1OVAC

Crystal structure of uncleaved ovalbumin at 1.95 angstroms resolution
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
385
structure length
373
Chain Sequence
GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVHSSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNVLQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMSMLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAESLKISQAVHAAHAEINEAGREVVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Serpin
molecule keywords OVALBUMIN
publication title Crystal structure of uncleaved ovalbumin at 1.95 A resolution.
pubmed doi rcsb
source organism Gallus gallus
total genus 105
structure length 373
sequence length 385
chains with identical sequence D
ec nomenclature
pdb deposition date 1990-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1ovaC01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1ovaC02
1K9OI 5C98A 3CWMA 1JRRA 3VVJA 4AQHA 1D5SA 1KCTA 4EB1L 4G8RA 2OL2A 1ATHA 4Y3KA 1IMVA 1OC0A 2VH4A 1QLPA 1M93B 1A7CA 3T1PA 4IC0A 4AU2A 1AZXI 1ATTA 2ACHA 5BRRI 5IO1A 3DY0A 2V95A 2QUGA 1DVNA 3DLWA 4DY7C 1E05I 2XN5A 2VDYA 1R1LI 4R9IA 1OYHI 2R9YA 1F0CA 9PAIA 3EOXA 5CDZA 4CAAA 1ANTI 1AS4A 1JMOA 1JMJA 2PEFA 1TB6I 2WXWA 2XN6A 1XQGA 4AU4A 4RSQA 4C41A 1SEKA 1XQJA 2HIJL 4KDSA 1DB2A 1EZXA 2B5TI 2DUTA 1OYHL 1YXAA 7APIA 3EVJI 3OZQA 4P0FA 4ROBA 4AU3B 3FGQA 3NDAA 3ZHAA 1SR5A 2PEEA 1DVMA 1DZGI 2ARRA 1C8OA 2CEOA 1T1FA 1NQ9I 8APIA 3LW2A 2ARQA 4AFXA 1XU8A 2OAYA 4BB2A 5CDXA 3Q02A 4C49A 3F02A 2H4QA 2ANTI 3DRMA 2RIVA 1E03I 1JJOC 1ATUA 1B3KA 1UHGA 4Y40A 2XN7A 2BEHI 3H5CA 1DZGL 1BR8I 2XN3A 3Q03A 4RO9A 5CE0A 2WXZA 1SNGA 2VDXA 1QMNA 1LK6I 1PSIA 2ZNHA 2B4XI 3UT3A 1LJ5A 3STOA 3LE2A 4IF8A 5HGCA 1OO8A 2WXYC 1DZHI 2HI9A 4DY0A 1E04I 1JTIA 4X30A 4GA7A 1OPHA 3CWLA 3NDDA 5EI0A 1WZ9A 2GD4C 3PZFA 1BY7A 2WXZC 5INWA 1MTPA 2ZV6A 9APIA 4YIAA 1OVAA 2B4XL 2WXXA 1QMBA 2WY1A 3PB1I 1JVQI 3KCGI 3NDFA 1DZHL 2D26A 2H4RA 2H4PA 1IZ2A 1HLEA 4PYWA 3DRUA 1HP7A 3F1SA 1LQ8A 2RIWA 3R4LA 3CVMA 3B9FI 4ZK3A 4AJUA 2HIJI 4DTEA 1C5GA 4EB1I 4AJTA 4AU3A 4P0OA 4ROAA 3F5NA 4ZK0A 3NE4A 3CAAA 2BEHL 1OVAB 2WY0C 4G8OA 1OVAC
chains in the Genus database with same CATH superfamily
1K9OI 5C98A 3CWMA 1JRRA 3VVJA 4AQHA 1D5SA 1KCTA 4EB1L 4G8RA 2OL2A 1ATHA 4Y3KA 1IMVA 1OC0A 2VH4A 1QLPA 1M93B 1A7CA 3T1PA 4IC0A 4AU2A 1AZXI 1ATTA 2ACHA 5BRRI 5IO1A 3DY0A 2V95A 2QUGA 1DVNA 3DLWA 4DY7C 1E05I 2XN5A 2VDYA 1R1LI 4R9IA 1OYHI 2R9YA 1F0CA 9PAIA 3EOXA 5CDZA 4CAAA 1ANTI 1AS4A 1JMOA 1JMJA 2PEFA 1TB6I 2WXWA 2XN6A 1XQGA 4AU4A 4RSQA 4C41A 1SEKA 1XQJA 2HIJL 4KDSA 1DB2A 1EZXA 2B5TI 2DUTA 1OYHL 1YXAA 7APIA 3EVJI 3OZQA 4P0FA 4ROBA 4AU3B 3FGQA 3NDAA 3ZHAA 1SR5A 2PEEA 1DVMA 1DZGI 2ARRA 1C8OA 2CEOA 1T1FA 1NQ9I 8APIA 3LW2A 2ARQA 4AFXA 1XU8A 2OAYA 4BB2A 5CDXA 3Q02A 4C49A 3F02A 2H4QA 2ANTI 3DRMA 2RIVA 1E03I 1JJOC 1ATUA 1B3KA 1UHGA 4Y40A 2XN7A 2BEHI 3H5CA 1DZGL 1BR8I 2XN3A 3Q03A 4RO9A 5CE0A 2WXZA 1SNGA 2VDXA 1QMNA 1LK6I 1PSIA 2ZNHA 2B4XI 3UT3A 1LJ5A 3STOA 3LE2A 4IF8A 5HGCA 1OO8A 2WXYC 1DZHI 2HI9A 4DY0A 1E04I 1JTIA 4X30A 4GA7A 1OPHA 3CWLA 3NDDA 5EI0A 1WZ9A 2GD4C 3PZFA 1BY7A 2WXZC 5INWA 1MTPA 2ZV6A 9APIA 4YIAA 1OVAA 2B4XL 2WXXA 1QMBA 2WY1A 3PB1I 1JVQI 3KCGI 3NDFA 1DZHL 2D26A 2H4RA 2H4PA 1IZ2A 1HLEA 4PYWA 3DRUA 1HP7A 3F1SA 1LQ8A 2RIWA 3R4LA 3CVMA 3B9FI 4ZK3A 4AJUA 2HIJI 4DTEA 1C5GA 4EB1I 4AJTA 4AU3A 4P0OA 4ROAA 3F5NA 4ZK0A 3NE4A 3CAAA 2BEHL 1OVAB 2WY0C 4G8OA 1OVAC
chains in the Genus database with same CATH topology
1K9OI 5C98A 3CWMA 1JRRA 3VVJA 4AQHA 1D5SA 1KCTA 4EB1L 4G8RA 2OL2A 1ATHA 4Y3KA 1IMVA 1OC0A 2VH4A 1QLPA 1M93B 1A7CA 3T1PA 4IC0A 4AU2A 1AZXI 1ATTA 2ACHA 5BRRI 5IO1A 3DY0A 2V95A 2QUGA 1DVNA 3DLWA 4DY7C 1E05I 2XN5A 2VDYA 1R1LI 4R9IA 1OYHI 2R9YA 1F0CA 9PAIA 3EOXA 5CDZA 4CAAA 1ANTI 1AS4A 1JMOA 1JMJA 2PEFA 1TB6I 2WXWA 2XN6A 1XQGA 4AU4A 4RSQA 4C41A 1SEKA 1XQJA 2HIJL 4KDSA 1DB2A 1EZXA 2B5TI 2DUTA 1OYHL 1YXAA 7APIA 3EVJI 3OZQA 4P0FA 4ROBA 4AU3B 3FGQA 3NDAA 3ZHAA 1SR5A 2PEEA 1DVMA 1DZGI 2ARRA 1C8OA 2CEOA 1T1FA 1NQ9I 8APIA 3LW2A 2ARQA 4AFXA 1XU8A 2OAYA 4BB2A 5CDXA 3Q02A 4C49A 3F02A 2H4QA 2ANTI 3DRMA 2RIVA 1E03I 1JJOC 1ATUA 1B3KA 1UHGA 4Y40A 2XN7A 2BEHI 3H5CA 1DZGL 1BR8I 2XN3A 3Q03A 4RO9A 5CE0A 2WXZA 1SNGA 2VDXA 1QMNA 1LK6I 1PSIA 2ZNHA 2B4XI 3UT3A 1LJ5A 3STOA 3LE2A 4IF8A 5HGCA 1OO8A 2WXYC 1DZHI 2HI9A 4DY0A 1E04I 1JTIA 4X30A 4GA7A 1OPHA 3CWLA 3NDDA 5EI0A 1WZ9A 2GD4C 3PZFA 1BY7A 2WXZC 5INWA 1MTPA 2ZV6A 9APIA 4YIAA 1OVAA 2B4XL 2WXXA 1QMBA 2WY1A 3PB1I 1JVQI 3KCGI 3NDFA 1DZHL 2D26A 2H4RA 2H4PA 1IZ2A 1HLEA 4PYWA 3DRUA 1HP7A 3F1SA 1LQ8A 2RIWA 3R4LA 3CVMA 3B9FI 4ZK3A 4AJUA 2HIJI 4DTEA 1C5GA 4EB1I 4AJTA 4AU3A 4P0OA 4ROAA 3F5NA 4ZK0A 3NE4A 3CAAA 2BEHL 1OVAB 2WY0C 4G8OA 1OVAC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K9O I;  5C98 A;  3CWM A;  1JRR A;  3VVJ A;  4AQH A;  1D5S A;  1KCT A;  4EB1 L;  4G8R A;  2OL2 A;  1ATH A;  4Y3K A;  1IMV A;  1OC0 A;  2VH4 A;  1QLP A;  1M93 B;  1A7C A;  3T1P A;  4IC0 A;  4AU2 A;  1AZX I;  1ATT A;  2ACH A;  5BRR I;  5IO1 A;  3DY0 A;  2V95 A;  2QUG A;  1DVN A;  3DLW A;  4DY7 C;  1E05 I;  2XN5 A;  2VDY A;  1R1L I;  4R9I A;  1OYH I;  2R9Y A;  1F0C A;  9PAI A;  3EOX A;  5CDZ A;  4CAA A;  1ANT I;  1AS4 A;  1JMO A;  1JMJ A;  2PEF A;  1TB6 I;  2WXW A;  2XN6 A;  1XQG A;  4AU4 A;  4RSQ A;  4C41 A;  1SEK A;  1XQJ A;  2HIJ L;  4KDS A;  1DB2 A;  1EZX A;  2B5T I;  2DUT A;  1OYH L;  1YXA A;  7API A;  3EVJ I;  3OZQ A;  4P0F A;  4ROB A;  4AU3 B;  3FGQ A;  3NDA A;  3ZHA A;  1SR5 A;  2PEE A;  1DVM A;  1DZG I;  2ARR A;  1C8O A;  2CEO A;  1T1F A;  1NQ9 I;  8API A;  3LW2 A;  2ARQ A;  4AFX A;  1XU8 A;  2OAY A;  4BB2 A;  5CDX A;  3Q02 A;  4C49 A;  3F02 A;  2H4Q A;  2ANT I;  3DRM A;  2RIV A;  1E03 I;  1JJO C;  1ATU A;  1B3K A;  1UHG A;  4Y40 A;  2XN7 A;  2BEH I;  3H5C A;  1DZG L;  1BR8 I;  2XN3 A;  3Q03 A;  4RO9 A;  5CE0 A;  2WXZ A;  1SNG A;  2VDX A;  1QMN A;  1LK6 I;  1PSI A;  2ZNH A;  2B4X I;  3UT3 A;  1LJ5 A;  3STO A;  3LE2 A;  4IF8 A;  5HGC A;  1OO8 A;  2WXY C;  1DZH I;  2HI9 A;  4DY0 A;  1E04 I;  1JTI A;  4X30 A;  4GA7 A;  1OPH A;  3CWL A;  3NDD A;  5EI0 A;  1WZ9 A;  2GD4 C;  3PZF A;  1BY7 A;  2WXZ C;  5INW A;  1MTP A;  2ZV6 A;  9API A;  4YIA A;  1OVA A;  2B4X L;  2WXX A;  1QMB A;  2WY1 A;  3PB1 I;  1JVQ I;  3KCG I;  3NDF A;  1DZH L;  2D26 A;  2H4R A;  2H4P A;  1IZ2 A;  1HLE A;  4PYW A;  3DRU A;  1HP7 A;  3F1S A;  1LQ8 A;  2RIW A;  3R4L A;  3CVM A;  3B9F I;  4ZK3 A;  4AJU A;  2HIJ I;  4DTE A;  1C5G A;  4EB1 I;  4AJT A;  4AU3 A;  4P0O A;  4ROA A;  3F5N A;  4ZK0 A;  3NE4 A;  3CAA A;  2BEH L;  1OVA B;  2WY0 C;  4G8O A;  1OVA C; 
#chains in the Genus database with same CATH topology
 1K9O I;  5C98 A;  3CWM A;  1JRR A;  3VVJ A;  4AQH A;  1D5S A;  1KCT A;  4EB1 L;  4G8R A;  2OL2 A;  1ATH A;  4Y3K A;  1IMV A;  1OC0 A;  2VH4 A;  1QLP A;  1M93 B;  1A7C A;  3T1P A;  4IC0 A;  4AU2 A;  1AZX I;  1ATT A;  2ACH A;  5BRR I;  5IO1 A;  3DY0 A;  2V95 A;  2QUG A;  1DVN A;  3DLW A;  4DY7 C;  1E05 I;  2XN5 A;  2VDY A;  1R1L I;  4R9I A;  1OYH I;  2R9Y A;  1F0C A;  9PAI A;  3EOX A;  5CDZ A;  4CAA A;  1ANT I;  1AS4 A;  1JMO A;  1JMJ A;  2PEF A;  1TB6 I;  2WXW A;  2XN6 A;  1XQG A;  4AU4 A;  4RSQ A;  4C41 A;  1SEK A;  1XQJ A;  2HIJ L;  4KDS A;  1DB2 A;  1EZX A;  2B5T I;  2DUT A;  1OYH L;  1YXA A;  7API A;  3EVJ I;  3OZQ A;  4P0F A;  4ROB A;  4AU3 B;  3FGQ A;  3NDA A;  3ZHA A;  1SR5 A;  2PEE A;  1DVM A;  1DZG I;  2ARR A;  1C8O A;  2CEO A;  1T1F A;  1NQ9 I;  8API A;  3LW2 A;  2ARQ A;  4AFX A;  1XU8 A;  2OAY A;  4BB2 A;  5CDX A;  3Q02 A;  4C49 A;  3F02 A;  2H4Q A;  2ANT I;  3DRM A;  2RIV A;  1E03 I;  1JJO C;  1ATU A;  1B3K A;  1UHG A;  4Y40 A;  2XN7 A;  2BEH I;  3H5C A;  1DZG L;  1BR8 I;  2XN3 A;  3Q03 A;  4RO9 A;  5CE0 A;  2WXZ A;  1SNG A;  2VDX A;  1QMN A;  1LK6 I;  1PSI A;  2ZNH A;  2B4X I;  3UT3 A;  1LJ5 A;  3STO A;  3LE2 A;  4IF8 A;  5HGC A;  1OO8 A;  2WXY C;  1DZH I;  2HI9 A;  4DY0 A;  1E04 I;  1JTI A;  4X30 A;  4GA7 A;  1OPH A;  3CWL A;  3NDD A;  5EI0 A;  1WZ9 A;  2GD4 C;  3PZF A;  1BY7 A;  2WXZ C;  5INW A;  1MTP A;  2ZV6 A;  9API A;  4YIA A;  1OVA A;  2B4X L;  2WXX A;  1QMB A;  2WY1 A;  3PB1 I;  1JVQ I;  3KCG I;  3NDF A;  1DZH L;  2D26 A;  2H4R A;  2H4P A;  1IZ2 A;  1HLE A;  4PYW A;  3DRU A;  1HP7 A;  3F1S A;  1LQ8 A;  2RIW A;  3R4L A;  3CVM A;  3B9F I;  4ZK3 A;  4AJU A;  2HIJ I;  4DTE A;  1C5G A;  4EB1 I;  4AJT A;  4AU3 A;  4P0O A;  4ROA A;  3F5N A;  4ZK0 A;  3NE4 A;  3CAA A;  2BEH L;  1OVA B;  2WY0 C;  4G8O A;  1OVA C; 
#chains in the Genus database with same CATH homology
 1K9O I;  5C98 A;  3CWM A;  1JRR A;  3VVJ A;  4AQH A;  1D5S A;  1KCT A;  4EB1 L;  4G8R A;  2OL2 A;  1ATH A;  4Y3K A;  1IMV A;  1OC0 A;  2VH4 A;  1QLP A;  1M93 B;  1A7C A;  3T1P A;  4IC0 A;  4AU2 A;  1AZX I;  1ATT A;  2ACH A;  5BRR I;  5IO1 A;  3DY0 A;  2V95 A;  2QUG A;  1DVN A;  3DLW A;  4DY7 C;  1E05 I;  2XN5 A;  2VDY A;  1R1L I;  4R9I A;  1OYH I;  2R9Y A;  1F0C A;  9PAI A;  3EOX A;  5CDZ A;  4CAA A;  1ANT I;  1AS4 A;  1JMO A;  1JMJ A;  2PEF A;  1TB6 I;  2WXW A;  2XN6 A;  1XQG A;  4AU4 A;  4RSQ A;  4C41 A;  1SEK A;  1XQJ A;  2HIJ L;  4KDS A;  1DB2 A;  1EZX A;  2B5T I;  2DUT A;  1OYH L;  1YXA A;  7API A;  3EVJ I;  3OZQ A;  4P0F A;  4ROB A;  4AU3 B;  3FGQ A;  3NDA A;  3ZHA A;  1SR5 A;  2PEE A;  1DVM A;  1DZG I;  2ARR A;  1C8O A;  2CEO A;  1T1F A;  1NQ9 I;  8API A;  3LW2 A;  2ARQ A;  4AFX A;  1XU8 A;  2OAY A;  4BB2 A;  5CDX A;  3Q02 A;  4C49 A;  3F02 A;  2H4Q A;  2ANT I;  3DRM A;  2RIV A;  1E03 I;  1JJO C;  1ATU A;  1B3K A;  1UHG A;  4Y40 A;  2XN7 A;  2BEH I;  3H5C A;  1DZG L;  1BR8 I;  2XN3 A;  3Q03 A;  4RO9 A;  5CE0 A;  2WXZ A;  1SNG A;  2VDX A;  1QMN A;  1LK6 I;  1PSI A;  2ZNH A;  2B4X I;  3UT3 A;  1LJ5 A;  3STO A;  3LE2 A;  4IF8 A;  5HGC A;  1OO8 A;  2WXY C;  1DZH I;  2HI9 A;  4DY0 A;  1E04 I;  1JTI A;  4X30 A;  4GA7 A;  1OPH A;  3CWL A;  3NDD A;  5EI0 A;  1WZ9 A;  2GD4 C;  3PZF A;  1BY7 A;  2WXZ C;  5INW A;  1MTP A;  2ZV6 A;  9API A;  4YIA A;  1OVA A;  2B4X L;  2WXX A;  1QMB A;  2WY1 A;  3PB1 I;  1JVQ I;  3KCG I;  3NDF A;  1DZH L;  2D26 A;  2H4R A;  2H4P A;  1IZ2 A;  1HLE A;  4PYW A;  3DRU A;  1HP7 A;  3F1S A;  1LQ8 A;  2RIW A;  3R4L A;  3CVM A;  3B9F I;  4ZK3 A;  4AJU A;  2HIJ I;  4DTE A;  1C5G A;  4EB1 I;  4AJT A;  4AU3 A;  4P0O A;  4ROA A;  3F5N A;  4ZK0 A;  3NE4 A;  3CAA A;  2BEH L;  1OVA B;  2WY0 C;  4G8O A;  1OVA C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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