1LISA

The crystal structure of a fertilization protein
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
131
structure length
131
Chain Sequence
HYVEPKFLNKAFEVALKVQIIAGFDRGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYLPYMEEINRMRPADVPVKYM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Fertilization protein
molecule keywords LYSIN
publication title The crystal structure of lysin, a fertilization protein.
pubmed rcsb
source organism Haliotis rufescens
total genus 44
structure length 131
sequence length 131
ec nomenclature
pdb deposition date 1993-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01303 Egg_lysin Egg lysin (Sperm-lysin)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.150.10 Mainly Alpha Up-down Bundle Lysin Fertilization protein 1lisA00
1LYNA 1GAKA 1LISA 3LYNA 2LISA 2LYNA
chains in the Genus database with same CATH superfamily
1LYNA 3OE7A 1OHHA 4Z1MA 2WPDA 2CK3A 1COWA 1H8EA 5CDFA 1KMHA 2XNDA 3ZIAA 4ASUA 1E79A 3FKSA 5FL7A 3OEEA 2LISA 1NBMA 2JJ2A 2R9VA 2JIZA 4TSFA 1FX0A 2JJ1A 1BMFA 1W0KA 1MABA 2HLDA 2WSSA 5DN6A 1EFRA 1GAKA 1LISA 3OAAA 1E1QA 3LYNA 2JDIA 2W6IA 3OEHA 2LYNA 2XOKA 4XD7A 4TT3A 2F43A 1SKYB 1H8HA 1E1RA 4YXWA 3CMNA 2QE7A 3OFNA 2W6JA 2V7QA 1W0JA
chains in the Genus database with same CATH topology
1LYNA 1GAKA 1LISA 3LYNA 2LISA 2LYNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LYN A;  1GAK A;  1LIS A;  3LYN A;  2LIS A;  2LYN A; 
#chains in the Genus database with same CATH topology
 1LYN A;  3OE7 A;  1OHH A;  4Z1M A;  2WPD A;  2CK3 A;  1COW A;  1H8E A;  5CDF A;  1KMH A;  2XND A;  3ZIA A;  4ASU A;  1E79 A;  3FKS A;  5FL7 A;  3OEE A;  2LIS A;  1NBM A;  2JJ2 A;  2R9V A;  2JIZ A;  4TSF A;  1FX0 A;  2JJ1 A;  1BMF A;  1W0K A;  1MAB A;  2HLD A;  2WSS A;  5DN6 A;  1EFR A;  1GAK A;  1LIS A;  3OAA A;  1E1Q A;  3LYN A;  2JDI A;  2W6I A;  3OEH A;  2LYN A;  2XOK A;  4XD7 A;  4TT3 A;  2F43 A;  1SKY B;  1H8H A;  1E1R A;  4YXW A;  3CMN A;  2QE7 A;  3OFN A;  2W6J A;  2V7Q A;  1W0J A; 
#chains in the Genus database with same CATH homology
 1LYN A;  1GAK A;  1LIS A;  3LYN A;  2LIS A;  2LYN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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