1M6XC

Flpe-holliday junction complex
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase, lyase/dna
molecule keywords Symmetrized FRT site
publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
1PVQA 3MGVA 2CRXA 1Z19A 1XNSA 4DKSA 1P7DA 2A3VA 2HOIA 1Q3UA 5DORA 1PVRA 3C28A 5CRXA 1NZBA 1AE9A 1MA7A 1A0PA 2HOFA 1FLOA 5C6KA 3CRXA 4A8EA 3C29A 1Q3VA 3NKHA 1M6XC 1XO0A 1P4EC 3UXUA 1AIHA 1M6XA 1P4EA 1KBUA 1CRXA 5DCFA 4CRXA 1PVPA 3VCFA 1F44A 1OUQA 1DRGA 1Z1BA
chains in the Genus database with same CATH superfamily
3PROC 3T1HC 4PUHA 2HOIA 2P20A 1XNRC 4LE5A 4DG9A 3DAYA 2AYAA 5CZVA 4HPVA 1EGAA 1O92A 1IBMC 2D7VA 2YWCA 2UXBC 2P02A 4ODJA 4CRXA 4MH4A 3L95X 2Y27A 1IBKC 1XNSA 2UUBC 2PT7G 3SQIA 4YHHC 3R9XA 1N2FA 1N34C 2E8EA 4OX9C 2PROA 2UUAC 1FLOA 3FCEA 4X66C 4RVNA 3AF5A 3TR3A 3H2TA 5GTDA 4JYAC 4PROC 4PUIA 4RM2A 4LFCC 4GS5A 2KDNA 2ZZMA 4GKJC 2M5HA 5T8TA 4LF8C 4EATA 2VQEC 3E7XA 1MKYA 1XNQC 2HOFA 2ONFA 4E0ZA 1Q3VA 4ZJZA 3LUSA 2ZZNA 4GKKC 3A25A 4NDNA 1PVQA 3EQ6A 4F41A 3NPDA 3NYRA 1NY8A 4WV3A 1WCJA 3EERA 3AF6A 4JI8C 4L2ZA 2VSQA 4B3SC 3NYQA 3PESA 1NYEA 3CRXA 2PN2A 4B3TC 1PU1A 1P4EC 3GR1A 4X65C 2YX1A 3O2EA 1WF3A 1XRAA 3GKUA 2UUCC 4DR4C 4DV2C 4LF4C 4K0BA 1RG9A 3ETOA 4OYCA 2UXCC 4NOZA 1LQLA 1IBLC 4JI5C 3IMLA 1NZBA 1AE9A 3VNSA 1USPA 2HHHC 4DV4C 3C5EA 1N33C 3J81D 5BUSA 5BSWA 3N2QA 2D1RA 4FTFA 2D1SA 2QVXX 3MGVA 2DYJA 2JMPA 4OXIA 5AE3A 4DCSA 4RM3A 3KXWA 2P2BA 3S82A 3C28A 2KZ0A 2QL8A 1QM4A 4G37A 5BSRA 1V26A 4RLFA 3DLPX 3LGXA 4NXMC 5LMNC 1XS3A 5BURA 4JI2C 1USPB 2M5OA 4MTNA 4JV5C 2CU6A 1XHJA 1CRXA 5BSVA 3IEUA 3JAMD 5BSTA 1Z1BA 4R1LA 3RV2A 1XMQC 1HNZC 4GXRA 2P2QA 1QWIA 3N54B 1MD9A 4WS9A 2WP0C 2YWBA 3E7WA 1T5DX 4E0YA 5CZXA 3G7SA 5A2QD 4LFAC 4YY3C 2E7GA 3A9UA 4KTTA 3UOWA 4DV0C 3IPLA 5C6KA 1UWDA 3T1YC 4DUZC 3UXUA 4BC9A 4TPSB 5KYTA 2E5LC 4D56A 3T79A 4DR6C 3R9WA 2ASBA 5E7QA 2OBVA 5KYVA 5LCIA 2P2MA 1MDBA 4DV5C 3CQ3A 4E0JA 2VZEA 5K8FA 2WD9A 4R1MA 4JM1A 4DR1C 2E8FA 4ZLPA 4LF9C 2DPLA 4ACOA 3GPCA 4KHPC 4PHTA 3AY0A 3SO4A 5JRHA 1HH2P 1PG3A 1XMOC 2E0GA 1XO0A 3LNVA 4IR7A 2QW0X 5ADZA 2UU9C 2CXCA 4LFBC 1F44A 1KKGA 3I08A 2HJGA 1O9TA 4DV1C 2D28C 1J5EC 2D27A 2XR1A 3CJEA 4DCTA 4DR3C 1MA7A 3K6RA 1O90A 3UZ0A 1M6XA 1AIHA 2Z51A 1VLAA 4F43A 1WH9A 1V25A 1YJ7A 2Y4OA 4JI6C 3I07A 2ZM6C 2ATWA 1ZB9A 3A26A 2QVYX 4G1IA 1PG4A 2V6EA 4RMNA 4JI7C 4E0GA 3CW9A 3UX2A 2MMAB 1RY2A 1Z19A 4RVOA 4DKSA 1P7DA 2V7BA 2F4VC 1Q3UA 3FCCA 3TUFA 1PVRA 1ULTA 4FUQA 2QVZX 1IB8A 1ML8A 4BCAA 1T5HX 5A1IA 2CY1A 4A8EA 2OPLA 4B3MC 5DCFA 1PVPA 4LF5C 3LNOA 1OUQA 3CQ1A 4D4IA 5IWAC 4DR2C 2JNVA 4ISBA 3GR0A 2MM9A 4DR7C 4DWPA 1MXAA 1XRBA 5IT9D 4NXNC 4GXQA 1A0PA 1VEHA 4L7IA 4E0PA 3TQIA 1P7LA 3A4IA 4IZ6A 1JOSA 2OPLB 3RG2A 1HNWC 1DRGA 4D4GA 5AE2A 2P2FA 5DV9A 2YCBA 3ETCA 4PZPA 4KTVA 3VNQA 4K0KC 1HNXC 5FLXD 4JI0C 1AMUA 1HR0C 4U5YD 4DR5C 1MDFA 5BSMA 4JI3C 1V60A 4BSZA 4FUTA 4XX2A 4BBYA 4LF6C 4LF7C 2Y4NA 4DCVA 5K85A 5A1GA 1XRCA 4DV6C 1PA4A 3PBKA 3L8CA 5BSUA 4E10A 3OTOC 3C29A 1M6XC 5BUQA 2OO4A 5BR8C 5AE1A 3VCFA 3LAXA 4X62C 3A9VA 3IEVA 3J80D 2D1TA 2UXDC 4X64C 2BJOA 4I9GA 2VQFC 3UEBA 3NI2A 1K0RA 2P2JA 3UX3A 5IFIA 4RLQA 1TH5A 1I94C 1BA3A 3CQ2A 1MXCA 2NCLA 5A19A 4DCUA 4DG8A 2KZFA 1P4EA 3VNRA 2E8CA 1GPMA 4JI1C 4DV7C 4JI4C 1N32C 4I9FA 2EGTA 2DHMA 2MCQA 4D57A 4AQYC 2CRXA 1FJGC 3CW8X 4PUGA 1O93A 2A3VA 5LMUC 3B7WA 5DORA 1N36C 1UKKA 4B3RC 5CRXA 4DUYC 3R44A 4L4QA 4G36A 1MXBA 4R0MA 1LCIA 1L2FA 1KBUA 3NKHA 5T8SA 2D1QA 3DHVA 4BC7A 3TDEA 2BH1X 1FUGA 4DV3C 5KEIA 5H9UA 1ZB8A
chains in the Genus database with same CATH topology
1PVQA 3MGVA 2CRXA 1Z19A 1XNSA 4DKSA 1P7DA 2A3VA 2HOIA 1Q3UA 5DORA 1PVRA 3C28A 5CRXA 1NZBA 1AE9A 1MA7A 1A0PA 2HOFA 1FLOA 5C6KA 3CRXA 4A8EA 3C29A 1Q3VA 3NKHA 1M6XC 1XO0A 1P4EC 3UXUA 1AIHA 1M6XA 1P4EA 1KBUA 1CRXA 5DCFA 4CRXA 1PVPA 3VCFA 1F44A 1OUQA 1DRGA 1Z1BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PVQ A;  3MGV A;  2CRX A;  1Z19 A;  1XNS A;  4DKS A;  1P7D A;  2A3V A;  2HOI A;  1Q3U A;  5DOR A;  1PVR A;  3C28 A;  5CRX A;  1NZB A;  1AE9 A;  1MA7 A;  1A0P A;  2HOF A;  1FLO A;  5C6K A;  3CRX A;  4A8E A;  3C29 A;  1Q3V A;  3NKH A;  1M6X C;  1XO0 A;  1P4E C;  3UXU A;  1AIH A;  1M6X A;  1P4E A;  1KBU A;  1CRX A;  5DCF A;  4CRX A;  1PVP A;  3VCF A;  1F44 A;  1OUQ A;  1DRG A;  1Z1B A; 
#chains in the Genus database with same CATH topology
 3PRO C;  3T1H C;  4PUH A;  2HOI A;  2P20 A;  1XNR C;  4LE5 A;  4DG9 A;  3DAY A;  2AYA A;  5CZV A;  4HPV A;  1EGA A;  1O92 A;  1IBM C;  2D7V A;  2YWC A;  2UXB C;  2P02 A;  4ODJ A;  4CRX A;  4MH4 A;  3L95 X;  2Y27 A;  1IBK C;  1XNS A;  2UUB C;  2PT7 G;  3SQI A;  4YHH C;  3R9X A;  1N2F A;  1N34 C;  2E8E A;  4OX9 C;  2PRO A;  2UUA C;  1FLO A;  3FCE A;  4X66 C;  4RVN A;  3AF5 A;  3TR3 A;  3H2T A;  5GTD A;  4JYA C;  4PRO C;  4PUI A;  4RM2 A;  4LFC C;  4GS5 A;  2KDN A;  2ZZM A;  4GKJ C;  2M5H A;  5T8T A;  4LF8 C;  4EAT A;  2VQE C;  3E7X A;  1MKY A;  1XNQ C;  2HOF A;  2ONF A;  4E0Z A;  1Q3V A;  4ZJZ A;  3LUS A;  2ZZN A;  4GKK C;  3A25 A;  4NDN A;  1PVQ A;  3EQ6 A;  4F41 A;  3NPD A;  3NYR A;  1NY8 A;  4WV3 A;  1WCJ A;  3EER A;  3AF6 A;  4JI8 C;  4L2Z A;  2VSQ A;  4B3S C;  3NYQ A;  3PES A;  1NYE A;  3CRX A;  2PN2 A;  4B3T C;  1PU1 A;  1P4E C;  3GR1 A;  4X65 C;  2YX1 A;  3O2E A;  1WF3 A;  1XRA A;  3GKU A;  2UUC C;  4DR4 C;  4DV2 C;  4LF4 C;  4K0B A;  1RG9 A;  3ETO A;  4OYC A;  2UXC C;  4NOZ A;  1LQL A;  1IBL C;  4JI5 C;  3IML A;  1NZB A;  1AE9 A;  3VNS A;  1USP A;  2HHH C;  4DV4 C;  3C5E A;  1N33 C;  3J81 D;  5BUS A;  5BSW A;  3N2Q A;  2D1R A;  4FTF A;  2D1S A;  2QVX X;  3MGV A;  2DYJ A;  2JMP A;  4OXI A;  5AE3 A;  4DCS A;  4RM3 A;  3KXW A;  2P2B A;  3S82 A;  3C28 A;  2KZ0 A;  2QL8 A;  1QM4 A;  4G37 A;  5BSR A;  1V26 A;  4RLF A;  3DLP X;  3LGX A;  4NXM C;  5LMN C;  1XS3 A;  5BUR A;  4JI2 C;  1USP B;  2M5O A;  4MTN A;  4JV5 C;  2CU6 A;  1XHJ A;  1CRX A;  5BSV A;  3IEU A;  3JAM D;  5BST A;  1Z1B A;  4R1L A;  3RV2 A;  1XMQ C;  1HNZ C;  4GXR A;  2P2Q A;  1QWI A;  3N54 B;  1MD9 A;  4WS9 A;  2WP0 C;  2YWB A;  3E7W A;  1T5D X;  4E0Y A;  5CZX A;  3G7S A;  5A2Q D;  4LFA C;  4YY3 C;  2E7G A;  3A9U A;  4KTT A;  3UOW A;  4DV0 C;  3IPL A;  5C6K A;  1UWD A;  3T1Y C;  4DUZ C;  3UXU A;  4BC9 A;  4TPS B;  5KYT A;  2E5L C;  4D56 A;  3T79 A;  4DR6 C;  3R9W A;  2ASB A;  5E7Q A;  2OBV A;  5KYV A;  5LCI A;  2P2M A;  1MDB A;  4DV5 C;  3CQ3 A;  4E0J A;  2VZE A;  5K8F A;  2WD9 A;  4R1M A;  4JM1 A;  4DR1 C;  2E8F A;  4ZLP A;  4LF9 C;  2DPL A;  4ACO A;  3GPC A;  4KHP C;  4PHT A;  3AY0 A;  3SO4 A;  5JRH A;  1HH2 P;  1PG3 A;  1XMO C;  2E0G A;  1XO0 A;  3LNV A;  4IR7 A;  2QW0 X;  5ADZ A;  2UU9 C;  2CXC A;  4LFB C;  1F44 A;  1KKG A;  3I08 A;  2HJG A;  1O9T A;  4DV1 C;  2D28 C;  1J5E C;  2D27 A;  2XR1 A;  3CJE A;  4DCT A;  4DR3 C;  1MA7 A;  3K6R A;  1O90 A;  3UZ0 A;  1M6X A;  1AIH A;  2Z51 A;  1VLA A;  4F43 A;  1WH9 A;  1V25 A;  1YJ7 A;  2Y4O A;  4JI6 C;  3I07 A;  2ZM6 C;  2ATW A;  1ZB9 A;  3A26 A;  2QVY X;  4G1I A;  1PG4 A;  2V6E A;  4RMN A;  4JI7 C;  4E0G A;  3CW9 A;  3UX2 A;  2MMA B;  1RY2 A;  1Z19 A;  4RVO A;  4DKS A;  1P7D A;  2V7B A;  2F4V C;  1Q3U A;  3FCC A;  3TUF A;  1PVR A;  1ULT A;  4FUQ A;  2QVZ X;  1IB8 A;  1ML8 A;  4BCA A;  1T5H X;  5A1I A;  2CY1 A;  4A8E A;  2OPL A;  4B3M C;  5DCF A;  1PVP A;  4LF5 C;  3LNO A;  1OUQ A;  3CQ1 A;  4D4I A;  5IWA C;  4DR2 C;  2JNV A;  4ISB A;  3GR0 A;  2MM9 A;  4DR7 C;  4DWP A;  1MXA A;  1XRB A;  5IT9 D;  4NXN C;  4GXQ A;  1A0P A;  1VEH A;  4L7I A;  4E0P A;  3TQI A;  1P7L A;  3A4I A;  4IZ6 A;  1JOS A;  2OPL B;  3RG2 A;  1HNW C;  1DRG A;  4D4G A;  5AE2 A;  2P2F A;  5DV9 A;  2YCB A;  3ETC A;  4PZP A;  4KTV A;  3VNQ A;  4K0K C;  1HNX C;  5FLX D;  4JI0 C;  1AMU A;  1HR0 C;  4U5Y D;  4DR5 C;  1MDF A;  5BSM A;  4JI3 C;  1V60 A;  4BSZ A;  4FUT A;  4XX2 A;  4BBY A;  4LF6 C;  4LF7 C;  2Y4N A;  4DCV A;  5K85 A;  5A1G A;  1XRC A;  4DV6 C;  1PA4 A;  3PBK A;  3L8C A;  5BSU A;  4E10 A;  3OTO C;  3C29 A;  1M6X C;  5BUQ A;  2OO4 A;  5BR8 C;  5AE1 A;  3VCF A;  3LAX A;  4X62 C;  3A9V A;  3IEV A;  3J80 D;  2D1T A;  2UXD C;  4X64 C;  2BJO A;  4I9G A;  2VQF C;  3UEB A;  3NI2 A;  1K0R A;  2P2J A;  3UX3 A;  5IFI A;  4RLQ A;  1TH5 A;  1I94 C;  1BA3 A;  3CQ2 A;  1MXC A;  2NCL A;  5A19 A;  4DCU A;  4DG8 A;  2KZF A;  1P4E A;  3VNR A;  2E8C A;  1GPM A;  4JI1 C;  4DV7 C;  4JI4 C;  1N32 C;  4I9F A;  2EGT A;  2DHM A;  2MCQ A;  4D57 A;  4AQY C;  2CRX A;  1FJG C;  3CW8 X;  4PUG A;  1O93 A;  2A3V A;  5LMU C;  3B7W A;  5DOR A;  1N36 C;  1UKK A;  4B3R C;  5CRX A;  4DUY C;  3R44 A;  4L4Q A;  4G36 A;  1MXB A;  4R0M A;  1LCI A;  1L2F A;  1KBU A;  3NKH A;  5T8S A;  2D1Q A;  3DHV A;  4BC7 A;  3TDE A;  2BH1 X;  1FUG A;  4DV3 C;  5KEI A;  5H9U A;  1ZB8 A; 
#chains in the Genus database with same CATH homology
 1PVQ A;  3MGV A;  2CRX A;  1Z19 A;  1XNS A;  4DKS A;  1P7D A;  2A3V A;  2HOI A;  1Q3U A;  5DOR A;  1PVR A;  3C28 A;  5CRX A;  1NZB A;  1AE9 A;  1MA7 A;  1A0P A;  2HOF A;  1FLO A;  5C6K A;  3CRX A;  4A8E A;  3C29 A;  1Q3V A;  3NKH A;  1M6X C;  1XO0 A;  1P4E C;  3UXU A;  1AIH A;  1M6X A;  1P4E A;  1KBU A;  1CRX A;  5DCF A;  4CRX A;  1PVP A;  3VCF A;  1F44 A;  1OUQ A;  1DRG A;  1Z1B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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