1MDAL

Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
121
structure length
120
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIAGNICDCSAGSLTSCPPGTLVASGSVGSCYNPPDPNKYITAYRDCCGYNVSGRCACLNTEGELPVYNKDANDIIWCFGGEDGMTYHCSISPVSGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)
publication title Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin.
pubmed doi rcsb
source organism Paracoccus denitrificans
total genus 26
structure length 120
sequence length 121
chains with identical sequence M
ec nomenclature ec 1.4.99.3: Transferred entry: 1.4.9.1.
pdb deposition date 1992-03-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 1mdaL00
2AGXD 1MAEL 2Q7QD 3RMZC 4FA4C 2IUVD 2IUPD 4FA1C 2AH1D 2AGYD 2MTAL 4L3GC 2IAAB 1MG2B 4FAVC 2IURD 4Y5RC 2OIZD 3RN0C 3L4MC 2H47B 4FA9C 2I0RD 3SJLC 4L1QC 3SVWC 4FB1C 2MADL 4L3HC 4FANC 2IUQD 3PXSC 2J57K 2OJYD 3SWSC 2AGLD 3SLEC 4FA5C 2HJ4D 2OK6D 3PXTC 4O1QC 3PXWC 3C75L 3RLMC 2HJBD 2H3XB 3L4OC 2AGZD 1MDAL 2J56L 1MG3B 2I0TD 3SXTC 1MAFL 3ORVC 4K3IC 2OK4D 2J55L 2HKMD 2GC4B 2HKRD 2AGWD 2AH0D 3RN1C 2HXCD 2I0SD 2GC7B 2BBKL
chains in the Genus database with same CATH superfamily
2AGXD 1MAEL 2Q7QD 3RMZC 4FA4C 2IUVD 2IUPD 4FA1C 2AH1D 2AGYD 2MTAL 4L3GC 2IAAB 1MG2B 4FAVC 2IURD 4Y5RC 2OIZD 3RN0C 3L4MC 2H47B 4FA9C 2I0RD 3SJLC 4L1QC 3SVWC 4FB1C 2MADL 4L3HC 4FANC 2IUQD 3PXSC 2J57K 2OJYD 3SWSC 2AGLD 3SLEC 4FA5C 2HJ4D 2OK6D 3PXTC 4O1QC 3PXWC 3C75L 3RLMC 2HJBD 2H3XB 3L4OC 2AGZD 1MDAL 2J56L 1MG3B 2I0TD 3SXTC 1MAFL 3ORVC 4K3IC 2OK4D 2J55L 2HKMD 2GC4B 2HKRD 2AGWD 2AH0D 3RN1C 2HXCD 2I0SD 2GC7B 2BBKL
chains in the Genus database with same CATH topology
2AGXD 1MAEL 2Q7QD 3RMZC 4FA4C 2IUVD 2IUPD 4FA1C 2AH1D 2AGYD 2MTAL 4L3GC 2IAAB 1MG2B 4FAVC 2IURD 4Y5RC 2OIZD 3RN0C 3L4MC 2H47B 4FA9C 2I0RD 3SJLC 4L1QC 3SVWC 4FB1C 2MADL 4L3HC 4FANC 2IUQD 3PXSC 2J57K 2OJYD 3SWSC 2AGLD 3SLEC 4FA5C 2HJ4D 2OK6D 3PXTC 4O1QC 3PXWC 3C75L 3RLMC 2HJBD 2H3XB 3L4OC 2AGZD 1MDAL 2J56L 1MG3B 2I0TD 3SXTC 1MAFL 3ORVC 4K3IC 2OK4D 2J55L 2HKMD 2GC4B 2HKRD 2AGWD 2AH0D 3RN1C 2HXCD 2I0SD 2GC7B 2BBKL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AGX D;  1MAE L;  2Q7Q D;  3RMZ C;  4FA4 C;  2IUV D;  2IUP D;  4FA1 C;  2AH1 D;  2AGY D;  2MTA L;  4L3G C;  2IAA B;  1MG2 B;  4FAV C;  2IUR D;  4Y5R C;  2OIZ D;  3RN0 C;  3L4M C;  2H47 B;  4FA9 C;  2I0R D;  3SJL C;  4L1Q C;  3SVW C;  4FB1 C;  2MAD L;  4L3H C;  4FAN C;  2IUQ D;  3PXS C;  2J57 K;  2OJY D;  3SWS C;  2AGL D;  3SLE C;  4FA5 C;  2HJ4 D;  2OK6 D;  3PXT C;  4O1Q C;  3PXW C;  3C75 L;  3RLM C;  2HJB D;  2H3X B;  3L4O C;  2AGZ D;  1MDA L;  2J56 L;  1MG3 B;  2I0T D;  3SXT C;  1MAF L;  3ORV C;  4K3I C;  2OK4 D;  2J55 L;  2HKM D;  2GC4 B;  2HKR D;  2AGW D;  2AH0 D;  3RN1 C;  2HXC D;  2I0S D;  2GC7 B;  2BBK L; 
#chains in the Genus database with same CATH topology
 2AGX D;  1MAE L;  2Q7Q D;  3RMZ C;  4FA4 C;  2IUV D;  2IUP D;  4FA1 C;  2AH1 D;  2AGY D;  2MTA L;  4L3G C;  2IAA B;  1MG2 B;  4FAV C;  2IUR D;  4Y5R C;  2OIZ D;  3RN0 C;  3L4M C;  2H47 B;  4FA9 C;  2I0R D;  3SJL C;  4L1Q C;  3SVW C;  4FB1 C;  2MAD L;  4L3H C;  4FAN C;  2IUQ D;  3PXS C;  2J57 K;  2OJY D;  3SWS C;  2AGL D;  3SLE C;  4FA5 C;  2HJ4 D;  2OK6 D;  3PXT C;  4O1Q C;  3PXW C;  3C75 L;  3RLM C;  2HJB D;  2H3X B;  3L4O C;  2AGZ D;  1MDA L;  2J56 L;  1MG3 B;  2I0T D;  3SXT C;  1MAF L;  3ORV C;  4K3I C;  2OK4 D;  2J55 L;  2HKM D;  2GC4 B;  2HKR D;  2AGW D;  2AH0 D;  3RN1 C;  2HXC D;  2I0S D;  2GC7 B;  2BBK L; 
#chains in the Genus database with same CATH homology
 2AGX D;  1MAE L;  2Q7Q D;  3RMZ C;  4FA4 C;  2IUV D;  2IUP D;  4FA1 C;  2AH1 D;  2AGY D;  2MTA L;  4L3G C;  2IAA B;  1MG2 B;  4FAV C;  2IUR D;  4Y5R C;  2OIZ D;  3RN0 C;  3L4M C;  2H47 B;  4FA9 C;  2I0R D;  3SJL C;  4L1Q C;  3SVW C;  4FB1 C;  2MAD L;  4L3H C;  4FAN C;  2IUQ D;  3PXS C;  2J57 K;  2OJY D;  3SWS C;  2AGL D;  3SLE C;  4FA5 C;  2HJ4 D;  2OK6 D;  3PXT C;  4O1Q C;  3PXW C;  3C75 L;  3RLM C;  2HJB D;  2H3X B;  3L4O C;  2AGZ D;  1MDA L;  2J56 L;  1MG3 B;  2I0T D;  3SXT C;  1MAF L;  3ORV C;  4K3I C;  2OK4 D;  2J55 L;  2HKM D;  2GC4 B;  2HKR D;  2AGW D;  2AH0 D;  3RN1 C;  2HXC D;  2I0S D;  2GC7 B;  2BBK L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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