1MQFA

Compound i from proteus mirabilis catalase
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
476
structure length
475
Chain Sequence
KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Structural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid.
pubmed doi rcsb
total genus 144
structure length 475
sequence length 476
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1mqfA00
4ENPA 3DY5A 3P9RA 4AUNA 3TTUA 1CF9A 1GWEA 2ISAA 1U5UA 4E37A 4BFLA 4QONA 1GGFA 3TTXA 1SY7A 2XF2A 4B2YA 1P7YA 2J2MA 4QOQA 3PQ7A 3PQ8A 1IPHA 1GGJA 3VU3A 1GWHA 1H7KA 4ENUA 4ENQA 3PQ2A 4QOPA 3PQ5A 1QWLA 2CAGA 3EJ6A 4AULA 4ENSA 4ENWA 1HBZA 3TTVA 3PQ3A 1P80A 4B31A 4B7AA 3P9PA 3TTWA 4ENVA 3P9QA 2IQFA 1M7SA 1P7ZA 4AJ9A 1P81A 3PQ4A 3ZJ5A 3PQ6A 4AUMA 1MQFA 4B5KA 1GG9A 1QF7A 1A4EA 1M85A 4ENTA 1QWSA 4QOMA 3TTTA 4BIMA 4ENRA 1NM0A 2IUFA 1GWFA 4QOLA 3P9SA 1F4JA 3HB6A 4B40A 4QOOA 4QORA 2CAHA 1GGHA 1QWMA 1GGKA 2XQ1A 1GGEA 3ZJ4A 1SI8A 5BV2P 4CABA 1E93A 2A9EA 4AUEA 1H6NA
chains in the Genus database with same CATH superfamily
4ENPA 3DY5A 1TH3A 3P9RA 4AUNA 1DGHB 3TTUA 1CF9A 1GWEA 2ISAA 1U5UA 4E37A 4BFLA 3E4YA 5GKNA 4QONA 1GGFA 3TTXA 1TH2A 1SY7A 2XF2A 1DGGA 4B2YA 1P7YA 2J2MA 4QOQA 1TH4A 3PQ7A 3PQ8A 1IPHA 1DGHA 1GGJA 3VU3A 1GWHA 1H7KA 4ENUA 4B7HA 4ENQA 3PQ2A 4QOPA 3RE8A 3PQ5A 1QWLA 2CAGA 3EJ6A 7CATA 4AULA 4ENSA 4ENWA 1HBZA 3TTVA 3PQ3A 1P80A 4B31A 4B7AA 3P9PA 3TTWA 4ENVA 3P9QA 2IQFA 1M7SA 1P7ZA 1DGFA 1P81A 4AJ9A 3PQ4A 3ZJ5A 4B7GA 3E4WA 3PQ6A 4AUMA 1MQFA 4B5KA 1GG9A 1QF7A 1A4EA 1M85A 4ENTA 1QWSA 4QOMA 3TTTA 3J7BA 4BIMA 4ENRA 1NM0A 2IUFA 1GWFA 1QQWA 4QOLA 3P9SA 3NWLA 1F4JA 3HB6A 4B40A 4BLCA 4QOOA 4QORA 1DGBA 8CATA 2CAHA 1GGHA 1QWMA 1GGKA 1TGUA 2XQ1A 1GGEA 3ZJ4A 1SI8A 5BV2P 4CABA 3RGPA 3RGSA 4B7FA 1E93A 2A9EA 4AUEA 1H6NA
chains in the Genus database with same CATH topology
4ENPA 3DY5A 3P9RA 4AUNA 3TTUA 1CF9A 1GWEA 2ISAA 1U5UA 4E37A 4BFLA 4QONA 1GGFA 3TTXA 1SY7A 2XF2A 4B2YA 1P7YA 2J2MA 4QOQA 3PQ7A 3PQ8A 1IPHA 1GGJA 3VU3A 1GWHA 1H7KA 4ENUA 4ENQA 3PQ2A 4QOPA 3PQ5A 1QWLA 2CAGA 3EJ6A 4AULA 4ENSA 4ENWA 1HBZA 3TTVA 3PQ3A 1P80A 4B31A 4B7AA 3P9PA 3TTWA 4ENVA 3P9QA 2IQFA 1M7SA 1P7ZA 4AJ9A 1P81A 3PQ4A 3ZJ5A 3PQ6A 4AUMA 1MQFA 4B5KA 1GG9A 1QF7A 1A4EA 1M85A 4ENTA 1QWSA 4QOMA 3TTTA 4BIMA 4ENRA 1NM0A 2IUFA 1GWFA 4QOLA 3P9SA 1F4JA 3HB6A 4B40A 4QOOA 4QORA 2CAHA 1GGHA 1QWMA 1GGKA 2XQ1A 1GGEA 3ZJ4A 1SI8A 5BV2P 4CABA 1E93A 2A9EA 4AUEA 1H6NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ENP A;  3DY5 A;  3P9R A;  4AUN A;  3TTU A;  1CF9 A;  1GWE A;  2ISA A;  1U5U A;  4E37 A;  4BFL A;  4QON A;  1GGF A;  3TTX A;  1SY7 A;  2XF2 A;  4B2Y A;  1P7Y A;  2J2M A;  4QOQ A;  3PQ7 A;  3PQ8 A;  1IPH A;  1GGJ A;  3VU3 A;  1GWH A;  1H7K A;  4ENU A;  4ENQ A;  3PQ2 A;  4QOP A;  3PQ5 A;  1QWL A;  2CAG A;  3EJ6 A;  4AUL A;  4ENS A;  4ENW A;  1HBZ A;  3TTV A;  3PQ3 A;  1P80 A;  4B31 A;  4B7A A;  3P9P A;  3TTW A;  4ENV A;  3P9Q A;  2IQF A;  1M7S A;  1P7Z A;  4AJ9 A;  1P81 A;  3PQ4 A;  3ZJ5 A;  3PQ6 A;  4AUM A;  1MQF A;  4B5K A;  1GG9 A;  1QF7 A;  1A4E A;  1M85 A;  4ENT A;  1QWS A;  4QOM A;  3TTT A;  4BIM A;  4ENR A;  1NM0 A;  2IUF A;  1GWF A;  4QOL A;  3P9S A;  1F4J A;  3HB6 A;  4B40 A;  4QOO A;  4QOR A;  2CAH A;  1GGH A;  1QWM A;  1GGK A;  2XQ1 A;  1GGE A;  3ZJ4 A;  1SI8 A;  5BV2 P;  4CAB A;  1E93 A;  2A9E A;  4AUE A;  1H6N A; 
#chains in the Genus database with same CATH topology
 4ENP A;  3DY5 A;  1TH3 A;  3P9R A;  4AUN A;  1DGH B;  3TTU A;  1CF9 A;  1GWE A;  2ISA A;  1U5U A;  4E37 A;  4BFL A;  3E4Y A;  5GKN A;  4QON A;  1GGF A;  3TTX A;  1TH2 A;  1SY7 A;  2XF2 A;  1DGG A;  4B2Y A;  1P7Y A;  2J2M A;  4QOQ A;  1TH4 A;  3PQ7 A;  3PQ8 A;  1IPH A;  1DGH A;  1GGJ A;  3VU3 A;  1GWH A;  1H7K A;  4ENU A;  4B7H A;  4ENQ A;  3PQ2 A;  4QOP A;  3RE8 A;  3PQ5 A;  1QWL A;  2CAG A;  3EJ6 A;  7CAT A;  4AUL A;  4ENS A;  4ENW A;  1HBZ A;  3TTV A;  3PQ3 A;  1P80 A;  4B31 A;  4B7A A;  3P9P A;  3TTW A;  4ENV A;  3P9Q A;  2IQF A;  1M7S A;  1P7Z A;  1DGF A;  1P81 A;  4AJ9 A;  3PQ4 A;  3ZJ5 A;  4B7G A;  3E4W A;  3PQ6 A;  4AUM A;  1MQF A;  4B5K A;  1GG9 A;  1QF7 A;  1A4E A;  1M85 A;  4ENT A;  1QWS A;  4QOM A;  3TTT A;  3J7B A;  4BIM A;  4ENR A;  1NM0 A;  2IUF A;  1GWF A;  1QQW A;  4QOL A;  3P9S A;  3NWL A;  1F4J A;  3HB6 A;  4B40 A;  4BLC A;  4QOO A;  4QOR A;  1DGB A;  8CAT A;  2CAH A;  1GGH A;  1QWM A;  1GGK A;  1TGU A;  2XQ1 A;  1GGE A;  3ZJ4 A;  1SI8 A;  5BV2 P;  4CAB A;  3RGP A;  3RGS A;  4B7F A;  1E93 A;  2A9E A;  4AUE A;  1H6N A; 
#chains in the Genus database with same CATH homology
 4ENP A;  3DY5 A;  3P9R A;  4AUN A;  3TTU A;  1CF9 A;  1GWE A;  2ISA A;  1U5U A;  4E37 A;  4BFL A;  4QON A;  1GGF A;  3TTX A;  1SY7 A;  2XF2 A;  4B2Y A;  1P7Y A;  2J2M A;  4QOQ A;  3PQ7 A;  3PQ8 A;  1IPH A;  1GGJ A;  3VU3 A;  1GWH A;  1H7K A;  4ENU A;  4ENQ A;  3PQ2 A;  4QOP A;  3PQ5 A;  1QWL A;  2CAG A;  3EJ6 A;  4AUL A;  4ENS A;  4ENW A;  1HBZ A;  3TTV A;  3PQ3 A;  1P80 A;  4B31 A;  4B7A A;  3P9P A;  3TTW A;  4ENV A;  3P9Q A;  2IQF A;  1M7S A;  1P7Z A;  4AJ9 A;  1P81 A;  3PQ4 A;  3ZJ5 A;  3PQ6 A;  4AUM A;  1MQF A;  4B5K A;  1GG9 A;  1QF7 A;  1A4E A;  1M85 A;  4ENT A;  1QWS A;  4QOM A;  3TTT A;  4BIM A;  4ENR A;  1NM0 A;  2IUF A;  1GWF A;  4QOL A;  3P9S A;  1F4J A;  3HB6 A;  4B40 A;  4QOO A;  4QOR A;  2CAH A;  1GGH A;  1QWM A;  1GGK A;  2XQ1 A;  1GGE A;  3ZJ4 A;  1SI8 A;  5BV2 P;  4CAB A;  1E93 A;  2A9E A;  4AUE A;  1H6N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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