1OYHI

Crystal structure of p13 alanine variant of antithrombin
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
427
structure length
416
Chain Sequence
VDICTAKPRDIPMNPMCIYRSPEKIPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGSAAAASTAVVIAGRSLNPNRVTFKANRPFLVFIREVPLNTIIFMGRVANPCV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords Antithrombin-III
publication title The influence of hinge region residue Glu-381 on antithrombin allostery and metastability
pubmed doi rcsb
source organism Homo sapiens
total genus 115
structure length 416
sequence length 427
ec nomenclature
pdb deposition date 2003-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1oyhI01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1oyhI02
1XU8A 9PAIA 1R1LI 2PEEA 3EVJI 1AZXI 3R4LA 1XQJA 2PEFA 1OVAA 2H4QA 3F1SA 3NDFA 1LQ8A 1QMBA 4YIAA 1ATUA 1DZGL 3PZFA 1OC0A 2RIVA 1ATHA 4AFXA 2HIJI 1JJOC 2R9YA 4EB1L 1QMNA 2BEHL 3CWLA 1SNGA 3DRMA 3OZQA 4KDSA 4Y40A 5C98A 4AU3A 5INWA 4AJTA 2B5TI 4RSQA 3EOXA 4AQHA 3Q02A 1JRRA 2H4PA 4ROAA 4ZK3A 3T1PA 3ZHAA 1PSIA 4DTEA 2CEOA 2WXZA 3NE4A 4X30A 1DVNA 1SEKA 2ARRA 3CWMA 2HI9A 3UT3A 2OL2A 5EI0A 1OYHI 4DY7C 1JVQI 3DLWA 1JMOA 2ANTI 2ARQA 2V95A 4GA7A 1D5SA 1UHGA 1XQGA 1MTPA 5CDXA 1DVMA 1LJ5A 1DB2A 8APIA 1DZGI 4C49A 5CE0A 1BY7A 4G8RA 1ANTI 4P0FA 1E05I 1EZXA 4EB1I 2BEHI 4BB2A 2WXWA 1IZ2A 1T1FA 1F0CA 1NQ9I 1OPHA 2H4RA 2OAYA 4ZK0A 2D26A 4Y3KA 1OO8A 1OVAB 1C8OA 2VDYA 1OVAC 3Q03A 2RIWA 2WY1A 1JTIA 2GD4C 1BR8I 1A7CA 5IO1A 4PYWA 2ACHA 2WXXA 3VVJA 1C5GA 4AU3B 1AS4A 4IF8A 1DZHL 4ROBA 4C41A 1TB6I 4R9IA 4AJUA 2B4XL 2ZNHA 3F5NA 2WXZC 2VH4A 2XN6A 1JMJA 3NDAA 4CAAA 7APIA 1K9OI 2DUTA 1E04I 2VDXA 2QUGA 3KCGI 4AU2A 2ZV6A 3B9FI 1QLPA 2WY0C 5CDZA 1HP7A 1IMVA 2XN3A 1HLEA 1B3KA 3DRUA 4AU4A 3CVMA 4P0OA 3NDDA 2HIJL 3CAAA 4IC0A 2XN7A 3STOA 3LE2A 4G8OA 1M93B 1YXAA 1SR5A 3H5CA 2WXYC 3LW2A 1DZHI 1WZ9A 4RO9A 1KCTA 1LK6I 2B4XI 1ATTA 1E03I 3FGQA 2XN5A 3PB1I 3DY0A 1OYHL 4DY0A 9APIA 5HGCA 3F02A 5BRRI
chains in the Genus database with same CATH superfamily
1XU8A 9PAIA 1R1LI 2PEEA 3EVJI 1AZXI 3R4LA 1XQJA 2PEFA 1OVAA 2H4QA 3F1SA 3NDFA 1LQ8A 1QMBA 4YIAA 1ATUA 1DZGL 3PZFA 1OC0A 2RIVA 1ATHA 4AFXA 2HIJI 1JJOC 2R9YA 4EB1L 1QMNA 2BEHL 3CWLA 1SNGA 3DRMA 3OZQA 4KDSA 4Y40A 5C98A 4AU3A 5INWA 4AJTA 2B5TI 4RSQA 3EOXA 4AQHA 3Q02A 1JRRA 2H4PA 4ROAA 4ZK3A 3T1PA 3ZHAA 1PSIA 4DTEA 2CEOA 2WXZA 3NE4A 4X30A 1DVNA 1SEKA 2ARRA 3CWMA 2HI9A 3UT3A 2OL2A 5EI0A 1OYHI 4DY7C 1JVQI 3DLWA 1JMOA 2ANTI 2ARQA 2V95A 4GA7A 1D5SA 1UHGA 1XQGA 1MTPA 5CDXA 1DVMA 1LJ5A 1DB2A 8APIA 1DZGI 4C49A 5CE0A 1BY7A 4G8RA 1ANTI 4P0FA 1E05I 1EZXA 4EB1I 2BEHI 4BB2A 2WXWA 1IZ2A 1T1FA 1F0CA 1NQ9I 1OPHA 2H4RA 2OAYA 4ZK0A 2D26A 4Y3KA 1OO8A 1OVAB 1C8OA 2VDYA 1OVAC 3Q03A 2RIWA 2WY1A 1JTIA 2GD4C 1BR8I 1A7CA 5IO1A 4PYWA 2ACHA 2WXXA 3VVJA 1C5GA 4AU3B 1AS4A 4IF8A 1DZHL 4ROBA 4C41A 1TB6I 4R9IA 4AJUA 2B4XL 2ZNHA 3F5NA 2WXZC 2VH4A 2XN6A 1JMJA 3NDAA 4CAAA 7APIA 1K9OI 2DUTA 1E04I 2VDXA 2QUGA 3KCGI 4AU2A 2ZV6A 3B9FI 1QLPA 2WY0C 5CDZA 1HP7A 1IMVA 2XN3A 1HLEA 1B3KA 3DRUA 4AU4A 3CVMA 4P0OA 3NDDA 2HIJL 3CAAA 4IC0A 2XN7A 3STOA 3LE2A 4G8OA 1M93B 1YXAA 1SR5A 3H5CA 2WXYC 3LW2A 1DZHI 1WZ9A 4RO9A 1KCTA 1LK6I 2B4XI 1ATTA 1E03I 3FGQA 2XN5A 3PB1I 3DY0A 1OYHL 4DY0A 9APIA 5HGCA 3F02A 5BRRI
chains in the Genus database with same CATH topology
1XU8A 9PAIA 1R1LI 2PEEA 3EVJI 1AZXI 3R4LA 1XQJA 2PEFA 1OVAA 2H4QA 3F1SA 3NDFA 1LQ8A 1QMBA 4YIAA 1ATUA 1DZGL 3PZFA 1OC0A 2RIVA 1ATHA 4AFXA 2HIJI 1JJOC 2R9YA 4EB1L 1QMNA 2BEHL 3CWLA 1SNGA 3DRMA 3OZQA 4KDSA 4Y40A 5C98A 4AU3A 5INWA 4AJTA 2B5TI 4RSQA 3EOXA 4AQHA 3Q02A 1JRRA 2H4PA 4ROAA 4ZK3A 3T1PA 3ZHAA 1PSIA 4DTEA 2CEOA 2WXZA 3NE4A 4X30A 1DVNA 1SEKA 2ARRA 3CWMA 2HI9A 3UT3A 2OL2A 5EI0A 1OYHI 4DY7C 1JVQI 3DLWA 1JMOA 2ANTI 2ARQA 2V95A 4GA7A 1D5SA 1UHGA 1XQGA 1MTPA 5CDXA 1DVMA 1LJ5A 1DB2A 8APIA 1DZGI 4C49A 5CE0A 1BY7A 4G8RA 1ANTI 4P0FA 1E05I 1EZXA 4EB1I 2BEHI 4BB2A 2WXWA 1IZ2A 1T1FA 1F0CA 1NQ9I 1OPHA 2H4RA 2OAYA 4ZK0A 2D26A 4Y3KA 1OO8A 1OVAB 1C8OA 2VDYA 1OVAC 3Q03A 2RIWA 2WY1A 1JTIA 2GD4C 1BR8I 1A7CA 5IO1A 4PYWA 2ACHA 2WXXA 3VVJA 1C5GA 4AU3B 1AS4A 4IF8A 1DZHL 4ROBA 4C41A 1TB6I 4R9IA 4AJUA 2B4XL 2ZNHA 3F5NA 2WXZC 2VH4A 2XN6A 1JMJA 3NDAA 4CAAA 7APIA 1K9OI 2DUTA 1E04I 2VDXA 2QUGA 3KCGI 4AU2A 2ZV6A 3B9FI 1QLPA 2WY0C 5CDZA 1HP7A 1IMVA 2XN3A 1HLEA 1B3KA 3DRUA 4AU4A 3CVMA 4P0OA 3NDDA 2HIJL 3CAAA 4IC0A 2XN7A 3STOA 3LE2A 4G8OA 1M93B 1YXAA 1SR5A 3H5CA 2WXYC 3LW2A 1DZHI 1WZ9A 4RO9A 1KCTA 1LK6I 2B4XI 1ATTA 1E03I 3FGQA 2XN5A 3PB1I 3DY0A 1OYHL 4DY0A 9APIA 5HGCA 3F02A 5BRRI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XU8 A;  9PAI A;  1R1L I;  2PEE A;  3EVJ I;  1AZX I;  3R4L A;  1XQJ A;  2PEF A;  1OVA A;  2H4Q A;  3F1S A;  3NDF A;  1LQ8 A;  1QMB A;  4YIA A;  1ATU A;  1DZG L;  3PZF A;  1OC0 A;  2RIV A;  1ATH A;  4AFX A;  2HIJ I;  1JJO C;  2R9Y A;  4EB1 L;  1QMN A;  2BEH L;  3CWL A;  1SNG A;  3DRM A;  3OZQ A;  4KDS A;  4Y40 A;  5C98 A;  4AU3 A;  5INW A;  4AJT A;  2B5T I;  4RSQ A;  3EOX A;  4AQH A;  3Q02 A;  1JRR A;  2H4P A;  4ROA A;  4ZK3 A;  3T1P A;  3ZHA A;  1PSI A;  4DTE A;  2CEO A;  2WXZ A;  3NE4 A;  4X30 A;  1DVN A;  1SEK A;  2ARR A;  3CWM A;  2HI9 A;  3UT3 A;  2OL2 A;  5EI0 A;  1OYH I;  4DY7 C;  1JVQ I;  3DLW A;  1JMO A;  2ANT I;  2ARQ A;  2V95 A;  4GA7 A;  1D5S A;  1UHG A;  1XQG A;  1MTP A;  5CDX A;  1DVM A;  1LJ5 A;  1DB2 A;  8API A;  1DZG I;  4C49 A;  5CE0 A;  1BY7 A;  4G8R A;  1ANT I;  4P0F A;  1E05 I;  1EZX A;  4EB1 I;  2BEH I;  4BB2 A;  2WXW A;  1IZ2 A;  1T1F A;  1F0C A;  1NQ9 I;  1OPH A;  2H4R A;  2OAY A;  4ZK0 A;  2D26 A;  4Y3K A;  1OO8 A;  1OVA B;  1C8O A;  2VDY A;  1OVA C;  3Q03 A;  2RIW A;  2WY1 A;  1JTI A;  2GD4 C;  1BR8 I;  1A7C A;  5IO1 A;  4PYW A;  2ACH A;  2WXX A;  3VVJ A;  1C5G A;  4AU3 B;  1AS4 A;  4IF8 A;  1DZH L;  4ROB A;  4C41 A;  1TB6 I;  4R9I A;  4AJU A;  2B4X L;  2ZNH A;  3F5N A;  2WXZ C;  2VH4 A;  2XN6 A;  1JMJ A;  3NDA A;  4CAA A;  7API A;  1K9O I;  2DUT A;  1E04 I;  2VDX A;  2QUG A;  3KCG I;  4AU2 A;  2ZV6 A;  3B9F I;  1QLP A;  2WY0 C;  5CDZ A;  1HP7 A;  1IMV A;  2XN3 A;  1HLE A;  1B3K A;  3DRU A;  4AU4 A;  3CVM A;  4P0O A;  3NDD A;  2HIJ L;  3CAA A;  4IC0 A;  2XN7 A;  3STO A;  3LE2 A;  4G8O A;  1M93 B;  1YXA A;  1SR5 A;  3H5C A;  2WXY C;  3LW2 A;  1DZH I;  1WZ9 A;  4RO9 A;  1KCT A;  1LK6 I;  2B4X I;  1ATT A;  1E03 I;  3FGQ A;  2XN5 A;  3PB1 I;  3DY0 A;  1OYH L;  4DY0 A;  9API A;  5HGC A;  3F02 A;  5BRR I; 
#chains in the Genus database with same CATH topology
 1XU8 A;  9PAI A;  1R1L I;  2PEE A;  3EVJ I;  1AZX I;  3R4L A;  1XQJ A;  2PEF A;  1OVA A;  2H4Q A;  3F1S A;  3NDF A;  1LQ8 A;  1QMB A;  4YIA A;  1ATU A;  1DZG L;  3PZF A;  1OC0 A;  2RIV A;  1ATH A;  4AFX A;  2HIJ I;  1JJO C;  2R9Y A;  4EB1 L;  1QMN A;  2BEH L;  3CWL A;  1SNG A;  3DRM A;  3OZQ A;  4KDS A;  4Y40 A;  5C98 A;  4AU3 A;  5INW A;  4AJT A;  2B5T I;  4RSQ A;  3EOX A;  4AQH A;  3Q02 A;  1JRR A;  2H4P A;  4ROA A;  4ZK3 A;  3T1P A;  3ZHA A;  1PSI A;  4DTE A;  2CEO A;  2WXZ A;  3NE4 A;  4X30 A;  1DVN A;  1SEK A;  2ARR A;  3CWM A;  2HI9 A;  3UT3 A;  2OL2 A;  5EI0 A;  1OYH I;  4DY7 C;  1JVQ I;  3DLW A;  1JMO A;  2ANT I;  2ARQ A;  2V95 A;  4GA7 A;  1D5S A;  1UHG A;  1XQG A;  1MTP A;  5CDX A;  1DVM A;  1LJ5 A;  1DB2 A;  8API A;  1DZG I;  4C49 A;  5CE0 A;  1BY7 A;  4G8R A;  1ANT I;  4P0F A;  1E05 I;  1EZX A;  4EB1 I;  2BEH I;  4BB2 A;  2WXW A;  1IZ2 A;  1T1F A;  1F0C A;  1NQ9 I;  1OPH A;  2H4R A;  2OAY A;  4ZK0 A;  2D26 A;  4Y3K A;  1OO8 A;  1OVA B;  1C8O A;  2VDY A;  1OVA C;  3Q03 A;  2RIW A;  2WY1 A;  1JTI A;  2GD4 C;  1BR8 I;  1A7C A;  5IO1 A;  4PYW A;  2ACH A;  2WXX A;  3VVJ A;  1C5G A;  4AU3 B;  1AS4 A;  4IF8 A;  1DZH L;  4ROB A;  4C41 A;  1TB6 I;  4R9I A;  4AJU A;  2B4X L;  2ZNH A;  3F5N A;  2WXZ C;  2VH4 A;  2XN6 A;  1JMJ A;  3NDA A;  4CAA A;  7API A;  1K9O I;  2DUT A;  1E04 I;  2VDX A;  2QUG A;  3KCG I;  4AU2 A;  2ZV6 A;  3B9F I;  1QLP A;  2WY0 C;  5CDZ A;  1HP7 A;  1IMV A;  2XN3 A;  1HLE A;  1B3K A;  3DRU A;  4AU4 A;  3CVM A;  4P0O A;  3NDD A;  2HIJ L;  3CAA A;  4IC0 A;  2XN7 A;  3STO A;  3LE2 A;  4G8O A;  1M93 B;  1YXA A;  1SR5 A;  3H5C A;  2WXY C;  3LW2 A;  1DZH I;  1WZ9 A;  4RO9 A;  1KCT A;  1LK6 I;  2B4X I;  1ATT A;  1E03 I;  3FGQ A;  2XN5 A;  3PB1 I;  3DY0 A;  1OYH L;  4DY0 A;  9API A;  5HGC A;  3F02 A;  5BRR I; 
#chains in the Genus database with same CATH homology
 1XU8 A;  9PAI A;  1R1L I;  2PEE A;  3EVJ I;  1AZX I;  3R4L A;  1XQJ A;  2PEF A;  1OVA A;  2H4Q A;  3F1S A;  3NDF A;  1LQ8 A;  1QMB A;  4YIA A;  1ATU A;  1DZG L;  3PZF A;  1OC0 A;  2RIV A;  1ATH A;  4AFX A;  2HIJ I;  1JJO C;  2R9Y A;  4EB1 L;  1QMN A;  2BEH L;  3CWL A;  1SNG A;  3DRM A;  3OZQ A;  4KDS A;  4Y40 A;  5C98 A;  4AU3 A;  5INW A;  4AJT A;  2B5T I;  4RSQ A;  3EOX A;  4AQH A;  3Q02 A;  1JRR A;  2H4P A;  4ROA A;  4ZK3 A;  3T1P A;  3ZHA A;  1PSI A;  4DTE A;  2CEO A;  2WXZ A;  3NE4 A;  4X30 A;  1DVN A;  1SEK A;  2ARR A;  3CWM A;  2HI9 A;  3UT3 A;  2OL2 A;  5EI0 A;  1OYH I;  4DY7 C;  1JVQ I;  3DLW A;  1JMO A;  2ANT I;  2ARQ A;  2V95 A;  4GA7 A;  1D5S A;  1UHG A;  1XQG A;  1MTP A;  5CDX A;  1DVM A;  1LJ5 A;  1DB2 A;  8API A;  1DZG I;  4C49 A;  5CE0 A;  1BY7 A;  4G8R A;  1ANT I;  4P0F A;  1E05 I;  1EZX A;  4EB1 I;  2BEH I;  4BB2 A;  2WXW A;  1IZ2 A;  1T1F A;  1F0C A;  1NQ9 I;  1OPH A;  2H4R A;  2OAY A;  4ZK0 A;  2D26 A;  4Y3K A;  1OO8 A;  1OVA B;  1C8O A;  2VDY A;  1OVA C;  3Q03 A;  2RIW A;  2WY1 A;  1JTI A;  2GD4 C;  1BR8 I;  1A7C A;  5IO1 A;  4PYW A;  2ACH A;  2WXX A;  3VVJ A;  1C5G A;  4AU3 B;  1AS4 A;  4IF8 A;  1DZH L;  4ROB A;  4C41 A;  1TB6 I;  4R9I A;  4AJU A;  2B4X L;  2ZNH A;  3F5N A;  2WXZ C;  2VH4 A;  2XN6 A;  1JMJ A;  3NDA A;  4CAA A;  7API A;  1K9O I;  2DUT A;  1E04 I;  2VDX A;  2QUG A;  3KCG I;  4AU2 A;  2ZV6 A;  3B9F I;  1QLP A;  2WY0 C;  5CDZ A;  1HP7 A;  1IMV A;  2XN3 A;  1HLE A;  1B3K A;  3DRU A;  4AU4 A;  3CVM A;  4P0O A;  3NDD A;  2HIJ L;  3CAA A;  4IC0 A;  2XN7 A;  3STO A;  3LE2 A;  4G8O A;  1M93 B;  1YXA A;  1SR5 A;  3H5C A;  2WXY C;  3LW2 A;  1DZH I;  1WZ9 A;  4RO9 A;  1KCT A;  1LK6 I;  2B4X I;  1ATT A;  1E03 I;  3FGQ A;  2XN5 A;  3PB1 I;  3DY0 A;  1OYH L;  4DY0 A;  9API A;  5HGC A;  3F02 A;  5BRR I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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