1OVAB

Crystal structure of uncleaved ovalbumin at 1.95 angstroms resolution
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
385
structure length
371
Chain Sequence
GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVGAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Serpin
molecule keywords OVALBUMIN
publication title Crystal structure of uncleaved ovalbumin at 1.95 A resolution.
pubmed doi rcsb
source organism Gallus gallus
total genus 103
structure length 371
sequence length 385
ec nomenclature
pdb deposition date 1990-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1ovaB01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1ovaB02
1E03I 4PYWA 4AQHA 1DZHI 1JVQI 4RSQA 1PSIA 3DLWA 2DUTA 3NE4A 2OAYA 2H4PA 3VVJA 4G8RA 1EZXA 4DY0A 4ROAA 1NQ9I 1OC0A 3H5CA 4KDSA 1YXAA 2WY1A 1DVMA 4R9IA 2WXZC 1E04I 3EVJI 4P0OA 1E05I 1SNGA 2HIJL 2PEEA 3KCGI 3NDDA 4AJTA 4P0FA 3FGQA 1DZGL 2QUGA 4ZK0A 1UHGA 1ATUA 1AZXI 2ARQA 3NDFA 3PB1I 3CVMA 4GA7A 2HIJI 2RIVA 3Q03A 9PAIA 3F5NA 1DZHL 4EB1I 1DZGI 2B5TI 1SEKA 1AS4A 1XU8A 1KCTA 3LW2A 4RO9A 4IF8A 1BY7A 4X30A 3PZFA 1LQ8A 1XQJA 3DRUA 2D26A 4AJUA 1QMNA 1A7CA 1M93B 1OO8A 2XN6A 4Y40A 1JMOA 5IO1A 2H4QA 1OVAB 1LK6I 2HI9A 3NDAA 2XN7A 4EB1L 1IZ2A 1OPHA 1D5SA 1JRRA 1DB2A 1OVAC 2VDXA 7APIA 4AU3B 1C5GA 2WXZA 1C8OA 2BEHI 1LJ5A 2H4RA 5CDZA 3CWLA 1JTIA 1K9OI 1ANTI 2B4XI 2WXXA 2XN3A 5BRRI 1WZ9A 5C98A 1B3KA 3STOA 4G8OA 3CAAA 8APIA 4C49A 2WY0C 1ATTA 3F1SA 3CWMA 1IMVA 1DVNA 2RIWA 5CDXA 1QLPA 4ROBA 2WXYC 1OYHI 9APIA 2VH4A 2PEFA 1T1FA 4IC0A 2WXWA 3OZQA 4C41A 3EOXA 2BEHL 4BB2A 3R4LA 4Y3KA 4ZK3A 2R9YA 3DRMA 1JJOC 2B4XL 5INWA 1ATHA 4YIAA 3UT3A 3B9FI 3Q02A 2CEOA 1F0CA 1HP7A 1OVAA 2ACHA 4AFXA 1R1LI 4DY7C 5CE0A 2ARRA 2OL2A 2ZV6A 4AU3A 4AU2A 1JMJA 2ZNHA 2GD4C 1OYHL 4AU4A 5HGCA 3DY0A 1BR8I 1MTPA 3ZHAA 2XN5A 3LE2A 5EI0A 1TB6I 1XQGA 2ANTI 3F02A 4DTEA 4CAAA 1SR5A 3T1PA 1QMBA 2VDYA 2V95A 1HLEA
chains in the Genus database with same CATH superfamily
1E03I 4PYWA 4AQHA 1DZHI 1JVQI 4RSQA 1PSIA 3DLWA 2DUTA 3NE4A 2OAYA 2H4PA 3VVJA 4G8RA 1EZXA 4DY0A 4ROAA 1NQ9I 1OC0A 3H5CA 4KDSA 1YXAA 2WY1A 1DVMA 4R9IA 2WXZC 1E04I 3EVJI 4P0OA 1E05I 1SNGA 2HIJL 2PEEA 3KCGI 3NDDA 4AJTA 4P0FA 3FGQA 1DZGL 2QUGA 4ZK0A 1UHGA 1ATUA 1AZXI 2ARQA 3NDFA 3PB1I 3CVMA 4GA7A 2HIJI 2RIVA 3Q03A 9PAIA 3F5NA 1DZHL 4EB1I 1DZGI 2B5TI 1SEKA 1AS4A 1XU8A 1KCTA 3LW2A 4RO9A 4IF8A 1BY7A 4X30A 3PZFA 1LQ8A 1XQJA 3DRUA 2D26A 4AJUA 1QMNA 1A7CA 1M93B 1OO8A 2XN6A 4Y40A 1JMOA 5IO1A 2H4QA 1OVAB 1LK6I 2HI9A 3NDAA 2XN7A 4EB1L 1IZ2A 1OPHA 1D5SA 1JRRA 1DB2A 1OVAC 2VDXA 7APIA 4AU3B 1C5GA 2WXZA 1C8OA 2BEHI 1LJ5A 2H4RA 5CDZA 3CWLA 1JTIA 1K9OI 1ANTI 2B4XI 2WXXA 2XN3A 5BRRI 1WZ9A 5C98A 1B3KA 3STOA 4G8OA 3CAAA 8APIA 4C49A 2WY0C 1ATTA 3F1SA 3CWMA 1IMVA 1DVNA 2RIWA 5CDXA 1QLPA 4ROBA 2WXYC 1OYHI 9APIA 2VH4A 2PEFA 1T1FA 4IC0A 2WXWA 3OZQA 4C41A 3EOXA 2BEHL 4BB2A 3R4LA 4Y3KA 4ZK3A 2R9YA 3DRMA 1JJOC 2B4XL 5INWA 1ATHA 4YIAA 3UT3A 3B9FI 3Q02A 2CEOA 1F0CA 1HP7A 1OVAA 2ACHA 4AFXA 1R1LI 4DY7C 5CE0A 2ARRA 2OL2A 2ZV6A 4AU3A 4AU2A 1JMJA 2ZNHA 2GD4C 1OYHL 4AU4A 5HGCA 3DY0A 1BR8I 1MTPA 3ZHAA 2XN5A 3LE2A 5EI0A 1TB6I 1XQGA 2ANTI 3F02A 4DTEA 4CAAA 1SR5A 3T1PA 1QMBA 2VDYA 2V95A 1HLEA
chains in the Genus database with same CATH topology
1E03I 4PYWA 4AQHA 1DZHI 1JVQI 4RSQA 1PSIA 3DLWA 2DUTA 3NE4A 2OAYA 2H4PA 3VVJA 4G8RA 1EZXA 4DY0A 4ROAA 1NQ9I 1OC0A 3H5CA 4KDSA 1YXAA 2WY1A 1DVMA 4R9IA 2WXZC 1E04I 3EVJI 4P0OA 1E05I 1SNGA 2HIJL 2PEEA 3KCGI 3NDDA 4AJTA 4P0FA 3FGQA 1DZGL 2QUGA 4ZK0A 1UHGA 1ATUA 1AZXI 2ARQA 3NDFA 3PB1I 3CVMA 4GA7A 2HIJI 2RIVA 3Q03A 9PAIA 3F5NA 1DZHL 4EB1I 1DZGI 2B5TI 1SEKA 1AS4A 1XU8A 1KCTA 3LW2A 4RO9A 4IF8A 1BY7A 4X30A 3PZFA 1LQ8A 1XQJA 3DRUA 2D26A 4AJUA 1QMNA 1A7CA 1M93B 1OO8A 2XN6A 4Y40A 1JMOA 5IO1A 2H4QA 1OVAB 1LK6I 2HI9A 3NDAA 2XN7A 4EB1L 1IZ2A 1OPHA 1D5SA 1JRRA 1DB2A 1OVAC 2VDXA 7APIA 4AU3B 1C5GA 2WXZA 1C8OA 2BEHI 1LJ5A 2H4RA 5CDZA 3CWLA 1JTIA 1K9OI 1ANTI 2B4XI 2WXXA 2XN3A 5BRRI 1WZ9A 5C98A 1B3KA 3STOA 4G8OA 3CAAA 8APIA 4C49A 2WY0C 1ATTA 3F1SA 3CWMA 1IMVA 1DVNA 2RIWA 5CDXA 1QLPA 4ROBA 2WXYC 1OYHI 9APIA 2VH4A 2PEFA 1T1FA 4IC0A 2WXWA 3OZQA 4C41A 3EOXA 2BEHL 4BB2A 3R4LA 4Y3KA 4ZK3A 2R9YA 3DRMA 1JJOC 2B4XL 5INWA 1ATHA 4YIAA 3UT3A 3B9FI 3Q02A 2CEOA 1F0CA 1HP7A 1OVAA 2ACHA 4AFXA 1R1LI 4DY7C 5CE0A 2ARRA 2OL2A 2ZV6A 4AU3A 4AU2A 1JMJA 2ZNHA 2GD4C 1OYHL 4AU4A 5HGCA 3DY0A 1BR8I 1MTPA 3ZHAA 2XN5A 3LE2A 5EI0A 1TB6I 1XQGA 2ANTI 3F02A 4DTEA 4CAAA 1SR5A 3T1PA 1QMBA 2VDYA 2V95A 1HLEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E03 I;  4PYW A;  4AQH A;  1DZH I;  1JVQ I;  4RSQ A;  1PSI A;  3DLW A;  2DUT A;  3NE4 A;  2OAY A;  2H4P A;  3VVJ A;  4G8R A;  1EZX A;  4DY0 A;  4ROA A;  1NQ9 I;  1OC0 A;  3H5C A;  4KDS A;  1YXA A;  2WY1 A;  1DVM A;  4R9I A;  2WXZ C;  1E04 I;  3EVJ I;  4P0O A;  1E05 I;  1SNG A;  2HIJ L;  2PEE A;  3KCG I;  3NDD A;  4AJT A;  4P0F A;  3FGQ A;  1DZG L;  2QUG A;  4ZK0 A;  1UHG A;  1ATU A;  1AZX I;  2ARQ A;  3NDF A;  3PB1 I;  3CVM A;  4GA7 A;  2HIJ I;  2RIV A;  3Q03 A;  9PAI A;  3F5N A;  1DZH L;  4EB1 I;  1DZG I;  2B5T I;  1SEK A;  1AS4 A;  1XU8 A;  1KCT A;  3LW2 A;  4RO9 A;  4IF8 A;  1BY7 A;  4X30 A;  3PZF A;  1LQ8 A;  1XQJ A;  3DRU A;  2D26 A;  4AJU A;  1QMN A;  1A7C A;  1M93 B;  1OO8 A;  2XN6 A;  4Y40 A;  1JMO A;  5IO1 A;  2H4Q A;  1OVA B;  1LK6 I;  2HI9 A;  3NDA A;  2XN7 A;  4EB1 L;  1IZ2 A;  1OPH A;  1D5S A;  1JRR A;  1DB2 A;  1OVA C;  2VDX A;  7API A;  4AU3 B;  1C5G A;  2WXZ A;  1C8O A;  2BEH I;  1LJ5 A;  2H4R A;  5CDZ A;  3CWL A;  1JTI A;  1K9O I;  1ANT I;  2B4X I;  2WXX A;  2XN3 A;  5BRR I;  1WZ9 A;  5C98 A;  1B3K A;  3STO A;  4G8O A;  3CAA A;  8API A;  4C49 A;  2WY0 C;  1ATT A;  3F1S A;  3CWM A;  1IMV A;  1DVN A;  2RIW A;  5CDX A;  1QLP A;  4ROB A;  2WXY C;  1OYH I;  9API A;  2VH4 A;  2PEF A;  1T1F A;  4IC0 A;  2WXW A;  3OZQ A;  4C41 A;  3EOX A;  2BEH L;  4BB2 A;  3R4L A;  4Y3K A;  4ZK3 A;  2R9Y A;  3DRM A;  1JJO C;  2B4X L;  5INW A;  1ATH A;  4YIA A;  3UT3 A;  3B9F I;  3Q02 A;  2CEO A;  1F0C A;  1HP7 A;  1OVA A;  2ACH A;  4AFX A;  1R1L I;  4DY7 C;  5CE0 A;  2ARR A;  2OL2 A;  2ZV6 A;  4AU3 A;  4AU2 A;  1JMJ A;  2ZNH A;  2GD4 C;  1OYH L;  4AU4 A;  5HGC A;  3DY0 A;  1BR8 I;  1MTP A;  3ZHA A;  2XN5 A;  3LE2 A;  5EI0 A;  1TB6 I;  1XQG A;  2ANT I;  3F02 A;  4DTE A;  4CAA A;  1SR5 A;  3T1P A;  1QMB A;  2VDY A;  2V95 A;  1HLE A; 
#chains in the Genus database with same CATH topology
 1E03 I;  4PYW A;  4AQH A;  1DZH I;  1JVQ I;  4RSQ A;  1PSI A;  3DLW A;  2DUT A;  3NE4 A;  2OAY A;  2H4P A;  3VVJ A;  4G8R A;  1EZX A;  4DY0 A;  4ROA A;  1NQ9 I;  1OC0 A;  3H5C A;  4KDS A;  1YXA A;  2WY1 A;  1DVM A;  4R9I A;  2WXZ C;  1E04 I;  3EVJ I;  4P0O A;  1E05 I;  1SNG A;  2HIJ L;  2PEE A;  3KCG I;  3NDD A;  4AJT A;  4P0F A;  3FGQ A;  1DZG L;  2QUG A;  4ZK0 A;  1UHG A;  1ATU A;  1AZX I;  2ARQ A;  3NDF A;  3PB1 I;  3CVM A;  4GA7 A;  2HIJ I;  2RIV A;  3Q03 A;  9PAI A;  3F5N A;  1DZH L;  4EB1 I;  1DZG I;  2B5T I;  1SEK A;  1AS4 A;  1XU8 A;  1KCT A;  3LW2 A;  4RO9 A;  4IF8 A;  1BY7 A;  4X30 A;  3PZF A;  1LQ8 A;  1XQJ A;  3DRU A;  2D26 A;  4AJU A;  1QMN A;  1A7C A;  1M93 B;  1OO8 A;  2XN6 A;  4Y40 A;  1JMO A;  5IO1 A;  2H4Q A;  1OVA B;  1LK6 I;  2HI9 A;  3NDA A;  2XN7 A;  4EB1 L;  1IZ2 A;  1OPH A;  1D5S A;  1JRR A;  1DB2 A;  1OVA C;  2VDX A;  7API A;  4AU3 B;  1C5G A;  2WXZ A;  1C8O A;  2BEH I;  1LJ5 A;  2H4R A;  5CDZ A;  3CWL A;  1JTI A;  1K9O I;  1ANT I;  2B4X I;  2WXX A;  2XN3 A;  5BRR I;  1WZ9 A;  5C98 A;  1B3K A;  3STO A;  4G8O A;  3CAA A;  8API A;  4C49 A;  2WY0 C;  1ATT A;  3F1S A;  3CWM A;  1IMV A;  1DVN A;  2RIW A;  5CDX A;  1QLP A;  4ROB A;  2WXY C;  1OYH I;  9API A;  2VH4 A;  2PEF A;  1T1F A;  4IC0 A;  2WXW A;  3OZQ A;  4C41 A;  3EOX A;  2BEH L;  4BB2 A;  3R4L A;  4Y3K A;  4ZK3 A;  2R9Y A;  3DRM A;  1JJO C;  2B4X L;  5INW A;  1ATH A;  4YIA A;  3UT3 A;  3B9F I;  3Q02 A;  2CEO A;  1F0C A;  1HP7 A;  1OVA A;  2ACH A;  4AFX A;  1R1L I;  4DY7 C;  5CE0 A;  2ARR A;  2OL2 A;  2ZV6 A;  4AU3 A;  4AU2 A;  1JMJ A;  2ZNH A;  2GD4 C;  1OYH L;  4AU4 A;  5HGC A;  3DY0 A;  1BR8 I;  1MTP A;  3ZHA A;  2XN5 A;  3LE2 A;  5EI0 A;  1TB6 I;  1XQG A;  2ANT I;  3F02 A;  4DTE A;  4CAA A;  1SR5 A;  3T1P A;  1QMB A;  2VDY A;  2V95 A;  1HLE A; 
#chains in the Genus database with same CATH homology
 1E03 I;  4PYW A;  4AQH A;  1DZH I;  1JVQ I;  4RSQ A;  1PSI A;  3DLW A;  2DUT A;  3NE4 A;  2OAY A;  2H4P A;  3VVJ A;  4G8R A;  1EZX A;  4DY0 A;  4ROA A;  1NQ9 I;  1OC0 A;  3H5C A;  4KDS A;  1YXA A;  2WY1 A;  1DVM A;  4R9I A;  2WXZ C;  1E04 I;  3EVJ I;  4P0O A;  1E05 I;  1SNG A;  2HIJ L;  2PEE A;  3KCG I;  3NDD A;  4AJT A;  4P0F A;  3FGQ A;  1DZG L;  2QUG A;  4ZK0 A;  1UHG A;  1ATU A;  1AZX I;  2ARQ A;  3NDF A;  3PB1 I;  3CVM A;  4GA7 A;  2HIJ I;  2RIV A;  3Q03 A;  9PAI A;  3F5N A;  1DZH L;  4EB1 I;  1DZG I;  2B5T I;  1SEK A;  1AS4 A;  1XU8 A;  1KCT A;  3LW2 A;  4RO9 A;  4IF8 A;  1BY7 A;  4X30 A;  3PZF A;  1LQ8 A;  1XQJ A;  3DRU A;  2D26 A;  4AJU A;  1QMN A;  1A7C A;  1M93 B;  1OO8 A;  2XN6 A;  4Y40 A;  1JMO A;  5IO1 A;  2H4Q A;  1OVA B;  1LK6 I;  2HI9 A;  3NDA A;  2XN7 A;  4EB1 L;  1IZ2 A;  1OPH A;  1D5S A;  1JRR A;  1DB2 A;  1OVA C;  2VDX A;  7API A;  4AU3 B;  1C5G A;  2WXZ A;  1C8O A;  2BEH I;  1LJ5 A;  2H4R A;  5CDZ A;  3CWL A;  1JTI A;  1K9O I;  1ANT I;  2B4X I;  2WXX A;  2XN3 A;  5BRR I;  1WZ9 A;  5C98 A;  1B3K A;  3STO A;  4G8O A;  3CAA A;  8API A;  4C49 A;  2WY0 C;  1ATT A;  3F1S A;  3CWM A;  1IMV A;  1DVN A;  2RIW A;  5CDX A;  1QLP A;  4ROB A;  2WXY C;  1OYH I;  9API A;  2VH4 A;  2PEF A;  1T1F A;  4IC0 A;  2WXW A;  3OZQ A;  4C41 A;  3EOX A;  2BEH L;  4BB2 A;  3R4L A;  4Y3K A;  4ZK3 A;  2R9Y A;  3DRM A;  1JJO C;  2B4X L;  5INW A;  1ATH A;  4YIA A;  3UT3 A;  3B9F I;  3Q02 A;  2CEO A;  1F0C A;  1HP7 A;  1OVA A;  2ACH A;  4AFX A;  1R1L I;  4DY7 C;  5CE0 A;  2ARR A;  2OL2 A;  2ZV6 A;  4AU3 A;  4AU2 A;  1JMJ A;  2ZNH A;  2GD4 C;  1OYH L;  4AU4 A;  5HGC A;  3DY0 A;  1BR8 I;  1MTP A;  3ZHA A;  2XN5 A;  3LE2 A;  5EI0 A;  1TB6 I;  1XQG A;  2ANT I;  3F02 A;  4DTE A;  4CAA A;  1SR5 A;  3T1P A;  1QMB A;  2VDY A;  2V95 A;  1HLE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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