1NDBA

Crystal structure of carnitine acetyltransferase
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
total genus 198
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA02
2FY5A 1NDIA 1Q6XA 1T1UA 2FY2A 2FY4A 1NDFA 2H3WA 2H4TA 4EYWA 2DEBA 2H3PA 1S5OA 2FW3A 1T7NA 2RCUA 2FY3A 1T7OA 1NM8A 1NDBA 2H3UA 1T7QA 2FYOA 4EPHA 4EP9A
chains in the Genus database with same CATH superfamily
2FY5A 1NDIA 2II5A 1EABA 1NOCB 2IHWA 2H4TA 5FANA 4G2MA 5KJWA 1SCZA 2H3PA 2E1UA 3FOTA 5FALA 1XMDA 4KE4A 2FY3A 4HVMA 1NDBA 3MAEA 2H3UA 2RKTA 1XL8A 1T7QA 1EAAA 2FY4A 1NDFA 2H3WA 3L60A 2CLAA 2VSQA 4N72A 2RCUA 1T7OA 1PD5A 1Q23A 2XR7A 5KJSA 1XL7A 2JGPA 2FYOA 4EPHA 2XHGA 1DPCA 3CLAA 1T1UA 1Q9JA 2I9DA 4JN5A 5KJTA 1EAEA 2DEBA 1S5OA 1T7NA 2FW3A 4JN3A 1QCAA 1E2OA 4G22A 4EP9A 1C4TA 5KJUA 1DPBA 3U9FA 2E1TA 3U9BA 4G0BA 1CIAA 1CLAA 1EACA 5T3EA 1Q6XA 2FY2A 3B2SA 4KECA 4EYWA 1XMCA 2ZBAA 5KJVA 2BGHA 3FP0A 1DPDA 1EADA 5DUAA 1EAFA 2E1VA 1NM8A 2II4A 5DU9A 1L5AA 4CLAA 2II3A 2RKVA 3B30A
chains in the Genus database with same CATH topology
2FY5A 1NDIA 5T3EA 1Q6XA 1T1UA 2FY2A 2FY4A 1NDFA 2H3WA 1Q9JA 2H4TA 4JN5A 4EYWA 2DEBA 2H3PA 3FOTA 2VSQA 1S5OA 2FW3A 1T7NA 4JN3A 3FP0A 2RCUA 2FY3A 1T7OA 5DUAA 1NM8A 1NDBA 4HVMA 2H3UA 5DU9A 1L5AA 2JGPA 1T7QA 2FYOA 4EPHA 2XHGA 4EP9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY5 A;  1NDI A;  1Q6X A;  1T1U A;  2FY2 A;  2FY4 A;  1NDF A;  2H3W A;  2H4T A;  4EYW A;  2DEB A;  2H3P A;  1S5O A;  2FW3 A;  1T7N A;  2RCU A;  2FY3 A;  1T7O A;  1NM8 A;  1NDB A;  2H3U A;  1T7Q A;  2FYO A;  4EPH A;  4EP9 A; 
#chains in the Genus database with same CATH topology
 2FY5 A;  1NDI A;  2II5 A;  1EAB A;  1NOC B;  2IHW A;  2H4T A;  5FAN A;  4G2M A;  5KJW A;  1SCZ A;  2H3P A;  2E1U A;  3FOT A;  5FAL A;  1XMD A;  4KE4 A;  2FY3 A;  4HVM A;  1NDB A;  3MAE A;  2H3U A;  2RKT A;  1XL8 A;  1T7Q A;  1EAA A;  2FY4 A;  1NDF A;  2H3W A;  3L60 A;  2CLA A;  2VSQ A;  4N72 A;  2RCU A;  1T7O A;  1PD5 A;  1Q23 A;  2XR7 A;  5KJS A;  1XL7 A;  2JGP A;  2FYO A;  4EPH A;  2XHG A;  1DPC A;  3CLA A;  1T1U A;  1Q9J A;  2I9D A;  4JN5 A;  5KJT A;  1EAE A;  2DEB A;  1S5O A;  1T7N A;  2FW3 A;  4JN3 A;  1QCA A;  1E2O A;  4G22 A;  4EP9 A;  1C4T A;  5KJU A;  1DPB A;  3U9F A;  2E1T A;  3U9B A;  4G0B A;  1CIA A;  1CLA A;  1EAC A;  5T3E A;  1Q6X A;  2FY2 A;  3B2S A;  4KEC A;  4EYW A;  1XMC A;  2ZBA A;  5KJV A;  2BGH A;  3FP0 A;  1DPD A;  1EAD A;  5DUA A;  1EAF A;  2E1V A;  1NM8 A;  2II4 A;  5DU9 A;  1L5A A;  4CLA A;  2II3 A;  2RKV A;  3B30 A; 
#chains in the Genus database with same CATH homology
 2FY5 A;  1NDI A;  5T3E A;  1Q6X A;  1T1U A;  2FY2 A;  2FY4 A;  1NDF A;  2H3W A;  1Q9J A;  2H4T A;  4JN5 A;  4EYW A;  2DEB A;  2H3P A;  3FOT A;  2VSQ A;  1S5O A;  2FW3 A;  1T7N A;  4JN3 A;  3FP0 A;  2RCU A;  2FY3 A;  1T7O A;  5DUA A;  1NM8 A;  1NDB A;  4HVM A;  2H3U A;  5DU9 A;  1L5A A;  2JGP A;  1T7Q A;  2FYO A;  4EPH A;  2XHG A;  4EP9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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