 4ZGAA 4NWXA 4ZG6A 4QAXA 5L0BA 2W5SA 3NKPA 1ALIA 4KAYA 1KHLA 4YR1A 1SHNA 4LR7A 1AJBA 3DPCA 1EI6A 3NKNA 1FSUA 2GA3A 4LQYA 1E33P 3WBHA 1HJKA 1HQAA 1N2LA 4CXUA 3NKOA 4LR8A 4LRBA 4MIVA 2GSOA 4NWJA 4TN0A 1ELXA 4FDIA 5GOVA 1EQJA 1ZEFA 2GSNA 1EW8A 1O98A 2X98A 1E3CP 2IUCB 3MK1A 5GRRA 5EGEA 4KJDA 2W5XA 4N7TA 4GTYA 3BDGA 4FDJA 5KXAA 5L0EA 1AJAA 1ED8A 1ANJA 3LXQA 4UPIA 2VQRA 4GTXA 3IDDA 3E2DA 1ALJA 2W5VA 1KHKA 3WAVA 1EW9A 4KM4A 1AJCA 2W5RA 1ALHA 2GSUA 1KHNA 3DYCA 2W8SA 4CXSA 2G9YA 4UOOA 3M8WA 5C66A 3BDGB 3UO0A 5LIAA 1ZEBA 2ZKTA 1KH5A 5DLVA 1ELZA 3KD8A 1AUKA 3NKQA 3MK2A 2IUCA 2XR9A 4CYSA 2QZUA 4UPHA 4CXKA 1KH9A 3SZZA 1ELYA 5K4PA 4UPKA 1N2KA 2ANHA 3BDFA 4LRDA 3OT9A 1EJJA 2XRGA 4LRFA 4LRAA 1Y7AA
chains in the Genus database with same CATH topology
4GTZA 5TJ3A 3SZYA 2W5WA 4LR2A 4UOPA 3NKRA 5INHA 1ANIA 1O99A 3T00A 1AJDA 3CMRA 1KH4A 2RH6A 5HRTA 4MY4A 5AJ9A 3A52A 3B5QA 1SHQA 2IFYA 1KH7A 3IGZB 4UORA 3UN2A 4ZG7A 3TG0A 1ED9A 4LRCA 4UPLA 4LR9A 4ZG9A 3TWZA 5EGHA 4LREA 1HDHA 5IJQA 3WAWA 4CYRA 2W5QA 4KJGA 5L0KA 3NVLA 3TX0A 1ALKA 2W5TA 1EW2A 3WAYA 1E1ZP 3T01A 3UNYA 3Q3QA 5LRNA 2W8DA 3M7VA 1E2SP 4KAVA 3WAXA 3IGYB 1B8JA 3MK0A 5IJSA 3UN5A 1URAA 1URBA 5LQQA 3NKMA 3T02A 1ZEDA 3UN3A 1P49A 4B56A 2D1GA 5DLWA 3ED4A 1Y6VA 4MHXA 1KHJA 3M8YA 1K7HA 2GLQA 5DLTA 5LRMA 3M8ZA 3BDHA 4GTWA 4ZGAA 4NWXA 4ZG6A 4QAXA 5L0BA 2W5SA 3NKPA 1ALIA 4KAYA 1KHLA 4YR1A 1SHNA 4LR7A 1AJBA 3DPCA 1EI6A 3NKNA 1FSUA 2GA3A 4LQYA 1E33P 3WBHA 1HJKA 1HQAA 1N2LA 4CXUA 3NKOA 4LR8A 4LRBA 4MIVA 2GSOA 4NWJA 4TN0A 1ELXA 4FDIA 5GOVA 1EQJA 1ZEFA 2GSNA 1EW8A 1O98A 2X98A 1E3CP 2IUCB 3MK1A 5GRRA 5EGEA 4KJDA 2W5XA 4N7TA 4GTYA 3BDGA 4FDJA 5KXAA 5L0EA 1AJAA 1ED8A 1ANJA 3LXQA 4UPIA 2VQRA 4GTXA 3IDDA 3E2DA 1ALJA 2W5VA 1KHKA 3WAVA 1EW9A 4KM4A 1AJCA 2W5RA 1ALHA 2GSUA 1KHNA 3DYCA 2W8SA 4CXSA 2G9YA 4UOOA 3M8WA 5C66A 3BDGB 3UO0A 5LIAA 1ZEBA 2ZKTA 1KH5A 5DLVA 1ELZA 3KD8A 1AUKA 3NKQA 3MK2A 2IUCA 2XR9A 4CYSA 2QZUA 4UPHA 4CXKA 1KH9A 3SZZA 1ELYA 5K4PA 4UPKA 1N2KA 2ANHA 3BDFA 4LRDA 3OT9A 1EJJA 2XRGA 4LRFA 4LRAA 1Y7AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GTZ A;  5TJ3 A;  3SZY A;  2W5W A;  4LR2 A;  4UOP A;  3NKR A;  5INH A;  1ANI A;  1O99 A;  3T00 A;  1AJD A;  3CMR A;  1KH4 A;  2RH6 A;  5HRT A;  4MY4 A;  5AJ9 A;  3A52 A;  3B5Q A;  1SHQ A;  2IFY A;  1KH7 A;  3IGZ B;  4UOR A;  3UN2 A;  4ZG7 A;  3TG0 A;  1ED9 A;  4LRC A;  4UPL A;  4LR9 A;  4ZG9 A;  3TWZ A;  5EGH A;  4LRE A;  1HDH A;  5IJQ A;  3WAW A;  4CYR A;  2W5Q A;  4KJG A;  5L0K A;  3NVL A;  3TX0 A;  1ALK A;  2W5T A;  1EW2 A;  3WAY A;  1E1Z P;  3T01 A;  3UNY A;  3Q3Q A;  5LRN A;  2W8D A;  3M7V A;  1E2S P;  4KAV A;  3WAX A;  3IGY B;  1B8J A;  3MK0 A;  5IJS A;  3UN5 A;  1URA A;  1URB A;  5LQQ A;  3NKM A;  3T02 A;  1ZED A;  3UN3 A;  1P49 A;  4B56 A;  2D1G A;  5DLW A;  3ED4 A;  1Y6V A;  4MHX A;  1KHJ A;  3M8Y A;  1K7H A;  2GLQ A;  5DLT A;  5LRM A;  3M8Z A;  3BDH A;  4GTW A;  4ZGA A;  4NWX A;  4ZG6 A;  4QAX A;  5L0B A;  2W5S A;  3NKP A;  1ALI A;  4KAY A;  1KHL A;  4YR1 A;  1SHN A;  4LR7 A;  1AJB A;  3DPC A;  1EI6 A;  3NKN A;  1FSU A;  2GA3 A;  4LQY A;  1E33 P;  3WBH A;  1HJK A;  1HQA A;  1N2L A;  4CXU A;  3NKO A;  4LR8 A;  4LRB A;  4MIV A;  2GSO A;  4NWJ A;  4TN0 A;  1ELX A;  4FDI A;  5GOV A;  1EQJ A;  1ZEF A;  2GSN A;  1EW8 A;  1O98 A;  2X98 A;  1E3C P;  2IUC B;  3MK1 A;  5GRR A;  5EGE A;  4KJD A;  2W5X A;  4N7T A;  4GTY A;  3BDG A;  4FDJ A;  5KXA A;  5L0E A;  1AJA A;  1ED8 A;  1ANJ A;  3LXQ A;  4UPI A;  2VQR A;  4GTX A;  3IDD A;  3E2D A;  1ALJ A;  2W5V A;  1KHK A;  3WAV A;  1EW9 A;  4KM4 A;  1AJC A;  2W5R A;  1ALH A;  2GSU A;  1KHN A;  3DYC A;  2W8S A;  4CXS A;  2G9Y A;  4UOO A;  3M8W A;  5C66 A;  3BDG B;  3UO0 A;  5LIA A;  1ZEB A;  2ZKT A;  1KH5 A;  5DLV A;  1ELZ A;  3KD8 A;  1AUK A;  3NKQ A;  3MK2 A;  2IUC A;  2XR9 A;  4CYS A;  2QZU A;  4UPH A;  4CXK A;  1KH9 A;  3SZZ A;  1ELY A;  5K4P A;  4UPK A;  1N2K A;  2ANH A;  3BDF A;  4LRD A;  3OT9 A;  1EJJ A;  2XRG A;  4LRF A;  4LRA A;  1Y7A A; 
#chains in the Genus database with same CATH topology
 4GTZ A;  5TJ3 A;  3SZY A;  2W5W A;  4LR2 A;  4UOP A;  3NKR A;  5INH A;  1ANI A;  1O99 A;  3T00 A;  1AJD A;  3CMR A;  1KH4 A;  2RH6 A;  5HRT A;  4MY4 A;  5AJ9 A;  3A52 A;  3B5Q A;  1SHQ A;  2IFY A;  1KH7 A;  3IGZ B;  4UOR A;  3UN2 A;  4ZG7 A;  3TG0 A;  1ED9 A;  4LRC A;  4UPL A;  4LR9 A;  4ZG9 A;  3TWZ A;  5EGH A;  4LRE A;  1HDH A;  5IJQ A;  3WAW A;  4CYR A;  2W5Q A;  4KJG A;  5L0K A;  3NVL A;  3TX0 A;  1ALK A;  2W5T A;  1EW2 A;  3WAY A;  1E1Z P;  3T01 A;  3UNY A;  3Q3Q A;  5LRN A;  2W8D A;  3M7V A;  1E2S P;  4KAV A;  3WAX A;  3IGY B;  1B8J A;  3MK0 A;  5IJS A;  3UN5 A;  1URA A;  1URB A;  5LQQ A;  3NKM A;  3T02 A;  1ZED A;  3UN3 A;  1P49 A;  4B56 A;  2D1G A;  5DLW A;  3ED4 A;  1Y6V A;  4MHX A;  1KHJ A;  3M8Y A;  1K7H A;  2GLQ A;  5DLT A;  5LRM A;  3M8Z A;  3BDH A;  4GTW A;  4ZGA A;  4NWX A;  4ZG6 A;  4QAX A;  5L0B A;  2W5S A;  3NKP A;  1ALI A;  4KAY A;  1KHL A;  4YR1 A;  1SHN A;  4LR7 A;  1AJB A;  3DPC A;  1EI6 A;  3NKN A;  1FSU A;  2GA3 A;  4LQY A;  1E33 P;  3WBH A;  1HJK A;  1HQA A;  1N2L A;  4CXU A;  3NKO A;  4LR8 A;  4LRB A;  4MIV A;  2GSO A;  4NWJ A;  4TN0 A;  1ELX A;  4FDI A;  5GOV A;  1EQJ A;  1ZEF A;  2GSN A;  1EW8 A;  1O98 A;  2X98 A;  1E3C P;  2IUC B;  3MK1 A;  5GRR A;  5EGE A;  4KJD A;  2W5X A;  4N7T A;  4GTY A;  3BDG A;  4FDJ A;  5KXA A;  5L0E A;  1AJA A;  1ED8 A;  1ANJ A;  3LXQ A;  4UPI A;  2VQR A;  4GTX A;  3IDD A;  3E2D A;  1ALJ A;  2W5V A;  1KHK A;  3WAV A;  1EW9 A;  4KM4 A;  1AJC A;  2W5R A;  1ALH A;  2GSU A;  1KHN A;  3DYC A;  2W8S A;  4CXS A;  2G9Y A;  4UOO A;  3M8W A;  5C66 A;  3BDG B;  3UO0 A;  5LIA A;  1ZEB A;  2ZKT A;  1KH5 A;  5DLV A;  1ELZ A;  3KD8 A;  1AUK A;  3NKQ A;  3MK2 A;  2IUC A;  2XR9 A;  4CYS A;  2QZU A;  4UPH A;  4CXK A;  1KH9 A;  3SZZ A;  1ELY A;  5K4P A;  4UPK A;  1N2K A;  2ANH A;  3BDF A;  4LRD A;  3OT9 A;  1EJJ A;  2XRG A;  4LRF A;  4LRA A;  1Y7A A; 
#chains in the Genus database with same CATH homology
 4GTZ A;  5TJ3 A;  3SZY A;  2W5W A;  4LR2 A;  4UOP A;  3NKR A;  5INH A;  1ANI A;  1O99 A;  3T00 A;  1AJD A;  3CMR A;  1KH4 A;  2RH6 A;  5HRT A;  4MY4 A;  5AJ9 A;  3A52 A;  3B5Q A;  1SHQ A;  2IFY A;  1KH7 A;  3IGZ B;  4UOR A;  3UN2 A;  4ZG7 A;  3TG0 A;  1ED9 A;  4LRC A;  4UPL A;  4LR9 A;  4ZG9 A;  3TWZ A;  5EGH A;  4LRE A;  1HDH A;  5IJQ A;  3WAW A;  4CYR A;  2W5Q A;  4KJG A;  5L0K A;  3NVL A;  3TX0 A;  1ALK A;  2W5T A;  1EW2 A;  3WAY A;  1E1Z P;  3T01 A;  3UNY A;  3Q3Q A;  5LRN A;  2W8D A;  3M7V A;  1E2S P;  4KAV A;  3WAX A;  3IGY B;  1B8J A;  3MK0 A;  5IJS A;  3UN5 A;  1URA A;  1URB A;  5LQQ A;  3NKM A;  3T02 A;  1ZED A;  3UN3 A;  1P49 A;  4B56 A;  2D1G A;  5DLW A;  3ED4 A;  1Y6V A;  4MHX A;  1KHJ A;  3M8Y A;  1K7H A;  2GLQ A;  5DLT A;  5LRM A;  3M8Z A;  3BDH A;  4GTW A;  4ZGA A;  4NWX A;  4ZG6 A;  4QAX A;  5L0B A;  2W5S A;  3NKP A;  1ALI A;  4KAY A;  1KHL A;  4YR1 A;  1SHN A;  4LR7 A;  1AJB A;  3DPC A;  1EI6 A;  3NKN A;  1FSU A;  2GA3 A;  4LQY A;  1E33 P;  3WBH A;  1HJK A;  1HQA A;  1N2L A;  4CXU A;  3NKO A;  4LR8 A;  4LRB A;  4MIV A;  2GSO A;  4NWJ A;  4TN0 A;  1ELX A;  4FDI A;  5GOV A;  1EQJ A;  1ZEF A;  2GSN A;  1EW8 A;  1O98 A;  2X98 A;  1E3C P;  2IUC B;  3MK1 A;  5GRR A;  5EGE A;  4KJD A;  2W5X A;  4N7T A;  4GTY A;  3BDG A;  4FDJ A;  5KXA A;  5L0E A;  1AJA A;  1ED8 A;  1ANJ A;  3LXQ A;  4UPI A;  2VQR A;  4GTX A;  3IDD A;  3E2D A;  1ALJ A;  2W5V A;  1KHK A;  3WAV A;  1EW9 A;  4KM4 A;  1AJC A;  2W5R A;  1ALH A;  2GSU A;  1KHN A;  3DYC A;  2W8S A;  4CXS A;  2G9Y A;  4UOO A;  3M8W A;  5C66 A;  3BDG B;  3UO0 A;  5LIA A;  1ZEB A;  2ZKT A;  1KH5 A;  5DLV A;  1ELZ A;  3KD8 A;  1AUK A;  3NKQ A;  3MK2 A;  2IUC A;  2XR9 A;  4CYS A;  2QZU A;  4UPH A;  4CXK A;  1KH9 A;  3SZZ A;  1ELY A;  5K4P A;  4UPK A;  1N2K A;  2ANH A;  3BDF A;  4LRD A;  3OT9 A;  1EJJ A;  2XRG A;  4LRF A;  4LRA A;  1Y7A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...