1K7HA

Crystal structure of shrimp alkaline phosphatase
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
Knots found
sequence length
476
structure length
476
Chain Sequence
EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title The 1.9 A Crystal Structure of Heat-Labile Shrimp Alkaline Phosphatase
pubmed doi rcsb
total genus 188
structure length 476
sequence length 476
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1k7hA00
4GTWA 1SHQA 4GTZA 2GA3A 4LRAA 3UNYA 1ZEFA 2QZUA 3UN3A 2W8SA 3OT9A 4CYSA 1EI6A 3T00A 4LRCA 1AJDA 4UPLA 3KD8A 2D1GA 1AJAA 1EW2A 2X98A 1ANIA 3M7VA 4KAYA 1KH4A 4LR8A 1URBA 3NKNA 4ZG6A 1K7HA 5DLWA 1N2KA 3UN5A 1ZEDA 1ZEBA 1Y7AA 1E33P 4LREA 2ANHA 1KH9A 1AJBA 1ALIA 1KH7A 3Q3QA 4NWXA 3BDGB 3UO0A 1ELXA 4YR1A 1ALJA 3CMRA 1ALKA 3IDDA 3E2DA 5L0KA 2W5VA 3DYCA 3WAVA 3M8ZA 5DLTA 4N7TA 3LXQA 1ED9A 1KHNA 3M8WA 5K4PA 1ELYA 1HJKA 3ED4A 5L0EA 3WAYA 1HDHA 1URAA 2G9YA 4KJDA 3MK2A 1N2LA 3NVLA 1P49A 1ANJA 2XRGA 4CYRA 3WAWA 3BDHA 4UOOA 4UOPA 2W5WA 5IJSA 4FDIA 2W5SA 1EQJA 4GTYA 4UPHA 5C66A 3TX0A 3UN2A 4LQYA 5LQQA 3B5QA 4KAVA 4ZG9A 1ALHA 4ZG7A 4KJGA 3SZYA 3SZZA 4LRDA 1KHJA 1KHKA 3NKRA 3NKQA 2W5QA 5KXAA 3BDGA 1B8JA 1FSUA 3M8YA 5AJ9A 2ZKTA 2W5XA 2W8DA 4LR7A 1KHLA 1KH5A 4MHXA 1HQAA 4GTXA 4ZGAA 3MK0A 4FDJA 4LRBA 2VQRA 5IJQA 5LRNA 5TJ3A 2IUCB 4CXSA 5HRTA 3NKPA 2IUCA 1E1ZP 3BDFA 3WAXA 1Y6VA 5LIAA 4CXKA 4MY4A 3TWZA 3WBHA 2GSOA 3T01A 1E2SP 4MIVA 3TG0A 1E3CP 4B56A 5LRMA 1ED8A 5GRRA 5GOVA 2GSNA 3MK1A 4KM4A 5DLVA 1SHNA 2IFYA 5INHA 1EJJA 4CXUA 3NKOA 1AUKA 2RH6A 2GLQA 4UORA 2XR9A 2W5RA 1ELZA 4LRFA 1AJCA 4UPKA 1EW8A 1O99A 4NWJA 3T02A 5EGEA 4LR2A 4LR9A 2GSUA 3IGYB 5L0BA 2W5TA 1O98A 3A52A 4UPIA 3NKMA 4TN0A 3IGZB 5EGHA 1EW9A 4QAXA 3DPCA
chains in the Genus database with same CATH superfamily
4GTWA 1SHQA 4GTZA 2GA3A 4LRAA 3UNYA 1ZEFA 2QZUA 3UN3A 2W8SA 3OT9A 4CYSA 1EI6A 3T00A 4LRCA 1AJDA 4UPLA 3KD8A 2D1GA 1AJAA 1EW2A 2X98A 1ANIA 3M7VA 4KAYA 1KH4A 4LR8A 1URBA 3NKNA 4ZG6A 1K7HA 5DLWA 1N2KA 3UN5A 1ZEDA 1ZEBA 1Y7AA 1E33P 4LREA 2ANHA 1KH9A 1AJBA 1ALIA 1KH7A 3Q3QA 4NWXA 3BDGB 3UO0A 1ELXA 4YR1A 1ALJA 3CMRA 1ALKA 3IDDA 3E2DA 5L0KA 2W5VA 3DYCA 3WAVA 3M8ZA 5DLTA 4N7TA 3LXQA 1ED9A 1KHNA 3M8WA 5K4PA 1ELYA 1HJKA 3ED4A 5L0EA 3WAYA 1HDHA 1URAA 2G9YA 4KJDA 3MK2A 1N2LA 3NVLA 1P49A 1ANJA 2XRGA 4CYRA 3WAWA 3BDHA 4UOOA 4UOPA 2W5WA 5IJSA 4FDIA 2W5SA 1EQJA 4GTYA 4UPHA 5C66A 3TX0A 3UN2A 4LQYA 5LQQA 3B5QA 4KAVA 4ZG9A 1ALHA 4ZG7A 4KJGA 3SZYA 3SZZA 4LRDA 1KHJA 1KHKA 3NKRA 3NKQA 2W5QA 5KXAA 3BDGA 1B8JA 1FSUA 3M8YA 5AJ9A 2ZKTA 2W5XA 2W8DA 4LR7A 1KHLA 1KH5A 4MHXA 1HQAA 4GTXA 4ZGAA 3MK0A 4FDJA 4LRBA 2VQRA 5IJQA 5LRNA 5TJ3A 2IUCB 4CXSA 5HRTA 3NKPA 2IUCA 1E1ZP 3BDFA 3WAXA 1Y6VA 5LIAA 4CXKA 4MY4A 3TWZA 3WBHA 2GSOA 3T01A 1E2SP 4MIVA 3TG0A 1E3CP 4B56A 5LRMA 1ED8A 5GRRA 5GOVA 2GSNA 3MK1A 4KM4A 5DLVA 1SHNA 2IFYA 5INHA 1EJJA 4CXUA 3NKOA 1AUKA 2RH6A 2GLQA 4UORA 2XR9A 2W5RA 1ELZA 4LRFA 1AJCA 4UPKA 1EW8A 1O99A 4NWJA 3T02A 5EGEA 4LR2A 4LR9A 2GSUA 3IGYB 5L0BA 2W5TA 1O98A 3A52A 4UPIA 3NKMA 4TN0A 3IGZB 5EGHA 1EW9A 4QAXA 3DPCA
chains in the Genus database with same CATH topology
4GTWA 1SHQA 4GTZA 2GA3A 4LRAA 3UNYA 1ZEFA 2QZUA 3UN3A 2W8SA 3OT9A 4CYSA 1EI6A 3T00A 4LRCA 1AJDA 4UPLA 3KD8A 2D1GA 1AJAA 1EW2A 2X98A 1ANIA 3M7VA 4KAYA 1KH4A 4LR8A 1URBA 3NKNA 4ZG6A 1K7HA 5DLWA 1N2KA 3UN5A 1ZEDA 1ZEBA 1Y7AA 1E33P 4LREA 2ANHA 1KH9A 1AJBA 1ALIA 1KH7A 3Q3QA 4NWXA 3BDGB 3UO0A 1ELXA 4YR1A 1ALJA 3CMRA 1ALKA 3IDDA 3E2DA 5L0KA 2W5VA 3DYCA 3WAVA 3M8ZA 5DLTA 4N7TA 3LXQA 1ED9A 1KHNA 3M8WA 5K4PA 1ELYA 1HJKA 3ED4A 5L0EA 3WAYA 1HDHA 1URAA 2G9YA 4KJDA 3MK2A 1N2LA 3NVLA 1P49A 1ANJA 2XRGA 4CYRA 3WAWA 3BDHA 4UOOA 4UOPA 2W5WA 5IJSA 4FDIA 2W5SA 1EQJA 4GTYA 4UPHA 5C66A 3TX0A 3UN2A 4LQYA 5LQQA 3B5QA 4KAVA 4ZG9A 1ALHA 4ZG7A 4KJGA 3SZYA 3SZZA 4LRDA 1KHJA 1KHKA 3NKRA 3NKQA 2W5QA 5KXAA 3BDGA 1B8JA 1FSUA 3M8YA 5AJ9A 2ZKTA 2W5XA 2W8DA 4LR7A 1KHLA 1KH5A 4MHXA 1HQAA 4GTXA 4ZGAA 3MK0A 4FDJA 4LRBA 2VQRA 5IJQA 5LRNA 5TJ3A 2IUCB 4CXSA 5HRTA 3NKPA 2IUCA 1E1ZP 3BDFA 3WAXA 1Y6VA 5LIAA 4CXKA 4MY4A 3TWZA 3WBHA 2GSOA 3T01A 1E2SP 4MIVA 3TG0A 1E3CP 4B56A 5LRMA 1ED8A 5GRRA 5GOVA 2GSNA 3MK1A 4KM4A 5DLVA 1SHNA 2IFYA 5INHA 1EJJA 4CXUA 3NKOA 1AUKA 2RH6A 2GLQA 4UORA 2XR9A 2W5RA 1ELZA 4LRFA 1AJCA 4UPKA 1EW8A 1O99A 4NWJA 3T02A 5EGEA 4LR2A 4LR9A 2GSUA 3IGYB 5L0BA 2W5TA 1O98A 3A52A 4UPIA 3NKMA 4TN0A 3IGZB 5EGHA 1EW9A 4QAXA 3DPCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GTW A;  1SHQ A;  4GTZ A;  2GA3 A;  4LRA A;  3UNY A;  1ZEF A;  2QZU A;  3UN3 A;  2W8S A;  3OT9 A;  4CYS A;  1EI6 A;  3T00 A;  4LRC A;  1AJD A;  4UPL A;  3KD8 A;  2D1G A;  1AJA A;  1EW2 A;  2X98 A;  1ANI A;  3M7V A;  4KAY A;  1KH4 A;  4LR8 A;  1URB A;  3NKN A;  4ZG6 A;  1K7H A;  5DLW A;  1N2K A;  3UN5 A;  1ZED A;  1ZEB A;  1Y7A A;  1E33 P;  4LRE A;  2ANH A;  1KH9 A;  1AJB A;  1ALI A;  1KH7 A;  3Q3Q A;  4NWX A;  3BDG B;  3UO0 A;  1ELX A;  4YR1 A;  1ALJ A;  3CMR A;  1ALK A;  3IDD A;  3E2D A;  5L0K A;  2W5V A;  3DYC A;  3WAV A;  3M8Z A;  5DLT A;  4N7T A;  3LXQ A;  1ED9 A;  1KHN A;  3M8W A;  5K4P A;  1ELY A;  1HJK A;  3ED4 A;  5L0E A;  3WAY A;  1HDH A;  1URA A;  2G9Y A;  4KJD A;  3MK2 A;  1N2L A;  3NVL A;  1P49 A;  1ANJ A;  2XRG A;  4CYR A;  3WAW A;  3BDH A;  4UOO A;  4UOP A;  2W5W A;  5IJS A;  4FDI A;  2W5S A;  1EQJ A;  4GTY A;  4UPH A;  5C66 A;  3TX0 A;  3UN2 A;  4LQY A;  5LQQ A;  3B5Q A;  4KAV A;  4ZG9 A;  1ALH A;  4ZG7 A;  4KJG A;  3SZY A;  3SZZ A;  4LRD A;  1KHJ A;  1KHK A;  3NKR A;  3NKQ A;  2W5Q A;  5KXA A;  3BDG A;  1B8J A;  1FSU A;  3M8Y A;  5AJ9 A;  2ZKT A;  2W5X A;  2W8D A;  4LR7 A;  1KHL A;  1KH5 A;  4MHX A;  1HQA A;  4GTX A;  4ZGA A;  3MK0 A;  4FDJ A;  4LRB A;  2VQR A;  5IJQ A;  5LRN A;  5TJ3 A;  2IUC B;  4CXS A;  5HRT A;  3NKP A;  2IUC A;  1E1Z P;  3BDF A;  3WAX A;  1Y6V A;  5LIA A;  4CXK A;  4MY4 A;  3TWZ A;  3WBH A;  2GSO A;  3T01 A;  1E2S P;  4MIV A;  3TG0 A;  1E3C P;  4B56 A;  5LRM A;  1ED8 A;  5GRR A;  5GOV A;  2GSN A;  3MK1 A;  4KM4 A;  5DLV A;  1SHN A;  2IFY A;  5INH A;  1EJJ A;  4CXU A;  3NKO A;  1AUK A;  2RH6 A;  2GLQ A;  4UOR A;  2XR9 A;  2W5R A;  1ELZ A;  4LRF A;  1AJC A;  4UPK A;  1EW8 A;  1O99 A;  4NWJ A;  3T02 A;  5EGE A;  4LR2 A;  4LR9 A;  2GSU A;  3IGY B;  5L0B A;  2W5T A;  1O98 A;  3A52 A;  4UPI A;  3NKM A;  4TN0 A;  3IGZ B;  5EGH A;  1EW9 A;  4QAX A;  3DPC A; 
#chains in the Genus database with same CATH topology
 4GTW A;  1SHQ A;  4GTZ A;  2GA3 A;  4LRA A;  3UNY A;  1ZEF A;  2QZU A;  3UN3 A;  2W8S A;  3OT9 A;  4CYS A;  1EI6 A;  3T00 A;  4LRC A;  1AJD A;  4UPL A;  3KD8 A;  2D1G A;  1AJA A;  1EW2 A;  2X98 A;  1ANI A;  3M7V A;  4KAY A;  1KH4 A;  4LR8 A;  1URB A;  3NKN A;  4ZG6 A;  1K7H A;  5DLW A;  1N2K A;  3UN5 A;  1ZED A;  1ZEB A;  1Y7A A;  1E33 P;  4LRE A;  2ANH A;  1KH9 A;  1AJB A;  1ALI A;  1KH7 A;  3Q3Q A;  4NWX A;  3BDG B;  3UO0 A;  1ELX A;  4YR1 A;  1ALJ A;  3CMR A;  1ALK A;  3IDD A;  3E2D A;  5L0K A;  2W5V A;  3DYC A;  3WAV A;  3M8Z A;  5DLT A;  4N7T A;  3LXQ A;  1ED9 A;  1KHN A;  3M8W A;  5K4P A;  1ELY A;  1HJK A;  3ED4 A;  5L0E A;  3WAY A;  1HDH A;  1URA A;  2G9Y A;  4KJD A;  3MK2 A;  1N2L A;  3NVL A;  1P49 A;  1ANJ A;  2XRG A;  4CYR A;  3WAW A;  3BDH A;  4UOO A;  4UOP A;  2W5W A;  5IJS A;  4FDI A;  2W5S A;  1EQJ A;  4GTY A;  4UPH A;  5C66 A;  3TX0 A;  3UN2 A;  4LQY A;  5LQQ A;  3B5Q A;  4KAV A;  4ZG9 A;  1ALH A;  4ZG7 A;  4KJG A;  3SZY A;  3SZZ A;  4LRD A;  1KHJ A;  1KHK A;  3NKR A;  3NKQ A;  2W5Q A;  5KXA A;  3BDG A;  1B8J A;  1FSU A;  3M8Y A;  5AJ9 A;  2ZKT A;  2W5X A;  2W8D A;  4LR7 A;  1KHL A;  1KH5 A;  4MHX A;  1HQA A;  4GTX A;  4ZGA A;  3MK0 A;  4FDJ A;  4LRB A;  2VQR A;  5IJQ A;  5LRN A;  5TJ3 A;  2IUC B;  4CXS A;  5HRT A;  3NKP A;  2IUC A;  1E1Z P;  3BDF A;  3WAX A;  1Y6V A;  5LIA A;  4CXK A;  4MY4 A;  3TWZ A;  3WBH A;  2GSO A;  3T01 A;  1E2S P;  4MIV A;  3TG0 A;  1E3C P;  4B56 A;  5LRM A;  1ED8 A;  5GRR A;  5GOV A;  2GSN A;  3MK1 A;  4KM4 A;  5DLV A;  1SHN A;  2IFY A;  5INH A;  1EJJ A;  4CXU A;  3NKO A;  1AUK A;  2RH6 A;  2GLQ A;  4UOR A;  2XR9 A;  2W5R A;  1ELZ A;  4LRF A;  1AJC A;  4UPK A;  1EW8 A;  1O99 A;  4NWJ A;  3T02 A;  5EGE A;  4LR2 A;  4LR9 A;  2GSU A;  3IGY B;  5L0B A;  2W5T A;  1O98 A;  3A52 A;  4UPI A;  3NKM A;  4TN0 A;  3IGZ B;  5EGH A;  1EW9 A;  4QAX A;  3DPC A; 
#chains in the Genus database with same CATH homology
 4GTW A;  1SHQ A;  4GTZ A;  2GA3 A;  4LRA A;  3UNY A;  1ZEF A;  2QZU A;  3UN3 A;  2W8S A;  3OT9 A;  4CYS A;  1EI6 A;  3T00 A;  4LRC A;  1AJD A;  4UPL A;  3KD8 A;  2D1G A;  1AJA A;  1EW2 A;  2X98 A;  1ANI A;  3M7V A;  4KAY A;  1KH4 A;  4LR8 A;  1URB A;  3NKN A;  4ZG6 A;  1K7H A;  5DLW A;  1N2K A;  3UN5 A;  1ZED A;  1ZEB A;  1Y7A A;  1E33 P;  4LRE A;  2ANH A;  1KH9 A;  1AJB A;  1ALI A;  1KH7 A;  3Q3Q A;  4NWX A;  3BDG B;  3UO0 A;  1ELX A;  4YR1 A;  1ALJ A;  3CMR A;  1ALK A;  3IDD A;  3E2D A;  5L0K A;  2W5V A;  3DYC A;  3WAV A;  3M8Z A;  5DLT A;  4N7T A;  3LXQ A;  1ED9 A;  1KHN A;  3M8W A;  5K4P A;  1ELY A;  1HJK A;  3ED4 A;  5L0E A;  3WAY A;  1HDH A;  1URA A;  2G9Y A;  4KJD A;  3MK2 A;  1N2L A;  3NVL A;  1P49 A;  1ANJ A;  2XRG A;  4CYR A;  3WAW A;  3BDH A;  4UOO A;  4UOP A;  2W5W A;  5IJS A;  4FDI A;  2W5S A;  1EQJ A;  4GTY A;  4UPH A;  5C66 A;  3TX0 A;  3UN2 A;  4LQY A;  5LQQ A;  3B5Q A;  4KAV A;  4ZG9 A;  1ALH A;  4ZG7 A;  4KJG A;  3SZY A;  3SZZ A;  4LRD A;  1KHJ A;  1KHK A;  3NKR A;  3NKQ A;  2W5Q A;  5KXA A;  3BDG A;  1B8J A;  1FSU A;  3M8Y A;  5AJ9 A;  2ZKT A;  2W5X A;  2W8D A;  4LR7 A;  1KHL A;  1KH5 A;  4MHX A;  1HQA A;  4GTX A;  4ZGA A;  3MK0 A;  4FDJ A;  4LRB A;  2VQR A;  5IJQ A;  5LRN A;  5TJ3 A;  2IUC B;  4CXS A;  5HRT A;  3NKP A;  2IUC A;  1E1Z P;  3BDF A;  3WAX A;  1Y6V A;  5LIA A;  4CXK A;  4MY4 A;  3TWZ A;  3WBH A;  2GSO A;  3T01 A;  1E2S P;  4MIV A;  3TG0 A;  1E3C P;  4B56 A;  5LRM A;  1ED8 A;  5GRR A;  5GOV A;  2GSN A;  3MK1 A;  4KM4 A;  5DLV A;  1SHN A;  2IFY A;  5INH A;  1EJJ A;  4CXU A;  3NKO A;  1AUK A;  2RH6 A;  2GLQ A;  4UOR A;  2XR9 A;  2W5R A;  1ELZ A;  4LRF A;  1AJC A;  4UPK A;  1EW8 A;  1O99 A;  4NWJ A;  3T02 A;  5EGE A;  4LR2 A;  4LR9 A;  2GSU A;  3IGY B;  5L0B A;  2W5T A;  1O98 A;  3A52 A;  4UPI A;  3NKM A;  4TN0 A;  3IGZ B;  5EGH A;  1EW9 A;  4QAX A;  3DPC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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