The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
162
|
structure length |
162
|
Chain Sequence |
ETDLLMKMVRQPVKLYSVATLFHEFSEVITKLEHSVQKEPTSLLSEENWHKQFLKFAQALPAHGSASWLNLDDALQAVVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPLDLSNLPAPFYVLLPESFAARITLLVQDKALPYVRVSMEYWHALEYKGELN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
HYPOTHETICAL PROTEIN HI1480
|
| publication title |
Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues
pubmed doi rcsb |
| source organism |
Haemophilus influenzae
|
| total genus |
52
|
| structure length |
162
|
| sequence length |
162
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2002-09-27 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Zinc Finger, Delta Prime; domain 3 | Zinc Finger, Delta Prime; domain 3 |
#chains in the Genus database with same CATH superfamily 1MW5 A; #chains in the Genus database with same CATH topology 1A5T A; 1JR3 D; 4CHD A; 1JR3 E; 3GLF E; 2R9G A; 3GLI E; 3GLH B; 1SXJ D; 2QW6 A; 1SXJ E; 1XXH E; 3PVS A; 3GLG A; 3BGE A; 3RC8 A; 1JQJ C; 3U61 B; 3U60 A; 3GLG E; 3CTD A; 2CHQ A; 3GLF B; 3U5Z B; 3GLH A; 3GLI B; 1IQP A; 3ES5 A; 1SXJ B; 1XXH B; 3U61 A; 2CHV A; 3GLH E; 3ZH9 B; 1JR3 A; 1SXJ C; 3U5Z A; 3GLG B; 3GLF A; 1XXH A; 2GNO A; 3GLI A; 1SXJ A; 3RC3 A; 1MW5 A; 3U60 B; #chains in the Genus database with same CATH homology 1A5T A; 1JR3 D; 4CHD A; 1JR3 E; 3GLF E; 2R9G A; 3GLI E; 3GLH B; 1SXJ D; 2QW6 A; 1SXJ E; 1XXH E; 3PVS A; 3GLG A; 3BGE A; 3RC8 A; 1JQJ C; 3U61 B; 3U60 A; 3GLG E; 3CTD A; 2CHQ A; 3GLF B; 3U5Z B; 3GLH A; 3GLI B; 1IQP A; 3ES5 A; 1SXJ B; 1XXH B; 3U61 A; 2CHV A; 3GLH E; 3ZH9 B; 1JR3 A; 1SXJ C; 3U5Z A; 3GLG B; 3GLF A; 1XXH A; 2GNO A; 3GLI A; 1SXJ A; 3RC3 A; 1MW5 A; 3U60 B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
