1NHMA

The structure of the hmg box and its interaction with dna
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
79
structure length
79
Chain Sequence
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna-binding
molecule keywords HIGH MOBILITY GROUP PROTEIN 1
publication title The Structure of the Hmg Box and its Interaction with DNA
pubmed rcsb
source organism Cricetulus griseus
total genus 21
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 1994-11-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 1nhmA00
2CTOA 1GT0D 2RTUA 2EQZA 1O4XB 1WGFA 2LE4A 2D7LA 2GZKA 1AABA 2LY4A 1LWMA 1I11A 4Y60C 3F27D 3TMMA 1HRZA 2YUKA 3NM9A 1WXLA 4NODA 1HMEA 1CG7A 1L8YA 1WZ6A 1J3XA 1J5NA 1HRYA 2YQIA 4A3NA 3FGHA 1NHMA 1V64A 4QR9A 2YRQA 1HMFA 4EUWA 1NHNA 4NNUA 1QRVA 1V63A 2YULA 1K99A 1E7JA 1J3DA 1HSMA 2E6OA 2HDZA 4S2QD 1HSNA 1J3CA 1HMAA 1J46A 2LHJA 2CO9A 2CRJA 3U2BC 3TQ6A 1L8ZA 2CS1A 1CKTA 1J47A 2LEFA
chains in the Genus database with same CATH superfamily
2CTOA 5H8WA 1GT0D 2RTUA 2EQZA 1O4XB 1WGFA 2LE4A 2D7LA 2GZKA 1AABA 2LY4A 1LWMA 1I11A 4Y60C 2VSFA 3F27D 3TMMA 1HRZA 2YUKA 3NM9A 1WXLA 4NODA 1HMEA 1CG7A 1L8YA 1WZ6A 1J3XA 1J5NA 1HRYA 2YQIA 4A3NA 4A15A 3FGHA 3ABRB 1NHMA 1V64A 4QR9A 1J47A 2YRQA 1HMFA 4EUWA 1NHNA 4NNUA 1QRVA 1V63A 2YULA 1K99A 3AO0B 1E7JA 1J3DA 3ABOB 3ABSB 1HSMA 2E6OA 2HDZA 3ANYB 4S2QD 1J3CA 1HMAA 1J46A 2LHJA 1HSNA 2CO9A 2CRJA 3U2BC 3TQ6A 1L8ZA 2CS1A 1CKTA 4KQEA 2LEFA
chains in the Genus database with same CATH topology
2CTOA 1GT0D 2RTUA 2EQZA 1O4XB 1WGFA 2LE4A 2D7LA 2GZKA 1AABA 2LY4A 1LWMA 1I11A 4Y60C 3F27D 3TMMA 1HRZA 2YUKA 3NM9A 1WXLA 4NODA 1HMEA 1CG7A 1L8YA 1WZ6A 1J3XA 1J5NA 1HRYA 2YQIA 4A3NA 3FGHA 1NHMA 1V64A 4QR9A 2YRQA 1HMFA 4EUWA 1NHNA 4NNUA 1QRVA 1V63A 2YULA 1K99A 1E7JA 1J3DA 1HSMA 2E6OA 2HDZA 4S2QD 1HSNA 1J3CA 1HMAA 1J46A 2LHJA 2CO9A 2CRJA 3U2BC 3TQ6A 1L8ZA 2CS1A 1CKTA 1J47A 2LEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CTO A;  1GT0 D;  2RTU A;  2EQZ A;  1O4X B;  1WGF A;  2LE4 A;  2D7L A;  2GZK A;  1AAB A;  2LY4 A;  1LWM A;  1I11 A;  4Y60 C;  3F27 D;  3TMM A;  1HRZ A;  2YUK A;  3NM9 A;  1WXL A;  4NOD A;  1HME A;  1CG7 A;  1L8Y A;  1WZ6 A;  1J3X A;  1J5N A;  1HRY A;  2YQI A;  4A3N A;  3FGH A;  1NHM A;  1V64 A;  4QR9 A;  2YRQ A;  1HMF A;  4EUW A;  1NHN A;  4NNU A;  1QRV A;  1V63 A;  2YUL A;  1K99 A;  1E7J A;  1J3D A;  1HSM A;  2E6O A;  2HDZ A;  4S2Q D;  1HSN A;  1J3C A;  1HMA A;  1J46 A;  2LHJ A;  2CO9 A;  2CRJ A;  3U2B C;  3TQ6 A;  1L8Z A;  2CS1 A;  1CKT A;  1J47 A;  2LEF A; 
#chains in the Genus database with same CATH topology
 2CTO A;  5H8W A;  1GT0 D;  2RTU A;  2EQZ A;  1O4X B;  1WGF A;  2LE4 A;  2D7L A;  2GZK A;  1AAB A;  2LY4 A;  1LWM A;  1I11 A;  4Y60 C;  2VSF A;  3F27 D;  3TMM A;  1HRZ A;  2YUK A;  3NM9 A;  1WXL A;  4NOD A;  1HME A;  1CG7 A;  1L8Y A;  1WZ6 A;  1J3X A;  1J5N A;  1HRY A;  2YQI A;  4A3N A;  4A15 A;  3FGH A;  3ABR B;  1NHM A;  1V64 A;  4QR9 A;  1J47 A;  2YRQ A;  1HMF A;  4EUW A;  1NHN A;  4NNU A;  1QRV A;  1V63 A;  2YUL A;  1K99 A;  3AO0 B;  1E7J A;  1J3D A;  3ABO B;  3ABS B;  1HSM A;  2E6O A;  2HDZ A;  3ANY B;  4S2Q D;  1J3C A;  1HMA A;  1J46 A;  2LHJ A;  1HSN A;  2CO9 A;  2CRJ A;  3U2B C;  3TQ6 A;  1L8Z A;  2CS1 A;  1CKT A;  4KQE A;  2LEF A; 
#chains in the Genus database with same CATH homology
 2CTO A;  1GT0 D;  2RTU A;  2EQZ A;  1O4X B;  1WGF A;  2LE4 A;  2D7L A;  2GZK A;  1AAB A;  2LY4 A;  1LWM A;  1I11 A;  4Y60 C;  3F27 D;  3TMM A;  1HRZ A;  2YUK A;  3NM9 A;  1WXL A;  4NOD A;  1HME A;  1CG7 A;  1L8Y A;  1WZ6 A;  1J3X A;  1J5N A;  1HRY A;  2YQI A;  4A3N A;  3FGH A;  1NHM A;  1V64 A;  4QR9 A;  2YRQ A;  1HMF A;  4EUW A;  1NHN A;  4NNU A;  1QRV A;  1V63 A;  2YUL A;  1K99 A;  1E7J A;  1J3D A;  1HSM A;  2E6O A;  2HDZ A;  4S2Q D;  1HSN A;  1J3C A;  1HMA A;  1J46 A;  2LHJ A;  2CO9 A;  2CRJ A;  3U2B C;  3TQ6 A;  1L8Z A;  2CS1 A;  1CKT A;  1J47 A;  2LEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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