1MG3B

Mutation of alpha phe55 of methylamine dehydrogenase alters the reorganization energy and electronic coupling for its electron transfer reaction with amicyanin
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords Methylamine dehydrogenase, heavy chain
publication title MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN
pubmed doi rcsb
source organism Paracoccus denitrificans
total genus 30
structure length 124
sequence length 125
chains with identical sequence F, J, N
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2002-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 1mg3B00
1MG3B 4FB1C 4FA5C 2OK6D 2MTAL 3SLEC 1MDAL 2AGWD 2AH1D 2HKMD 2GC7B 2HJBD 2OK4D 2OIZD 3SXTC 4K3IC 2AGLD 3ORVC 2J55L 4FA1C 2HXCD 1MAEL 4Y5RC 2H3XB 2OJYD 2HJ4D 2H47B 3PXWC 3RN0C 2I0TD 2BBKL 4FA9C 3PXSC 2IAAB 3L4OC 4O1QC 2J57K 2Q7QD 2IURD 3RN1C 4FAVC 2AH0D 3SWSC 4L1QC 3PXTC 4FA4C 2HKRD 3C75L 3RMZC 2MADL 3SVWC 4FANC 2J56L 4L3HC 1MAFL 2AGYD 4L3GC 2AGZD 2IUVD 2GC4B 3RLMC 2I0SD 3SJLC 1MG2B 2IUPD 2IUQD 2AGXD 2I0RD 3L4MC
chains in the Genus database with same CATH superfamily
1MG3B 4FB1C 4FA5C 2OK6D 2MTAL 3SLEC 1MDAL 2AGWD 2AH1D 2HKMD 2GC7B 2HJBD 2OK4D 2OIZD 3SXTC 4K3IC 2AGLD 3ORVC 2J55L 4FA1C 2HXCD 1MAEL 4Y5RC 2H3XB 2OJYD 2HJ4D 2H47B 3PXWC 3RN0C 2I0TD 2BBKL 4FA9C 3PXSC 2IAAB 3L4OC 4O1QC 2J57K 2Q7QD 2IURD 3RN1C 4FAVC 2AH0D 3SWSC 4L1QC 3PXTC 4FA4C 2HKRD 3C75L 3RMZC 2MADL 3SVWC 4FANC 2J56L 4L3HC 1MAFL 2AGYD 4L3GC 2AGZD 2IUVD 2GC4B 3RLMC 2I0SD 3SJLC 1MG2B 2IUPD 2IUQD 2AGXD 2I0RD 3L4MC
chains in the Genus database with same CATH topology
1MG3B 4FB1C 4FA5C 2OK6D 2MTAL 3SLEC 1MDAL 2AGWD 2AH1D 2HKMD 2GC7B 2HJBD 2OK4D 2OIZD 3SXTC 4K3IC 2AGLD 3ORVC 2J55L 4FA1C 2HXCD 1MAEL 4Y5RC 2H3XB 2OJYD 2HJ4D 2H47B 3PXWC 3RN0C 2I0TD 2BBKL 4FA9C 3PXSC 2IAAB 3L4OC 4O1QC 2J57K 2Q7QD 2IURD 3RN1C 4FAVC 2AH0D 3SWSC 4L1QC 3PXTC 4FA4C 2HKRD 3C75L 3RMZC 2MADL 3SVWC 4FANC 2J56L 4L3HC 1MAFL 2AGYD 4L3GC 2AGZD 2IUVD 2GC4B 3RLMC 2I0SD 3SJLC 1MG2B 2IUPD 2IUQD 2AGXD 2I0RD 3L4MC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MG3 B;  4FB1 C;  4FA5 C;  2OK6 D;  2MTA L;  3SLE C;  1MDA L;  2AGW D;  2AH1 D;  2HKM D;  2GC7 B;  2HJB D;  2OK4 D;  2OIZ D;  3SXT C;  4K3I C;  2AGL D;  3ORV C;  2J55 L;  4FA1 C;  2HXC D;  1MAE L;  4Y5R C;  2H3X B;  2OJY D;  2HJ4 D;  2H47 B;  3PXW C;  3RN0 C;  2I0T D;  2BBK L;  4FA9 C;  3PXS C;  2IAA B;  3L4O C;  4O1Q C;  2J57 K;  2Q7Q D;  2IUR D;  3RN1 C;  4FAV C;  2AH0 D;  3SWS C;  4L1Q C;  3PXT C;  4FA4 C;  2HKR D;  3C75 L;  3RMZ C;  2MAD L;  3SVW C;  4FAN C;  2J56 L;  4L3H C;  1MAF L;  2AGY D;  4L3G C;  2AGZ D;  2IUV D;  2GC4 B;  3RLM C;  2I0S D;  3SJL C;  1MG2 B;  2IUP D;  2IUQ D;  2AGX D;  2I0R D;  3L4M C; 
#chains in the Genus database with same CATH topology
 1MG3 B;  4FB1 C;  4FA5 C;  2OK6 D;  2MTA L;  3SLE C;  1MDA L;  2AGW D;  2AH1 D;  2HKM D;  2GC7 B;  2HJB D;  2OK4 D;  2OIZ D;  3SXT C;  4K3I C;  2AGL D;  3ORV C;  2J55 L;  4FA1 C;  2HXC D;  1MAE L;  4Y5R C;  2H3X B;  2OJY D;  2HJ4 D;  2H47 B;  3PXW C;  3RN0 C;  2I0T D;  2BBK L;  4FA9 C;  3PXS C;  2IAA B;  3L4O C;  4O1Q C;  2J57 K;  2Q7Q D;  2IUR D;  3RN1 C;  4FAV C;  2AH0 D;  3SWS C;  4L1Q C;  3PXT C;  4FA4 C;  2HKR D;  3C75 L;  3RMZ C;  2MAD L;  3SVW C;  4FAN C;  2J56 L;  4L3H C;  1MAF L;  2AGY D;  4L3G C;  2AGZ D;  2IUV D;  2GC4 B;  3RLM C;  2I0S D;  3SJL C;  1MG2 B;  2IUP D;  2IUQ D;  2AGX D;  2I0R D;  3L4M C; 
#chains in the Genus database with same CATH homology
 1MG3 B;  4FB1 C;  4FA5 C;  2OK6 D;  2MTA L;  3SLE C;  1MDA L;  2AGW D;  2AH1 D;  2HKM D;  2GC7 B;  2HJB D;  2OK4 D;  2OIZ D;  3SXT C;  4K3I C;  2AGL D;  3ORV C;  2J55 L;  4FA1 C;  2HXC D;  1MAE L;  4Y5R C;  2H3X B;  2OJY D;  2HJ4 D;  2H47 B;  3PXW C;  3RN0 C;  2I0T D;  2BBK L;  4FA9 C;  3PXS C;  2IAA B;  3L4O C;  4O1Q C;  2J57 K;  2Q7Q D;  2IUR D;  3RN1 C;  4FAV C;  2AH0 D;  3SWS C;  4L1Q C;  3PXT C;  4FA4 C;  2HKR D;  3C75 L;  3RMZ C;  2MAD L;  3SVW C;  4FAN C;  2J56 L;  4L3H C;  1MAF L;  2AGY D;  4L3G C;  2AGZ D;  2IUV D;  2GC4 B;  3RLM C;  2I0S D;  3SJL C;  1MG2 B;  2IUP D;  2IUQ D;  2AGX D;  2I0R D;  3L4M C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...