1OYHL

Crystal structure of p13 alanine variant of antithrombin
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
426
structure length
410
Chain Sequence
VDICTAKPRDIPMNPMCIYRSPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKSSKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMYQEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLVVHMPRFRIEDGFSLKEQLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGSEAAASTAVVIAGRSLNPRVTFKANRPFLVFIREVPLNTIIFMGRVANPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords Antithrombin-III
publication title The influence of hinge region residue Glu-381 on antithrombin allostery and metastability
pubmed doi rcsb
source organism Homo sapiens
total genus 121
structure length 410
sequence length 426
ec nomenclature
pdb deposition date 2003-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1oyhL01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1oyhL02
4KDSA 2HI9A 1LJ5A 2RIWA 2WXWA 4G8OA 2WXYC 3F1SA 1DZHI 4EB1I 1OVAC 2D26A 5C98A 3Q02A 1WZ9A 3NDDA 4AU2A 1EZXA 1JMJA 4RO9A 3CWLA 3DRUA 5CDXA 2HIJI 2ZNHA 1AZXI 2QUGA 4AU3A 1NQ9I 4P0OA 8APIA 4GA7A 1OYHI 2ARRA 3B9FI 3DLWA 1T1FA 5BRRI 1BR8I 1JVQI 2XN3A 3STOA 2VDXA 4PYWA 1SEKA 4IF8A 5INWA 1OVAB 4CAAA 5CE0A 7APIA 1DZHL 4EB1L 2R9YA 4G8RA 1OO8A 4ZK3A 3NE4A 3H5CA 2WXZA 2H4PA 4AJTA 1DB2A 2ZV6A 2HIJL 1XQGA 4X30A 2ACHA 1DVNA 1AS4A 3CAAA 1E05I 4ROAA 3VVJA 5IO1A 4ROBA 4Y40A 1JTIA 1OYHL 3LE2A 4YIAA 3UT3A 4AU4A 9APIA 2BEHI 2XN5A 3CWMA 2V95A 4DY7C 4RSQA 2WXZC 4AQHA 4DY0A 1ATUA 3NDAA 2RIVA 3Q03A 2ANTI 4AJUA 1TB6I 1XU8A 3F02A 1LK6I 1R1LI 1JMOA 1HLEA 3F5NA 1SR5A 4C41A 1QLPA 1M93B 2CEOA 2B5TI 2WXXA 1DZGI 2H4RA 3R4LA 1C5GA 2DUTA 3DRMA 1K9OI 3PB1I 9PAIA 1B3KA 5HGCA 1OC0A 1SNGA 1IZ2A 3EVJI 1A7CA 1OPHA 2B4XI 1JJOC 3EOXA 2OAYA 1LQ8A 1PSIA 2BEHL 3OZQA 1BY7A 2GD4C 4Y3KA 1MTPA 1HP7A 1ATHA 2OL2A 1C8OA 4AU3B 3KCGI 5EI0A 1XQJA 2XN7A 4P0FA 1QMNA 2WY1A 4BB2A 3FGQA 1ANTI 1YXAA 4IC0A 1ATTA 1QMBA 3T1PA 1DZGL 1UHGA 2VH4A 2XN6A 1D5SA 4DTEA 1OVAA 1KCTA 5CDZA 2PEEA 2H4QA 1F0CA 1E03I 1JRRA 3NDFA 4AFXA 2ARQA 2VDYA 4R9IA 3CVMA 3ZHAA 3DY0A 4ZK0A 3LW2A 4C49A 3PZFA 1IMVA 1E04I 2B4XL 2PEFA 1DVMA 2WY0C
chains in the Genus database with same CATH superfamily
4KDSA 2HI9A 1LJ5A 2RIWA 2WXWA 4G8OA 2WXYC 3F1SA 1DZHI 4EB1I 1OVAC 2D26A 5C98A 3Q02A 1WZ9A 3NDDA 4AU2A 1EZXA 1JMJA 4RO9A 3CWLA 3DRUA 5CDXA 2HIJI 2ZNHA 1AZXI 2QUGA 4AU3A 1NQ9I 4P0OA 8APIA 4GA7A 1OYHI 2ARRA 3B9FI 3DLWA 1T1FA 5BRRI 1BR8I 1JVQI 2XN3A 3STOA 2VDXA 4PYWA 1SEKA 4IF8A 5INWA 1OVAB 4CAAA 5CE0A 7APIA 1DZHL 4EB1L 2R9YA 4G8RA 1OO8A 4ZK3A 3NE4A 3H5CA 2WXZA 2H4PA 4AJTA 1DB2A 2ZV6A 2HIJL 1XQGA 4X30A 2ACHA 1DVNA 1AS4A 3CAAA 1E05I 4ROAA 3VVJA 5IO1A 4ROBA 4Y40A 1JTIA 1OYHL 3LE2A 4YIAA 3UT3A 4AU4A 9APIA 2BEHI 2XN5A 3CWMA 2V95A 4DY7C 4RSQA 2WXZC 4AQHA 4DY0A 1ATUA 3NDAA 2RIVA 3Q03A 2ANTI 4AJUA 1TB6I 1XU8A 3F02A 1LK6I 1R1LI 1JMOA 1HLEA 3F5NA 1SR5A 4C41A 1QLPA 1M93B 2CEOA 2B5TI 2WXXA 1DZGI 2H4RA 3R4LA 1C5GA 2DUTA 3DRMA 1K9OI 3PB1I 9PAIA 1B3KA 5HGCA 1OC0A 1SNGA 1IZ2A 3EVJI 1A7CA 1OPHA 2B4XI 1JJOC 3EOXA 2OAYA 1LQ8A 1PSIA 2BEHL 3OZQA 1BY7A 2GD4C 4Y3KA 1MTPA 1HP7A 1ATHA 2OL2A 1C8OA 4AU3B 3KCGI 5EI0A 1XQJA 2XN7A 4P0FA 1QMNA 2WY1A 4BB2A 3FGQA 1ANTI 1YXAA 4IC0A 1ATTA 1QMBA 3T1PA 1DZGL 1UHGA 2VH4A 2XN6A 1D5SA 4DTEA 1OVAA 1KCTA 5CDZA 2PEEA 2H4QA 1F0CA 1E03I 1JRRA 3NDFA 4AFXA 2ARQA 2VDYA 4R9IA 3CVMA 3ZHAA 3DY0A 4ZK0A 3LW2A 4C49A 3PZFA 1IMVA 1E04I 2B4XL 2PEFA 1DVMA 2WY0C
chains in the Genus database with same CATH topology
4KDSA 2HI9A 1LJ5A 2RIWA 2WXWA 4G8OA 2WXYC 3F1SA 1DZHI 4EB1I 1OVAC 2D26A 5C98A 3Q02A 1WZ9A 3NDDA 4AU2A 1EZXA 1JMJA 4RO9A 3CWLA 3DRUA 5CDXA 2HIJI 2ZNHA 1AZXI 2QUGA 4AU3A 1NQ9I 4P0OA 8APIA 4GA7A 1OYHI 2ARRA 3B9FI 3DLWA 1T1FA 5BRRI 1BR8I 1JVQI 2XN3A 3STOA 2VDXA 4PYWA 1SEKA 4IF8A 5INWA 1OVAB 4CAAA 5CE0A 7APIA 1DZHL 4EB1L 2R9YA 4G8RA 1OO8A 4ZK3A 3NE4A 3H5CA 2WXZA 2H4PA 4AJTA 1DB2A 2ZV6A 2HIJL 1XQGA 4X30A 2ACHA 1DVNA 1AS4A 3CAAA 1E05I 4ROAA 3VVJA 5IO1A 4ROBA 4Y40A 1JTIA 1OYHL 3LE2A 4YIAA 3UT3A 4AU4A 9APIA 2BEHI 2XN5A 3CWMA 2V95A 4DY7C 4RSQA 2WXZC 4AQHA 4DY0A 1ATUA 3NDAA 2RIVA 3Q03A 2ANTI 4AJUA 1TB6I 1XU8A 3F02A 1LK6I 1R1LI 1JMOA 1HLEA 3F5NA 1SR5A 4C41A 1QLPA 1M93B 2CEOA 2B5TI 2WXXA 1DZGI 2H4RA 3R4LA 1C5GA 2DUTA 3DRMA 1K9OI 3PB1I 9PAIA 1B3KA 5HGCA 1OC0A 1SNGA 1IZ2A 3EVJI 1A7CA 1OPHA 2B4XI 1JJOC 3EOXA 2OAYA 1LQ8A 1PSIA 2BEHL 3OZQA 1BY7A 2GD4C 4Y3KA 1MTPA 1HP7A 1ATHA 2OL2A 1C8OA 4AU3B 3KCGI 5EI0A 1XQJA 2XN7A 4P0FA 1QMNA 2WY1A 4BB2A 3FGQA 1ANTI 1YXAA 4IC0A 1ATTA 1QMBA 3T1PA 1DZGL 1UHGA 2VH4A 2XN6A 1D5SA 4DTEA 1OVAA 1KCTA 5CDZA 2PEEA 2H4QA 1F0CA 1E03I 1JRRA 3NDFA 4AFXA 2ARQA 2VDYA 4R9IA 3CVMA 3ZHAA 3DY0A 4ZK0A 3LW2A 4C49A 3PZFA 1IMVA 1E04I 2B4XL 2PEFA 1DVMA 2WY0C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KDS A;  2HI9 A;  1LJ5 A;  2RIW A;  2WXW A;  4G8O A;  2WXY C;  3F1S A;  1DZH I;  4EB1 I;  1OVA C;  2D26 A;  5C98 A;  3Q02 A;  1WZ9 A;  3NDD A;  4AU2 A;  1EZX A;  1JMJ A;  4RO9 A;  3CWL A;  3DRU A;  5CDX A;  2HIJ I;  2ZNH A;  1AZX I;  2QUG A;  4AU3 A;  1NQ9 I;  4P0O A;  8API A;  4GA7 A;  1OYH I;  2ARR A;  3B9F I;  3DLW A;  1T1F A;  5BRR I;  1BR8 I;  1JVQ I;  2XN3 A;  3STO A;  2VDX A;  4PYW A;  1SEK A;  4IF8 A;  5INW A;  1OVA B;  4CAA A;  5CE0 A;  7API A;  1DZH L;  4EB1 L;  2R9Y A;  4G8R A;  1OO8 A;  4ZK3 A;  3NE4 A;  3H5C A;  2WXZ A;  2H4P A;  4AJT A;  1DB2 A;  2ZV6 A;  2HIJ L;  1XQG A;  4X30 A;  2ACH A;  1DVN A;  1AS4 A;  3CAA A;  1E05 I;  4ROA A;  3VVJ A;  5IO1 A;  4ROB A;  4Y40 A;  1JTI A;  1OYH L;  3LE2 A;  4YIA A;  3UT3 A;  4AU4 A;  9API A;  2BEH I;  2XN5 A;  3CWM A;  2V95 A;  4DY7 C;  4RSQ A;  2WXZ C;  4AQH A;  4DY0 A;  1ATU A;  3NDA A;  2RIV A;  3Q03 A;  2ANT I;  4AJU A;  1TB6 I;  1XU8 A;  3F02 A;  1LK6 I;  1R1L I;  1JMO A;  1HLE A;  3F5N A;  1SR5 A;  4C41 A;  1QLP A;  1M93 B;  2CEO A;  2B5T I;  2WXX A;  1DZG I;  2H4R A;  3R4L A;  1C5G A;  2DUT A;  3DRM A;  1K9O I;  3PB1 I;  9PAI A;  1B3K A;  5HGC A;  1OC0 A;  1SNG A;  1IZ2 A;  3EVJ I;  1A7C A;  1OPH A;  2B4X I;  1JJO C;  3EOX A;  2OAY A;  1LQ8 A;  1PSI A;  2BEH L;  3OZQ A;  1BY7 A;  2GD4 C;  4Y3K A;  1MTP A;  1HP7 A;  1ATH A;  2OL2 A;  1C8O A;  4AU3 B;  3KCG I;  5EI0 A;  1XQJ A;  2XN7 A;  4P0F A;  1QMN A;  2WY1 A;  4BB2 A;  3FGQ A;  1ANT I;  1YXA A;  4IC0 A;  1ATT A;  1QMB A;  3T1P A;  1DZG L;  1UHG A;  2VH4 A;  2XN6 A;  1D5S A;  4DTE A;  1OVA A;  1KCT A;  5CDZ A;  2PEE A;  2H4Q A;  1F0C A;  1E03 I;  1JRR A;  3NDF A;  4AFX A;  2ARQ A;  2VDY A;  4R9I A;  3CVM A;  3ZHA A;  3DY0 A;  4ZK0 A;  3LW2 A;  4C49 A;  3PZF A;  1IMV A;  1E04 I;  2B4X L;  2PEF A;  1DVM A;  2WY0 C; 
#chains in the Genus database with same CATH topology
 4KDS A;  2HI9 A;  1LJ5 A;  2RIW A;  2WXW A;  4G8O A;  2WXY C;  3F1S A;  1DZH I;  4EB1 I;  1OVA C;  2D26 A;  5C98 A;  3Q02 A;  1WZ9 A;  3NDD A;  4AU2 A;  1EZX A;  1JMJ A;  4RO9 A;  3CWL A;  3DRU A;  5CDX A;  2HIJ I;  2ZNH A;  1AZX I;  2QUG A;  4AU3 A;  1NQ9 I;  4P0O A;  8API A;  4GA7 A;  1OYH I;  2ARR A;  3B9F I;  3DLW A;  1T1F A;  5BRR I;  1BR8 I;  1JVQ I;  2XN3 A;  3STO A;  2VDX A;  4PYW A;  1SEK A;  4IF8 A;  5INW A;  1OVA B;  4CAA A;  5CE0 A;  7API A;  1DZH L;  4EB1 L;  2R9Y A;  4G8R A;  1OO8 A;  4ZK3 A;  3NE4 A;  3H5C A;  2WXZ A;  2H4P A;  4AJT A;  1DB2 A;  2ZV6 A;  2HIJ L;  1XQG A;  4X30 A;  2ACH A;  1DVN A;  1AS4 A;  3CAA A;  1E05 I;  4ROA A;  3VVJ A;  5IO1 A;  4ROB A;  4Y40 A;  1JTI A;  1OYH L;  3LE2 A;  4YIA A;  3UT3 A;  4AU4 A;  9API A;  2BEH I;  2XN5 A;  3CWM A;  2V95 A;  4DY7 C;  4RSQ A;  2WXZ C;  4AQH A;  4DY0 A;  1ATU A;  3NDA A;  2RIV A;  3Q03 A;  2ANT I;  4AJU A;  1TB6 I;  1XU8 A;  3F02 A;  1LK6 I;  1R1L I;  1JMO A;  1HLE A;  3F5N A;  1SR5 A;  4C41 A;  1QLP A;  1M93 B;  2CEO A;  2B5T I;  2WXX A;  1DZG I;  2H4R A;  3R4L A;  1C5G A;  2DUT A;  3DRM A;  1K9O I;  3PB1 I;  9PAI A;  1B3K A;  5HGC A;  1OC0 A;  1SNG A;  1IZ2 A;  3EVJ I;  1A7C A;  1OPH A;  2B4X I;  1JJO C;  3EOX A;  2OAY A;  1LQ8 A;  1PSI A;  2BEH L;  3OZQ A;  1BY7 A;  2GD4 C;  4Y3K A;  1MTP A;  1HP7 A;  1ATH A;  2OL2 A;  1C8O A;  4AU3 B;  3KCG I;  5EI0 A;  1XQJ A;  2XN7 A;  4P0F A;  1QMN A;  2WY1 A;  4BB2 A;  3FGQ A;  1ANT I;  1YXA A;  4IC0 A;  1ATT A;  1QMB A;  3T1P A;  1DZG L;  1UHG A;  2VH4 A;  2XN6 A;  1D5S A;  4DTE A;  1OVA A;  1KCT A;  5CDZ A;  2PEE A;  2H4Q A;  1F0C A;  1E03 I;  1JRR A;  3NDF A;  4AFX A;  2ARQ A;  2VDY A;  4R9I A;  3CVM A;  3ZHA A;  3DY0 A;  4ZK0 A;  3LW2 A;  4C49 A;  3PZF A;  1IMV A;  1E04 I;  2B4X L;  2PEF A;  1DVM A;  2WY0 C; 
#chains in the Genus database with same CATH homology
 4KDS A;  2HI9 A;  1LJ5 A;  2RIW A;  2WXW A;  4G8O A;  2WXY C;  3F1S A;  1DZH I;  4EB1 I;  1OVA C;  2D26 A;  5C98 A;  3Q02 A;  1WZ9 A;  3NDD A;  4AU2 A;  1EZX A;  1JMJ A;  4RO9 A;  3CWL A;  3DRU A;  5CDX A;  2HIJ I;  2ZNH A;  1AZX I;  2QUG A;  4AU3 A;  1NQ9 I;  4P0O A;  8API A;  4GA7 A;  1OYH I;  2ARR A;  3B9F I;  3DLW A;  1T1F A;  5BRR I;  1BR8 I;  1JVQ I;  2XN3 A;  3STO A;  2VDX A;  4PYW A;  1SEK A;  4IF8 A;  5INW A;  1OVA B;  4CAA A;  5CE0 A;  7API A;  1DZH L;  4EB1 L;  2R9Y A;  4G8R A;  1OO8 A;  4ZK3 A;  3NE4 A;  3H5C A;  2WXZ A;  2H4P A;  4AJT A;  1DB2 A;  2ZV6 A;  2HIJ L;  1XQG A;  4X30 A;  2ACH A;  1DVN A;  1AS4 A;  3CAA A;  1E05 I;  4ROA A;  3VVJ A;  5IO1 A;  4ROB A;  4Y40 A;  1JTI A;  1OYH L;  3LE2 A;  4YIA A;  3UT3 A;  4AU4 A;  9API A;  2BEH I;  2XN5 A;  3CWM A;  2V95 A;  4DY7 C;  4RSQ A;  2WXZ C;  4AQH A;  4DY0 A;  1ATU A;  3NDA A;  2RIV A;  3Q03 A;  2ANT I;  4AJU A;  1TB6 I;  1XU8 A;  3F02 A;  1LK6 I;  1R1L I;  1JMO A;  1HLE A;  3F5N A;  1SR5 A;  4C41 A;  1QLP A;  1M93 B;  2CEO A;  2B5T I;  2WXX A;  1DZG I;  2H4R A;  3R4L A;  1C5G A;  2DUT A;  3DRM A;  1K9O I;  3PB1 I;  9PAI A;  1B3K A;  5HGC A;  1OC0 A;  1SNG A;  1IZ2 A;  3EVJ I;  1A7C A;  1OPH A;  2B4X I;  1JJO C;  3EOX A;  2OAY A;  1LQ8 A;  1PSI A;  2BEH L;  3OZQ A;  1BY7 A;  2GD4 C;  4Y3K A;  1MTP A;  1HP7 A;  1ATH A;  2OL2 A;  1C8O A;  4AU3 B;  3KCG I;  5EI0 A;  1XQJ A;  2XN7 A;  4P0F A;  1QMN A;  2WY1 A;  4BB2 A;  3FGQ A;  1ANT I;  1YXA A;  4IC0 A;  1ATT A;  1QMB A;  3T1P A;  1DZG L;  1UHG A;  2VH4 A;  2XN6 A;  1D5S A;  4DTE A;  1OVA A;  1KCT A;  5CDZ A;  2PEE A;  2H4Q A;  1F0C A;  1E03 I;  1JRR A;  3NDF A;  4AFX A;  2ARQ A;  2VDY A;  4R9I A;  3CVM A;  3ZHA A;  3DY0 A;  4ZK0 A;  3LW2 A;  4C49 A;  3PZF A;  1IMV A;  1E04 I;  2B4X L;  2PEF A;  1DVM A;  2WY0 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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