1K7TA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,6gal complex
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords agglutinin isolectin 3
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
total genus 40
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA04
1UHAA 1WKXA 2UVOA 1ULNA 1WGTA 7WGAA 1ULKA 4MPIA 1P9ZA 2DKVA 2CWGA 4WP4A 1HEVA 1K7TA 1K7VA 1K7UA 9WGAA 1P9GA 2LB7A 2X3TA 1WGCA 1Q9BA 2WGCA 4AMLA 1ULMA 2X52A
chains in the Genus database with same CATH superfamily
1SGRI 1S20A 4B6DA 1PTQA 1WTJA 2WCYA 2CWFA 1SGNI 2F3CI 1DS2I 2KMRA 1U5KA 5J8FA 4OVOA 1VDDA 2ODDA 2NU4I 2UVOA 1TGSI 1WGTA 4JCVE 1SGYI 3OXLA 3MEKA 1ULKA 5EX3A 1OMUA 1V1HA 2GKRI 4HGUA 1PPFI 2ROWA 2ENNA 2UZ3A 2JW6A 2WVJA 1HEVA 1FAQA 1NUBA 2P6AC 1CGJI 1K7UA 1R79A 2SGEI 2E73A 4L9MA 1CE3A 2LB7A 1N13A 1IY6A 2GKVA 1HDLA 2WGCA 1Q9BA 2N71A 1V1IA 2SGPI 3UGLA 4A24A 2SGFI 2JZMA 1CSOI 2B8TA 2SGDI 3FSXA 2YQPA 2KMPA 4UXHA 2X52A 1TIHA 5DAEA 1HPTA 1FARA 2JYYA 1R0RI 1Y1CA 2N1AB 2CWHA 5E3PA 5FUVA 2BUSA 5HI7A 1TBNA 3TO9A 2LUYA 1UHAA 2PQ8A 5J8CA 1KMAA 1CGII 1TOTA 1W4RA 1ULNA 2CJSC 1TBOA 3OXFA 3OXGA 1Y8FA 1YU6C 1CT4I 3GOXA 1Y1BA 3QAHA 5EX0A 1SGPI 2QQ0A 2QQEA 3BJIA 2ARPF 2V1CC 2ORWA 1W3SA 2ERWA 1PCEA 3UEJA 3UGIA 3PDNA 2YUUA 1LR9A 3TO6A 2ENZA 2OD1A 1NXUA 1BMOA 2NU2I 1Z7KB 2SGQI 3UGDA 9WGAA 1IW4A 1P9GA 3HH2C 1FY7A 1M8BA 4DNCA 1CHOI 2GIVA 2QQCA 3QTLD 5FUYA 2FNFX 1MT1A 3SGBI 4AMLA 5HQ8A 1ULMA 1TBQR 2J87A 2V53A 3TO7A 3VDPA 1MJBA 2ELIA 1SGEI 1LR7A 2DIPA 2N17A 3D00A 1MJAA 3TJQA 2B0UC 3B4VC 3E59A 2W0TA 1CT2I 2QPOA 2RIJA 1H0ZA 1SGDI 1IY5A 3R5BA 3R5CA 4SGBI 1BUSA 5CCLA 1P9ZA 5FUXA 1MJ9A 2CWGA 2L7XA 1OYVI 1FYBA 4E1PA 2OZUA 1RFHA 2L8EA 2DB6A 3VE5A 1TUSA 1Z2IA 2NU3I 5E3QA 1UVFA 2M5XA 2JA1A 1SGQI 3R5AA 1HJAI 3TOBA 1PTRA 2KMQA 2VRWB 3R5DA 1WGCA 1UUCA 1X74A 3QWPA 3SEKC 3UFFA 1KBFA 1M8CA 1LR8A 1KBEA 2KMOA 1X4SA 1TBRR 3TOAA 1WKXA 3UEYA 1XA6A 2LEOA 1AN1I 1DS3I 2NU1I 1OMTA 3VDUA 1TURA 5CCMA 7WGAA 4MPIA 2GKTI 4GI3C 2E5RA 2XRCA 4UXJA 2DKVA 3UOEA 5E3RA 3CXLA 2OU2A 2RC4A 1OVOA 4WP4A 2V1CA 2Y0MA 3FSYA 3KY9A 1XBTA 1K7TA 3RU0A 1K7VA 3E2IA 3OVOA 4UXIA 3OL0A 3FC3A 2K9HA 5FUWA 3SGQI 4E1RA 2GVIA 2X3TA 1UVGA 1XX6A 1YTPA 2N52A 1PJUA 2A20A 2KCXA 2J9RA 5JHWC 4FKDA 2JXDA 2OVOA 2QQDA 2ORVA 2NU0I 1CT0I
chains in the Genus database with same CATH topology
1UHAA 1WKXA 2UVOA 1ULNA 1WGTA 7WGAA 1ULKA 4MPIA 1P9ZA 2DKVA 2CWGA 4WP4A 1HEVA 1K7TA 1K7VA 1K7UA 9WGAA 1P9GA 2LB7A 2X3TA 1WGCA 1Q9BA 2WGCA 4AMLA 1ULMA 2X52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UHA A;  1WKX A;  2UVO A;  1ULN A;  1WGT A;  7WGA A;  1ULK A;  4MPI A;  1P9Z A;  2DKV A;  2CWG A;  4WP4 A;  1HEV A;  1K7T A;  1K7V A;  1K7U A;  9WGA A;  1P9G A;  2LB7 A;  2X3T A;  1WGC A;  1Q9B A;  2WGC A;  4AML A;  1ULM A;  2X52 A; 
#chains in the Genus database with same CATH topology
 1SGR I;  1S20 A;  4B6D A;  1PTQ A;  1WTJ A;  2WCY A;  2CWF A;  1SGN I;  2F3C I;  1DS2 I;  2KMR A;  1U5K A;  5J8F A;  4OVO A;  1VDD A;  2ODD A;  2NU4 I;  2UVO A;  1TGS I;  1WGT A;  4JCV E;  1SGY I;  3OXL A;  3MEK A;  1ULK A;  5EX3 A;  1OMU A;  1V1H A;  2GKR I;  4HGU A;  1PPF I;  2ROW A;  2ENN A;  2UZ3 A;  2JW6 A;  2WVJ A;  1HEV A;  1FAQ A;  1NUB A;  2P6A C;  1CGJ I;  1K7U A;  1R79 A;  2SGE I;  2E73 A;  4L9M A;  1CE3 A;  2LB7 A;  1N13 A;  1IY6 A;  2GKV A;  1HDL A;  2WGC A;  1Q9B A;  2N71 A;  1V1I A;  2SGP I;  3UGL A;  4A24 A;  2SGF I;  2JZM A;  1CSO I;  2B8T A;  2SGD I;  3FSX A;  2YQP A;  2KMP A;  4UXH A;  2X52 A;  1TIH A;  5DAE A;  1HPT A;  1FAR A;  2JYY A;  1R0R I;  1Y1C A;  2N1A B;  2CWH A;  5E3P A;  5FUV A;  2BUS A;  5HI7 A;  1TBN A;  3TO9 A;  2LUY A;  1UHA A;  2PQ8 A;  5J8C A;  1KMA A;  1CGI I;  1TOT A;  1W4R A;  1ULN A;  2CJS C;  1TBO A;  3OXF A;  3OXG A;  1Y8F A;  1YU6 C;  1CT4 I;  3GOX A;  1Y1B A;  3QAH A;  5EX0 A;  1SGP I;  2QQ0 A;  2QQE A;  3BJI A;  2ARP F;  2V1C C;  2ORW A;  1W3S A;  2ERW A;  1PCE A;  3UEJ A;  3UGI A;  3PDN A;  2YUU A;  1LR9 A;  3TO6 A;  2ENZ A;  2OD1 A;  1NXU A;  1BMO A;  2NU2 I;  1Z7K B;  2SGQ I;  3UGD A;  9WGA A;  1IW4 A;  1P9G A;  3HH2 C;  1FY7 A;  1M8B A;  4DNC A;  1CHO I;  2GIV A;  2QQC A;  3QTL D;  5FUY A;  2FNF X;  1MT1 A;  3SGB I;  4AML A;  5HQ8 A;  1ULM A;  1TBQ R;  2J87 A;  2V53 A;  3TO7 A;  3VDP A;  1MJB A;  2ELI A;  1SGE I;  1LR7 A;  2DIP A;  2N17 A;  3D00 A;  1MJA A;  3TJQ A;  2B0U C;  3B4V C;  3E59 A;  2W0T A;  1CT2 I;  2QPO A;  2RIJ A;  1H0Z A;  1SGD I;  1IY5 A;  3R5B A;  3R5C A;  4SGB I;  1BUS A;  5CCL A;  1P9Z A;  5FUX A;  1MJ9 A;  2CWG A;  2L7X A;  1OYV I;  1FYB A;  4E1P A;  2OZU A;  1RFH A;  2L8E A;  2DB6 A;  3VE5 A;  1TUS A;  1Z2I A;  2NU3 I;  5E3Q A;  1UVF A;  2M5X A;  2JA1 A;  1SGQ I;  3R5A A;  1HJA I;  3TOB A;  1PTR A;  2KMQ A;  2VRW B;  3R5D A;  1WGC A;  1UUC A;  1X74 A;  3QWP A;  3SEK C;  3UFF A;  1KBF A;  1M8C A;  1LR8 A;  1KBE A;  2KMO A;  1X4S A;  1TBR R;  3TOA A;  1WKX A;  3UEY A;  1XA6 A;  2LEO A;  1AN1 I;  1DS3 I;  2NU1 I;  1OMT A;  3VDU A;  1TUR A;  5CCM A;  7WGA A;  4MPI A;  2GKT I;  4GI3 C;  2E5R A;  2XRC A;  4UXJ A;  2DKV A;  3UOE A;  5E3R A;  3CXL A;  2OU2 A;  2RC4 A;  1OVO A;  4WP4 A;  2V1C A;  2Y0M A;  3FSY A;  3KY9 A;  1XBT A;  1K7T A;  3RU0 A;  1K7V A;  3E2I A;  3OVO A;  4UXI A;  3OL0 A;  3FC3 A;  2K9H A;  5FUW A;  3SGQ I;  4E1R A;  2GVI A;  2X3T A;  1UVG A;  1XX6 A;  1YTP A;  2N52 A;  1PJU A;  2A20 A;  2KCX A;  2J9R A;  5JHW C;  4FKD A;  2JXD A;  2OVO A;  2QQD A;  2ORV A;  2NU0 I;  1CT0 I; 
#chains in the Genus database with same CATH homology
 1UHA A;  1WKX A;  2UVO A;  1ULN A;  1WGT A;  7WGA A;  1ULK A;  4MPI A;  1P9Z A;  2DKV A;  2CWG A;  4WP4 A;  1HEV A;  1K7T A;  1K7V A;  1K7U A;  9WGA A;  1P9G A;  2LB7 A;  2X3T A;  1WGC A;  1Q9B A;  2WGC A;  4AML A;  1ULM A;  2X52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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