1N13A

The crystal structure of pyruvoyl-dependent arginine decarboxylase from methanococcus jannashii
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
46
structure length
46
Chain Sequence
PLHAYFKLPNTVSLVAGSSEGETPLNAFDGALLNAGIGNVNLIRIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Pyruvoyl-dependent arginine decarboxylase beta chain
publication title Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 6
structure length 46
sequence length 46
chains with identical sequence C, E, G, I, K
ec nomenclature ec 4.1.1.19: Arginine decarboxylase.
pdb deposition date 2002-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1n13A00
2WCYA 1PJUA 1BMOA 2P6AC 1CSOI 1CT0I 1CT2I 1SGRI 2KMRA 1CE3A 2JYYA 1YU6C 2NU3I 3SGBI 1NUBA 1TURA 1DS3I 3HH2C 1TIHA 2KMOA 2SGFI 2ERWA 1PPFI 2OVOA 1OYVI 1OMUA 5DAEA 3SEKC 3QTLD 2KMQA 4GI3C 1TGSI 1IY6A 1N13A 1FYBA 1M8BA 1M8CA 1PCEA 1LR7A 2NU4I 2NU0I 1Y1BA 1IW4A 1HJAI 2JXDA 2GKVA 2NU1I 1AN1I 2QQCA 1R0RI 1SGDI 2XRCA 1KMAA 1UVGA 2KCXA 2N52A 1CGJI 2QQDA 2N17A 1CHOI 2JZMA 3TJQA 2B0UC 1BUSA 2KMPA 2ARPF 4OVOA 2NU2I 1UVFA 2GKRI 1HDLA 2GKTI 2BUSA 1SGNI 1TBRR 1SGPI 1MT1A 2M5XA 1UUCA 5JHWC 2SGQI 2F3CI 2LEOA 1CGII 1IY5A 1SGQI 2N71A 1OMTA 2V53A 4SGBI 1DS2I 1SGYI 1SGEI 1Z7KB 4HGUA 1LR8A 3SGQI 1H0ZA 1LR9A 3B4VC 1HPTA 2SGEI 1TUSA 1Y1CA 1OVOA 2SGDI 1TBQR 1YTPA 3OVOA 2SGPI 1CT4I
chains in the Genus database with same CATH superfamily
2E73A 2WCYA 1PJUA 2YQPA 3OL0A 1BMOA 3UGDA 2P6AC 3UEYA 1FARA 2JW6A 1CSOI 1CT0I 1WGTA 1CT2I 1SGRI 2KMRA 1CE3A 5E3PA 1WGCA 1MJBA 3BJIA 2JYYA 3UGLA 1U5KA 1YU6C 2NU3I 3SGBI 1PTRA 3TOAA 4E1PA 1R79A 1NUBA 1TURA 3FSXA 1DS3I 2B8TA 1TIHA 3CXLA 3HH2C 2CWHA 2KMOA 2SGFI 3R5DA 2ERWA 1PPFI 5CCLA 1MJ9A 4A24A 2OVOA 1OYVI 2K9HA 1OMUA 5DAEA 2LB7A 2V1CC 4B6DA 1P9GA 3SEKC 2OZUA 3QTLD 2QPOA 2KMQA 1FAQA 4GI3C 1TOTA 3TOBA 1XX6A 1TGSI 2N1AB 1ULMA 1P9ZA 7WGAA 2JA1A 1IY6A 1N13A 2DIPA 4UXHA 2CWFA 2V1CA 1FYBA 1M8BA 2ENNA 3UFFA 4WP4A 1Q9BA 3OXLA 1M8CA 2RIJA 3VDUA 5FUYA 4E1RA 1PCEA 3PDNA 1LR7A 1K7VA 5HI7A 3TO6A 2NU4I 2E5RA 2NU0I 2GIVA 1V1HA 5FUVA 1W4RA 1Y1BA 1X4SA 1IW4A 1HJAI 2JXDA 2GKVA 1NXUA 3UOEA 1PTQA 2NU1I 1AN1I 2QQCA 3R5AA 1ULKA 2QQEA 1TBOA 1R0RI 1SGDI 2WGCA 2XRCA 5E3RA 3R5CA 2Y0MA 4FKDA 3TO7A 1W3SA 3OXGA 1KMAA 1UVGA 2KCXA 2N52A 2J87A 1CGJI 1KBEA 1TBNA 1RFHA 1UHAA 1FY7A 2QQDA 2N17A 1ULNA 3VE5A 3VDPA 1CHOI 1S20A 3OXFA 2ORVA 2JZMA 4AMLA 3TO9A 3UGIA 2OD1A 2ELIA 2DKVA 2ODDA 1MJAA 1KBFA 4UXIA 2FNFX 4MPIA 4DNCA 5CCMA 2J9RA 1WKXA 2WVJA 3TJQA 2B0UC 1BUSA 2KMPA 3R5BA 1V1IA 2ARPF 4OVOA 1Y8FA 2NU2I 5EX0A 1UVFA 2GKRI 3E59A 1VDDA 1HDLA 2GKTI 2X52A 2ENZA 2BUSA 2DB6A 1SGNI 1XA6A 2CJSC 2RC4A 3KY9A 5HQ8A 1TBRR 1SGPI 1MT1A 2L7XA 1XBTA 5FUXA 1K7TA 3D00A 5J8FA 1Z2IA 3QAHA 2M5XA 4JCVE 4L9MA 3FC3A 1UUCA 5EX3A 2UVOA 5JHWC 2SGQI 1X74A 2F3CI 2LEOA 3MEKA 3FSYA 1CGII 1IY5A 2CWGA 1SGQI 2N71A 1OMTA 2V53A 4SGBI 2YUUA 2UZ3A 2A20A 2LUYA 2L8EA 2ROWA 2VRWB 1DS2I 1SGYI 1WTJA 3RU0A 1SGEI 1Z7KB 4HGUA 2OU2A 5E3QA 2GVIA 3E2IA 5FUWA 1HEVA 1LR8A 3SGQI 3UEJA 1H0ZA 1K7UA 1LR9A 2X3TA 3B4VC 1HPTA 2SGEI 2ORWA 5J8CA 4UXJA 1TUSA 2W0TA 9WGAA 1Y1CA 3QWPA 1OVOA 2PQ8A 1TBQR 2QQ0A 1YTPA 2SGDI 3OVOA 3GOXA 2SGPI 1CT4I
chains in the Genus database with same CATH topology
2E73A 2WCYA 1PJUA 2YQPA 3OL0A 1BMOA 3UGDA 2P6AC 3UEYA 1FARA 2JW6A 1CSOI 1CT0I 1CT2I 1SGRI 2KMRA 1CE3A 3UGLA 3BJIA 2JYYA 1U5KA 1YU6C 2NU3I 3SGBI 1PTRA 4E1PA 1R79A 1NUBA 1TURA 1DS3I 2B8TA 1TIHA 3CXLA 3HH2C 2KMOA 2SGFI 2ERWA 1PPFI 5CCLA 4A24A 2OVOA 1OYVI 2K9HA 1OMUA 5DAEA 2V1CC 4B6DA 3SEKC 3QTLD 2QPOA 2KMQA 1FAQA 4GI3C 1TOTA 1XX6A 1TGSI 2N1AB 2JA1A 1IY6A 1N13A 2DIPA 4UXHA 2V1CA 1FYBA 1M8BA 2ENNA 3UFFA 3OXLA 1M8CA 3VDUA 5FUYA 4E1RA 1PCEA 3PDNA 1LR7A 5HI7A 2NU4I 2E5RA 2NU0I 1V1HA 5FUVA 1W4RA 1Y1BA 1X4SA 1IW4A 1HJAI 2JXDA 2GKVA 1PTQA 2NU1I 1AN1I 2QQCA 2QQEA 1TBOA 1R0RI 1SGDI 2XRCA 4FKDA 1W3SA 3OXGA 1KMAA 1UVGA 2KCXA 2N52A 2J87A 1CGJI 1KBEA 1TBNA 1RFHA 2QQDA 2N17A 3VE5A 3VDPA 1CHOI 3OXFA 2ORVA 2JZMA 3UGIA 2OD1A 2ELIA 2ODDA 1KBFA 4UXIA 2FNFX 5CCMA 2J9RA 2WVJA 3TJQA 2B0UC 1BUSA 2KMPA 1V1IA 2ARPF 4OVOA 1Y8FA 2NU2I 5EX0A 1UVFA 2GKRI 3E59A 1VDDA 1HDLA 2GKTI 2ENZA 2BUSA 2DB6A 1SGNI 1XA6A 2CJSC 3KY9A 5HQ8A 1TBRR 1SGPI 1MT1A 2L7XA 1XBTA 5FUXA 3D00A 4JCVE 2M5XA 4L9MA 3FC3A 1UUCA 5EX3A 5JHWC 2SGQI 1X74A 2F3CI 2LEOA 3MEKA 1CGII 1IY5A 1SGQI 2N71A 1OMTA 2V53A 4SGBI 2YUUA 2UZ3A 2A20A 2LUYA 2L8EA 2ROWA 2VRWB 1DS2I 1SGYI 3RU0A 1SGEI 1Z7KB 4HGUA 2GVIA 3E2IA 5FUWA 1LR8A 3SGQI 3UEJA 1H0ZA 1LR9A 3B4VC 1HPTA 2SGEI 2ORWA 4UXJA 1TUSA 2W0TA 1Y1CA 3QWPA 1OVOA 2SGDI 1TBQR 2QQ0A 1YTPA 3OVOA 3GOXA 2SGPI 1CT4I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WCY A;  1PJU A;  1BMO A;  2P6A C;  1CSO I;  1CT0 I;  1CT2 I;  1SGR I;  2KMR A;  1CE3 A;  2JYY A;  1YU6 C;  2NU3 I;  3SGB I;  1NUB A;  1TUR A;  1DS3 I;  3HH2 C;  1TIH A;  2KMO A;  2SGF I;  2ERW A;  1PPF I;  2OVO A;  1OYV I;  1OMU A;  5DAE A;  3SEK C;  3QTL D;  2KMQ A;  4GI3 C;  1TGS I;  1IY6 A;  1N13 A;  1FYB A;  1M8B A;  1M8C A;  1PCE A;  1LR7 A;  2NU4 I;  2NU0 I;  1Y1B A;  1IW4 A;  1HJA I;  2JXD A;  2GKV A;  2NU1 I;  1AN1 I;  2QQC A;  1R0R I;  1SGD I;  2XRC A;  1KMA A;  1UVG A;  2KCX A;  2N52 A;  1CGJ I;  2QQD A;  2N17 A;  1CHO I;  2JZM A;  3TJQ A;  2B0U C;  1BUS A;  2KMP A;  2ARP F;  4OVO A;  2NU2 I;  1UVF A;  2GKR I;  1HDL A;  2GKT I;  2BUS A;  1SGN I;  1TBR R;  1SGP I;  1MT1 A;  2M5X A;  1UUC A;  5JHW C;  2SGQ I;  2F3C I;  2LEO A;  1CGI I;  1IY5 A;  1SGQ I;  2N71 A;  1OMT A;  2V53 A;  4SGB I;  1DS2 I;  1SGY I;  1SGE I;  1Z7K B;  4HGU A;  1LR8 A;  3SGQ I;  1H0Z A;  1LR9 A;  3B4V C;  1HPT A;  2SGE I;  1TUS A;  1Y1C A;  1OVO A;  2SGD I;  1TBQ R;  1YTP A;  3OVO A;  2SGP I;  1CT4 I; 
#chains in the Genus database with same CATH topology
 2E73 A;  2WCY A;  1PJU A;  2YQP A;  3OL0 A;  1BMO A;  3UGD A;  2P6A C;  3UEY A;  1FAR A;  2JW6 A;  1CSO I;  1CT0 I;  1WGT A;  1CT2 I;  1SGR I;  2KMR A;  1CE3 A;  5E3P A;  1WGC A;  1MJB A;  3BJI A;  2JYY A;  3UGL A;  1U5K A;  1YU6 C;  2NU3 I;  3SGB I;  1PTR A;  3TOA A;  4E1P A;  1R79 A;  1NUB A;  1TUR A;  3FSX A;  1DS3 I;  2B8T A;  1TIH A;  3CXL A;  3HH2 C;  2CWH A;  2KMO A;  2SGF I;  3R5D A;  2ERW A;  1PPF I;  5CCL A;  1MJ9 A;  4A24 A;  2OVO A;  1OYV I;  2K9H A;  1OMU A;  5DAE A;  2LB7 A;  2V1C C;  4B6D A;  1P9G A;  3SEK C;  2OZU A;  3QTL D;  2QPO A;  2KMQ A;  1FAQ A;  4GI3 C;  1TOT A;  3TOB A;  1XX6 A;  1TGS I;  2N1A B;  1ULM A;  1P9Z A;  7WGA A;  2JA1 A;  1IY6 A;  1N13 A;  2DIP A;  4UXH A;  2CWF A;  2V1C A;  1FYB A;  1M8B A;  2ENN A;  3UFF A;  4WP4 A;  1Q9B A;  3OXL A;  1M8C A;  2RIJ A;  3VDU A;  5FUY A;  4E1R A;  1PCE A;  3PDN A;  1LR7 A;  1K7V A;  5HI7 A;  3TO6 A;  2NU4 I;  2E5R A;  2NU0 I;  2GIV A;  1V1H A;  5FUV A;  1W4R A;  1Y1B A;  1X4S A;  1IW4 A;  1HJA I;  2JXD A;  2GKV A;  1NXU A;  3UOE A;  1PTQ A;  2NU1 I;  1AN1 I;  2QQC A;  3R5A A;  1ULK A;  2QQE A;  1TBO A;  1R0R I;  1SGD I;  2WGC A;  2XRC A;  5E3R A;  3R5C A;  2Y0M A;  4FKD A;  3TO7 A;  1W3S A;  3OXG A;  1KMA A;  1UVG A;  2KCX A;  2N52 A;  2J87 A;  1CGJ I;  1KBE A;  1TBN A;  1RFH A;  1UHA A;  1FY7 A;  2QQD A;  2N17 A;  1ULN A;  3VE5 A;  3VDP A;  1CHO I;  1S20 A;  3OXF A;  2ORV A;  2JZM A;  4AML A;  3TO9 A;  3UGI A;  2OD1 A;  2ELI A;  2DKV A;  2ODD A;  1MJA A;  1KBF A;  4UXI A;  2FNF X;  4MPI A;  4DNC A;  5CCM A;  2J9R A;  1WKX A;  2WVJ A;  3TJQ A;  2B0U C;  1BUS A;  2KMP A;  3R5B A;  1V1I A;  2ARP F;  4OVO A;  1Y8F A;  2NU2 I;  5EX0 A;  1UVF A;  2GKR I;  3E59 A;  1VDD A;  1HDL A;  2GKT I;  2X52 A;  2ENZ A;  2BUS A;  2DB6 A;  1SGN I;  1XA6 A;  2CJS C;  2RC4 A;  3KY9 A;  5HQ8 A;  1TBR R;  1SGP I;  1MT1 A;  2L7X A;  1XBT A;  5FUX A;  1K7T A;  3D00 A;  5J8F A;  1Z2I A;  3QAH A;  2M5X A;  4JCV E;  4L9M A;  3FC3 A;  1UUC A;  5EX3 A;  2UVO A;  5JHW C;  2SGQ I;  1X74 A;  2F3C I;  2LEO A;  3MEK A;  3FSY A;  1CGI I;  1IY5 A;  2CWG A;  1SGQ I;  2N71 A;  1OMT A;  2V53 A;  4SGB I;  2YUU A;  2UZ3 A;  2A20 A;  2LUY A;  2L8E A;  2ROW A;  2VRW B;  1DS2 I;  1SGY I;  1WTJ A;  3RU0 A;  1SGE I;  1Z7K B;  4HGU A;  2OU2 A;  5E3Q A;  2GVI A;  3E2I A;  5FUW A;  1HEV A;  1LR8 A;  3SGQ I;  3UEJ A;  1H0Z A;  1K7U A;  1LR9 A;  2X3T A;  3B4V C;  1HPT A;  2SGE I;  2ORW A;  5J8C A;  4UXJ A;  1TUS A;  2W0T A;  9WGA A;  1Y1C A;  3QWP A;  1OVO A;  2PQ8 A;  1TBQ R;  2QQ0 A;  1YTP A;  2SGD I;  3OVO A;  3GOX A;  2SGP I;  1CT4 I; 
#chains in the Genus database with same CATH homology
 2E73 A;  2WCY A;  1PJU A;  2YQP A;  3OL0 A;  1BMO A;  3UGD A;  2P6A C;  3UEY A;  1FAR A;  2JW6 A;  1CSO I;  1CT0 I;  1CT2 I;  1SGR I;  2KMR A;  1CE3 A;  3UGL A;  3BJI A;  2JYY A;  1U5K A;  1YU6 C;  2NU3 I;  3SGB I;  1PTR A;  4E1P A;  1R79 A;  1NUB A;  1TUR A;  1DS3 I;  2B8T A;  1TIH A;  3CXL A;  3HH2 C;  2KMO A;  2SGF I;  2ERW A;  1PPF I;  5CCL A;  4A24 A;  2OVO A;  1OYV I;  2K9H A;  1OMU A;  5DAE A;  2V1C C;  4B6D A;  3SEK C;  3QTL D;  2QPO A;  2KMQ A;  1FAQ A;  4GI3 C;  1TOT A;  1XX6 A;  1TGS I;  2N1A B;  2JA1 A;  1IY6 A;  1N13 A;  2DIP A;  4UXH A;  2V1C A;  1FYB A;  1M8B A;  2ENN A;  3UFF A;  3OXL A;  1M8C A;  3VDU A;  5FUY A;  4E1R A;  1PCE A;  3PDN A;  1LR7 A;  5HI7 A;  2NU4 I;  2E5R A;  2NU0 I;  1V1H A;  5FUV A;  1W4R A;  1Y1B A;  1X4S A;  1IW4 A;  1HJA I;  2JXD A;  2GKV A;  1PTQ A;  2NU1 I;  1AN1 I;  2QQC A;  2QQE A;  1TBO A;  1R0R I;  1SGD I;  2XRC A;  4FKD A;  1W3S A;  3OXG A;  1KMA A;  1UVG A;  2KCX A;  2N52 A;  2J87 A;  1CGJ I;  1KBE A;  1TBN A;  1RFH A;  2QQD A;  2N17 A;  3VE5 A;  3VDP A;  1CHO I;  3OXF A;  2ORV A;  2JZM A;  3UGI A;  2OD1 A;  2ELI A;  2ODD A;  1KBF A;  4UXI A;  2FNF X;  5CCM A;  2J9R A;  2WVJ A;  3TJQ A;  2B0U C;  1BUS A;  2KMP A;  1V1I A;  2ARP F;  4OVO A;  1Y8F A;  2NU2 I;  5EX0 A;  1UVF A;  2GKR I;  3E59 A;  1VDD A;  1HDL A;  2GKT I;  2ENZ A;  2BUS A;  2DB6 A;  1SGN I;  1XA6 A;  2CJS C;  3KY9 A;  5HQ8 A;  1TBR R;  1SGP I;  1MT1 A;  2L7X A;  1XBT A;  5FUX A;  3D00 A;  4JCV E;  2M5X A;  4L9M A;  3FC3 A;  1UUC A;  5EX3 A;  5JHW C;  2SGQ I;  1X74 A;  2F3C I;  2LEO A;  3MEK A;  1CGI I;  1IY5 A;  1SGQ I;  2N71 A;  1OMT A;  2V53 A;  4SGB I;  2YUU A;  2UZ3 A;  2A20 A;  2LUY A;  2L8E A;  2ROW A;  2VRW B;  1DS2 I;  1SGY I;  3RU0 A;  1SGE I;  1Z7K B;  4HGU A;  2GVI A;  3E2I A;  5FUW A;  1LR8 A;  3SGQ I;  3UEJ A;  1H0Z A;  1LR9 A;  3B4V C;  1HPT A;  2SGE I;  2ORW A;  4UXJ A;  1TUS A;  2W0T A;  1Y1C A;  3QWP A;  1OVO A;  2SGD I;  1TBQ R;  2QQ0 A;  1YTP A;  3OVO A;  3GOX A;  2SGP I;  1CT4 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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