1MZ8A

Crystal structures of the nuclease domain of cole7/im7 in complex with a phosphate ion and a zinc ion
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
87
structure length
87
Chain Sequence
MELKNSISDYTEAEFVQLLKEIEKENVAATDDVLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFKQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin,hydrolase/protein binding
molecule keywords Colicin E7 immunity protein
publication title Metal ions and phosphate binding in the H-N-H motif: crystal structures of the nuclease domain of ColE7/Im7 in complex with a phosphate ion and different divalent metal ions
pubmed doi rcsb
source organism Escherichia coli
total genus 30
structure length 87
sequence length 87
chains with identical sequence C
ec nomenclature
pdb deposition date 2002-10-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 1mz8A00
2JB0A 2K5XA 3GKLC 1CEIA 5EW5E 2NO8A 2GZFA 7CEIA 1EMVA 2GZEA 1BXIA 1FR2A 2VLPA 1UJZA 1AYIA 1E0HA 1ZNVA 2GYKA 1MZ8A 3GJNA 2K0DX 4QKOA 4F37A 1IMPA 1GXHA 2VLNA 4UHPB 2WPTA 2GZIA 2VLQA 2GZJA 1IMQA 2ERHA 1GXGA 2JBGA 1UNKA 2JAZA 3U43A 2VLOA 2GZGA
chains in the Genus database with same CATH superfamily
2MD9A 1JJ2O 1EOQA 2GZFA 2KOSA 2K94A 1KQSO 2L6EA 2Z44A 4R0MA 4GR6A 2EG5A 1AUMA 2AFEA 1YITP 3G0VA 3I55P 5F2KA 1VQPP 1QVGO 1A43A 2L9FA 1Z6MA 4U0BA 1L0IA 3RG2A 5EW5E 1CEIA 4PH1A 3DPHA 2KGAA 2VSQA 2OTJP 1ACPA 4QKOA 3M1MA 2KOQA 3CCJP 3G1GA 3DS0A 4U0CA 3MGEA 2KORA 2JO0A 3G71P 1NJIQ 1L0HA 2MVVA 3EJEA 1EIAA 2DNWA 2ROQA 3CCRP 2K0DX 1QVFO 2BUOA 5I4TG 1VQNP 3CXCO 4BPFA 1K9MQ 2XZ0D 3DS3A 4DG9A 4HKGA 4U0DA 4XROA 5KP8B 4IZ6A 2PNGA 1VQ4P 3HYBA 3CC7P 1S72P 2N5HA 4BPGA 2JU1A 2EIAA 4U0AA 5HGMA 2L22A 5HGOA 3GZMA 2K0XA 3CCUP 2KWLA 2PEOA 2MVUA 2MR7A 2KOPA 2L0QA 1RO0A 3DS1A 1HQBA 3NTEA 2ONTA 1DV5A 3G28A 3LRYA 1RNIA 2N6ZA 2LMLA 5DCKA 2VLQA 2ERHA 1DNYA 1GXGA 1UNKA 3H0DA 1N8RQ 3VRLC 7CEIA 5EJDA 1W2BO 5KP6B 1VQ5P 1VQ7P 1VQ6P 4QNBA 3DS4A 2X2BA 2JYGA 1KD1Q 2AF8A 1ZMBA 2DGYA 2JB0A 1M6EX 2AVAA 1K8AQ 3GZLA 3H4EA 2FVAA 3HZQA 2GDWA 2KG6A 2LL8A 2PENA 4MRTC 2L4BA 2LPKA 1IMPA 3CD6P 3H47A 1YJWP 4PH0A 2K92A 2BHVA 3I56P 2CQ8A 3G1IA 4COCA 2GZEA 3WBHA 2AFDA 2LIWA 2PEKA 3OW2O 3CCLP 2KODA 1OR5A 4XFYA 2FADA 4GR2A 2GDXA 2JBGA 2PY8A 1YHQP 2VLOA 2K5XA 3GKLC 1Q7YQ 2MR8A 1NQ4A 2JGPA 3CCEP 2LF4A 2FACA 1VQLP 2N50A 4NEOA 2CNRA 2QA4P 3P05A 2GZJA 1VQOP 1M1KQ 5KP7B 2XZ1C 4PXHB 2EFJA 2EHSA 4U0FA 3DS2A 2PEJA 2JU2A 3GJNA 2K0YA 2K2QA 1KLPA 1GXHA 2FHSC 2MF4A 2VLNA 1GPJA 3CMAP 1T8KA 5BS2A 2M5RA 1YIJP 2PEIA 2GZGA 2KG8A 2CWOA 5F2OA 4BPHA 1K73Q 2LKIA 4XFXA 3Q20A 1AYIA 3LMOA 3CCQP 1MZ8A 2KG9A 2JQ4A 2M8LA 4F37A 4UHPB 2PEQA 2M8PA 2FQ0A 1IMQA 3B4QA 4COPA 2N5IA 1VQ8P 1QRJA 2KR5A 1FR2A 4IPYA 1RO2A 2Z46A 1M90Q 1ZNVA 2GYKA 3CE7A 3G6EP 2CGQA 1Q81Q 2GDYA 2WPTA 2FVFA 1Q82Q 1F80D 2FQ1A 5F2NA 1E6JP 4CA3A 1YJ9P 1YJNP 4XRQA 3RG6C 4M0IA 3CCMP 2LTEA 3DS5A 1X3OA 4H2WC 4H2XC 2LOLA 2XV6A 1BAJA 3NY7B 3G4SP 5HVCA 2LIUA 5CZDB 2FAEA 1M74A 1A8OA 3B5IA 2XXMA 2JAZA 3U43A 3CCSP 3G21A 1VQKP 1AF8A 2JYLA 2NO8A 2CG5B 2QEXP 1BXIA 2VLPA 1D1DA 1VKUA 1YI2P 1VHNA 5HGLA 1VQ9P 3EJDA 4U0EA 2GZIA 2N98A 3CC4P 2M8NA 4XFZA 4PWVB 2EHTA 3CC2P 3EJBA 2PEMA 2KGEA 2FQ2A 1UJZA 1E0HA 2N6YA 2KGDA 1K30A 1VQMP 5BS1A 3CPWO 1HY8A 2MY5A 2K93A 3E2DA 2XT1A 5JPAA 2KGCA 2OTLP 1M6NA 2KW2A 3DTJA 1EMVA 3CMEP 2KOOA 1Q86Q 3G29A 4WYMA 5HGNA 2OARA 3G26A 1KC8Q 2QNWA 2FVEA 1IUQA 2Z45A 4H2YC 2P9XA 2E1MA 3CCVP 5HV8A
chains in the Genus database with same CATH topology
2JB0A 2K5XA 3GKLC 1CEIA 5EW5E 2NO8A 2GZFA 7CEIA 1EMVA 2GZEA 1BXIA 1FR2A 2VLPA 1UJZA 1AYIA 1E0HA 1ZNVA 2GYKA 1MZ8A 3GJNA 2K0DX 4QKOA 4F37A 1IMPA 1GXHA 2VLNA 4UHPB 2WPTA 2GZIA 2VLQA 2GZJA 1IMQA 2ERHA 1GXGA 2JBGA 1UNKA 2JAZA 3U43A 2VLOA 2GZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JB0 A;  2K5X A;  3GKL C;  1CEI A;  5EW5 E;  2NO8 A;  2GZF A;  7CEI A;  1EMV A;  2GZE A;  1BXI A;  1FR2 A;  2VLP A;  1UJZ A;  1AYI A;  1E0H A;  1ZNV A;  2GYK A;  1MZ8 A;  3GJN A;  2K0D X;  4QKO A;  4F37 A;  1IMP A;  1GXH A;  2VLN A;  4UHP B;  2WPT A;  2GZI A;  2VLQ A;  2GZJ A;  1IMQ A;  2ERH A;  1GXG A;  2JBG A;  1UNK A;  2JAZ A;  3U43 A;  2VLO A;  2GZG A; 
#chains in the Genus database with same CATH topology
 2MD9 A;  1JJ2 O;  1EOQ A;  2GZF A;  2KOS A;  2K94 A;  1KQS O;  2L6E A;  2Z44 A;  4R0M A;  4GR6 A;  2EG5 A;  1AUM A;  2AFE A;  1YIT P;  3G0V A;  3I55 P;  5F2K A;  1VQP P;  1QVG O;  1A43 A;  2L9F A;  1Z6M A;  4U0B A;  1L0I A;  3RG2 A;  5EW5 E;  1CEI A;  4PH1 A;  3DPH A;  2KGA A;  2VSQ A;  2OTJ P;  1ACP A;  4QKO A;  3M1M A;  2KOQ A;  3CCJ P;  3G1G A;  3DS0 A;  4U0C A;  3MGE A;  2KOR A;  2JO0 A;  3G71 P;  1NJI Q;  1L0H A;  2MVV A;  3EJE A;  1EIA A;  2DNW A;  2ROQ A;  3CCR P;  2K0D X;  1QVF O;  2BUO A;  5I4T G;  1VQN P;  3CXC O;  4BPF A;  1K9M Q;  2XZ0 D;  3DS3 A;  4DG9 A;  4HKG A;  4U0D A;  4XRO A;  5KP8 B;  4IZ6 A;  2PNG A;  1VQ4 P;  3HYB A;  3CC7 P;  1S72 P;  2N5H A;  4BPG A;  2JU1 A;  2EIA A;  4U0A A;  5HGM A;  2L22 A;  5HGO A;  3GZM A;  2K0X A;  3CCU P;  2KWL A;  2PEO A;  2MVU A;  2MR7 A;  2KOP A;  2L0Q A;  1RO0 A;  3DS1 A;  1HQB A;  3NTE A;  2ONT A;  1DV5 A;  3G28 A;  3LRY A;  1RNI A;  2N6Z A;  2LML A;  5DCK A;  2VLQ A;  2ERH A;  1DNY A;  1GXG A;  1UNK A;  3H0D A;  1N8R Q;  3VRL C;  7CEI A;  5EJD A;  1W2B O;  5KP6 B;  1VQ5 P;  1VQ7 P;  1VQ6 P;  4QNB A;  3DS4 A;  2X2B A;  2JYG A;  1KD1 Q;  2AF8 A;  1ZMB A;  2DGY A;  2JB0 A;  1M6E X;  2AVA A;  1K8A Q;  3GZL A;  3H4E A;  2FVA A;  3HZQ A;  2GDW A;  2KG6 A;  2LL8 A;  2PEN A;  4MRT C;  2L4B A;  2LPK A;  1IMP A;  3CD6 P;  3H47 A;  1YJW P;  4PH0 A;  2K92 A;  2BHV A;  3I56 P;  2CQ8 A;  3G1I A;  4COC A;  2GZE A;  3WBH A;  2AFD A;  2LIW A;  2PEK A;  3OW2 O;  3CCL P;  2KOD A;  1OR5 A;  4XFY A;  2FAD A;  4GR2 A;  2GDX A;  2JBG A;  2PY8 A;  1YHQ P;  2VLO A;  2K5X A;  3GKL C;  1Q7Y Q;  2MR8 A;  1NQ4 A;  2JGP A;  3CCE P;  2LF4 A;  2FAC A;  1VQL P;  2N50 A;  4NEO A;  2CNR A;  2QA4 P;  3P05 A;  2GZJ A;  1VQO P;  1M1K Q;  5KP7 B;  2XZ1 C;  4PXH B;  2EFJ A;  2EHS A;  4U0F A;  3DS2 A;  2PEJ A;  2JU2 A;  3GJN A;  2K0Y A;  2K2Q A;  1KLP A;  1GXH A;  2FHS C;  2MF4 A;  2VLN A;  1GPJ A;  3CMA P;  1T8K A;  5BS2 A;  2M5R A;  1YIJ P;  2PEI A;  2GZG A;  2KG8 A;  2CWO A;  5F2O A;  4BPH A;  1K73 Q;  2LKI A;  4XFX A;  3Q20 A;  1AYI A;  3LMO A;  3CCQ P;  1MZ8 A;  2KG9 A;  2JQ4 A;  2M8L A;  4F37 A;  4UHP B;  2PEQ A;  2M8P A;  2FQ0 A;  1IMQ A;  3B4Q A;  4COP A;  2N5I A;  1VQ8 P;  1QRJ A;  2KR5 A;  1FR2 A;  4IPY A;  1RO2 A;  2Z46 A;  1M90 Q;  1ZNV A;  2GYK A;  3CE7 A;  3G6E P;  2CGQ A;  1Q81 Q;  2GDY A;  2WPT A;  2FVF A;  1Q82 Q;  1F80 D;  2FQ1 A;  5F2N A;  1E6J P;  4CA3 A;  1YJ9 P;  1YJN P;  4XRQ A;  3RG6 C;  4M0I A;  3CCM P;  2LTE A;  3DS5 A;  1X3O A;  4H2W C;  4H2X C;  2LOL A;  2XV6 A;  1BAJ A;  3NY7 B;  3G4S P;  5HVC A;  2LIU A;  5CZD B;  2FAE A;  1M74 A;  1A8O A;  3B5I A;  2XXM A;  2JAZ A;  3U43 A;  3CCS P;  3G21 A;  1VQK P;  1AF8 A;  2JYL A;  2NO8 A;  2CG5 B;  2QEX P;  1BXI A;  2VLP A;  1D1D A;  1VKU A;  1YI2 P;  1VHN A;  5HGL A;  1VQ9 P;  3EJD A;  4U0E A;  2GZI A;  2N98 A;  3CC4 P;  2M8N A;  4XFZ A;  4PWV B;  2EHT A;  3CC2 P;  3EJB A;  2PEM A;  2KGE A;  2FQ2 A;  1UJZ A;  1E0H A;  2N6Y A;  2KGD A;  1K30 A;  1VQM P;  5BS1 A;  3CPW O;  1HY8 A;  2MY5 A;  2K93 A;  3E2D A;  2XT1 A;  5JPA A;  2KGC A;  2OTL P;  1M6N A;  2KW2 A;  3DTJ A;  1EMV A;  3CME P;  2KOO A;  1Q86 Q;  3G29 A;  4WYM A;  5HGN A;  2OAR A;  3G26 A;  1KC8 Q;  2QNW A;  2FVE A;  1IUQ A;  2Z45 A;  4H2Y C;  2P9X A;  2E1M A;  3CCV P;  5HV8 A; 
#chains in the Genus database with same CATH homology
 2JB0 A;  2K5X A;  3GKL C;  1CEI A;  5EW5 E;  2NO8 A;  2GZF A;  7CEI A;  1EMV A;  2GZE A;  1BXI A;  1FR2 A;  2VLP A;  1UJZ A;  1AYI A;  1E0H A;  1ZNV A;  2GYK A;  1MZ8 A;  3GJN A;  2K0D X;  4QKO A;  4F37 A;  1IMP A;  1GXH A;  2VLN A;  4UHP B;  2WPT A;  2GZI A;  2VLQ A;  2GZJ A;  1IMQ A;  2ERH A;  1GXG A;  2JBG A;  1UNK A;  2JAZ A;  3U43 A;  2VLO A;  2GZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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