1LNGA

Crystal structure of the srp19-7s.s srp rna complex of m. jannaschii
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
87
structure length
87
Chain Sequence
MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKEICKIIKGKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 7S.S SRP RNA
publication title Structure of the SRP19 RNA complex and implications for signal recognition particle assembly.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 24
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2002-05-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 1lngA00
1KVNA 3DLUA 3KTWA 5M73B 3DLVA 4P3EB 1KVVA 3KTVB 2V3CA 1JIDA 1LNGA 1L9AA 1MFQB 4XCOA 3NDBA
chains in the Genus database with same CATH superfamily
4TVAB 2AMCB 2LQ3A 1JJCB 2DULA 3AXSA 4DDVA 3AXTA 4P74A 1PYSB 4XCOA 4P75A 3NDBA 1B70B 2RHSB 1KVNA 3KTWA 2HG7A 4P72A 1KVVA 2CXIA 2V3CA 4P73A 1L9AA 1B7YB 2RHQB 2EJTA 3DLUA 4P3EB 3PCOB 4DDTA 3KTVB 4DDWA 3TEHB 4P71A 1ND9A 2ALYB 5M73B 3DLVA 2IY5B 2EJUA 1MFQB 1JIDA 1LNGA 2AKWB 3L4GB 4IOHA 1EIYB 4DDUA 3HFZB 3USHA 2YTZA
chains in the Genus database with same CATH topology
1KVNA 3DLUA 3KTWA 5M73B 3DLVA 4P3EB 1KVVA 3KTVB 2V3CA 1JIDA 1LNGA 1L9AA 1MFQB 4XCOA 3NDBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KVN A;  3DLU A;  3KTW A;  5M73 B;  3DLV A;  4P3E B;  1KVV A;  3KTV B;  2V3C A;  1JID A;  1LNG A;  1L9A A;  1MFQ B;  4XCO A;  3NDB A; 
#chains in the Genus database with same CATH topology
 4TVA B;  2AMC B;  2LQ3 A;  1JJC B;  2DUL A;  3AXS A;  4DDV A;  3AXT A;  4P74 A;  1PYS B;  4XCO A;  4P75 A;  3NDB A;  1B70 B;  2RHS B;  1KVN A;  3KTW A;  2HG7 A;  4P72 A;  1KVV A;  2CXI A;  2V3C A;  4P73 A;  1L9A A;  1B7Y B;  2RHQ B;  2EJT A;  3DLU A;  4P3E B;  3PCO B;  4DDT A;  3KTV B;  4DDW A;  3TEH B;  4P71 A;  1ND9 A;  2ALY B;  5M73 B;  3DLV A;  2IY5 B;  2EJU A;  1MFQ B;  1JID A;  1LNG A;  2AKW B;  3L4G B;  4IOH A;  1EIY B;  4DDU A;  3HFZ B;  3USH A;  2YTZ A; 
#chains in the Genus database with same CATH homology
 1KVN A;  3DLU A;  3KTW A;  5M73 B;  3DLV A;  4P3E B;  1KVV A;  3KTV B;  2V3C A;  1JID A;  1LNG A;  1L9A A;  1MFQ B;  4XCO A;  3NDB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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