1P8QA

Structural and functional importance of first-shell metal ligands in the binuclear cluster of arginase i.
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVEGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase 1
publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I
pubmed doi rcsb
source organism Rattus norvegicus
total genus 109
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8qA00
1P8NA 1WVBA 1WOHA 3F80A 2PHOA 4RLAA 3GMZA 4Q3UA 4RHQA 4RHLA 1TBJA 1TBLA 4RHJA 5HJ9A 4Q3SA 5CEVA 3MJLA 1T4SA 1WOGA 4HZEA 3LHLA 3NIOA 4GSZA 1T5FA 3E9BA 4MYNA 3MFVA 1R1OA 3GN0A 4I06A 4GWCA 4IE2A 4IU1A 4Q40A 2EF4A 1T4RA 3LP7A 4Q3VA 1GQ7A 4IE3A 4CEVA 1T4TA 3E6VA 1ZPEA 1WVAA 4HWWA 1RLAA 4Q41A 1WOIA 4RHIA 1HQFA 1P8MA 4HXQA 2EIVA 4DZ4A 1T4PA 4Q3PA 4Q3RC 4IXUA 2RLAA 3MMRA 4Q42A 5RLAA 2CEVA 2EF5A 4Q3QA 3THHA 1HQHA 1P8SA 4IU5A 1HQ5A 1P8RA 3NIPA 1TBHA 3E8ZA 4G3HA 3TH7A 3DJ8A 4IXVA 5HJAA 1TA1A 4ITYA 2A0MA 3THEA 1P8PA 1P8OA 2ZAVA 1D3VA 4GSVA 4FCKA 3SL0A 3M1RA 4MYFA 1HQXA 3SKKA 3KV2A 1CEVA 4IE1A 4RHKA 4MXRA 3THJA 1XFKA 4FCIA 4IU4A 4MYKA 4GWDA 3E6KA 2PHAA 3RLAA 3TF3A 3E8QA 3NIQA 4Q3TA 3LP4A 4Q3RA 4MYLA 3PZLA 1HQGA 4IU0A 4GSMA 3SJTA 3MFWA 1P8QA 1PQ3A 2AEBA 1GQ6A 2PLLA 3CEVA 1T5GA 4RHMA 1ZPGA 3SL1A
chains in the Genus database with same CATH superfamily
1P8NA 1WVBA 1WOHA 3F80A 5THUA 4A69A 2PHOA 1W22A 4RLAA 4ZUPA 3GMZA 4BZ5A 4Q3UA 4RHQA 4ZUQA 4RHLA 5EEIA 5THTA 1TBJA 5G12A 5EFJD 3F0RA 1TBLA 4RHJA 5HJ9A 4Q3SA 1VKGA 5CEVA 3MJLA 1T4SA 3Q9FA 1WOGA 4QA7A 5DC5A 4HZEA 4QA0A 3LHLA 4BZ8A 4CBTA 1ZZ1A 5THVA 4LY1A 1ZZ3A 5EFHA 4RN0A 3NIOA 5G1BA 5LI3A 4GSZA 5FCWA 1T5FA 3C10A 3E9BA 4QA6A 4MYNA 4ZUOA 3MFVA 4ZURA 1R1OA 3EWFA 3GN0A 1T64A 5ICNB 4I06A 3Q9BA 2VCGA 4GWCA 4IE2A 1T67A 4IU1A 4Q40A 2EF4A 1T4RA 3LP7A 3MZ7A 4Q3VA 5G11A 1GQ7A 4IE3A 4CEVA 4LXZA 1T4TA 3E6VA 5EFGA 4RN1A 5EEFA 3MZ4A 1ZPEA 5G13A 5IX0A 5EFBD 5G0HA 1WVAA 4HWWA 5DC8A 1RLAA 4Q41A 1WOIA 4BZ6A 3F06A 4QA3A 4RHIA 1HQFA 1P8MA 4HXQA 5G1CA 3Q9EA 3Q9CA 3SFHA 3RQDA 2EIVA 4DZ4A 1T4PA 5DC7A 4Q3PA 4BZ9A 4CQFA 1T69A 4Q3RC 4IXUA 1C3PA 2RLAA 3MMRA 4Q42A 2VQOA 5RLAA 2CEVA 2EF5A 3C0ZA 5G0YA 5G17A 4Q3QA 4ZUMA 3THHA 1HQHA 1P8SA 3MZ3A 2VQVA 4IU5A 1HQ5A 3C0YA 1P8RA 4RN2A 5EF7A 3NIPA 1TBHA 3E8ZA 1C3SA 4G3HA 5G0JA 3DJ8A 3MENA 4IXVA 2VQWG 5G10A 3TH7A 5HJAA 5EF8A 5EFNA 1TA1A 2V5XA 4ITYA 2A0MA 3EW8A 1P8PA 4QA2A 1P8OA 5G1AA 3THEA 2VQMA 2ZAVA 1D3VA 3EZTA 4GSVA 3ZNSA 4FCKA 3SL0A 3M1RA 4MYFA 3SFFA 1HQXA 5G0XA 4QA1A 3SKKA 2VQJA 3KV2A 5A2SA 5FUEA 5BWZA 1CEVA 4IE1A 4RHKA 3EZPA 4MXRA 3THJA 3F07A 1XFKA 4FCIA 4IU4A 4MYKA 4BKXB 4GWDA 3E6KA 2PHAA 5EFKB 4QA4A 1ZZ0A 5EENA 5DC6A 3RLAA 5JI5A 3TF3A 3E8QA 3NIQA 5G3WA 4Q3TA 5D1DA 4CBYA 3LP4A 4Q3RA 4MYLA 4ZUNA 3PZLA 1HQGA 4IU0A 5D1BA 2V5WA 4QA5A 2VQQA 4GSMA 2GH6A 3SJTA 3MFWA 3ZNRA 1P8QA 1PQ3A 2AEBA 1GQ6A 2PLLA 5D1CA 5IWGA 3MZ6A 5EEMA 3CEVA 5EEKA 5G0IA 5THSA 1T5GA 4RHMA 3MAXA 1ZPGA 4BZ7A 1C3RA 5G0GA 3SL1A
chains in the Genus database with same CATH topology
1P8NA 1WVBA 1WOHA 3F80A 2PHOA 4RLAA 3GMZA 4Q3UA 4RHQA 4RHLA 1TBJA 1TBLA 4RHJA 5HJ9A 4Q3SA 5CEVA 3MJLA 1T4SA 1WOGA 4HZEA 3LHLA 3NIOA 4GSZA 1T5FA 3E9BA 4MYNA 3MFVA 1R1OA 3GN0A 4I06A 4GWCA 4IE2A 4IU1A 4Q40A 2EF4A 1T4RA 3LP7A 4Q3VA 1GQ7A 4IE3A 4CEVA 1T4TA 3E6VA 1ZPEA 1WVAA 4HWWA 1RLAA 4Q41A 1WOIA 4RHIA 1HQFA 1P8MA 4HXQA 2EIVA 4DZ4A 1T4PA 4Q3PA 4Q3RC 4IXUA 2RLAA 3MMRA 4Q42A 5RLAA 2CEVA 2EF5A 4Q3QA 3THHA 1HQHA 1P8SA 4IU5A 1HQ5A 1P8RA 3NIPA 1TBHA 3E8ZA 4G3HA 3TH7A 3DJ8A 4IXVA 5HJAA 1TA1A 4ITYA 2A0MA 3THEA 1P8PA 1P8OA 2ZAVA 1D3VA 4GSVA 4FCKA 3SL0A 3M1RA 4MYFA 1HQXA 3SKKA 3KV2A 1CEVA 4IE1A 4RHKA 4MXRA 3THJA 1XFKA 4FCIA 4IU4A 4MYKA 4GWDA 3E6KA 2PHAA 3RLAA 3TF3A 3E8QA 3NIQA 4Q3TA 3LP4A 4Q3RA 4MYLA 3PZLA 1HQGA 4IU0A 4GSMA 3SJTA 3MFWA 1P8QA 1PQ3A 2AEBA 1GQ6A 2PLLA 3CEVA 1T5GA 4RHMA 1ZPGA 3SL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P8N A;  1WVB A;  1WOH A;  3F80 A;  2PHO A;  4RLA A;  3GMZ A;  4Q3U A;  4RHQ A;  4RHL A;  1TBJ A;  1TBL A;  4RHJ A;  5HJ9 A;  4Q3S A;  5CEV A;  3MJL A;  1T4S A;  1WOG A;  4HZE A;  3LHL A;  3NIO A;  4GSZ A;  1T5F A;  3E9B A;  4MYN A;  3MFV A;  1R1O A;  3GN0 A;  4I06 A;  4GWC A;  4IE2 A;  4IU1 A;  4Q40 A;  2EF4 A;  1T4R A;  3LP7 A;  4Q3V A;  1GQ7 A;  4IE3 A;  4CEV A;  1T4T A;  3E6V A;  1ZPE A;  1WVA A;  4HWW A;  1RLA A;  4Q41 A;  1WOI A;  4RHI A;  1HQF A;  1P8M A;  4HXQ A;  2EIV A;  4DZ4 A;  1T4P A;  4Q3P A;  4Q3R C;  4IXU A;  2RLA A;  3MMR A;  4Q42 A;  5RLA A;  2CEV A;  2EF5 A;  4Q3Q A;  3THH A;  1HQH A;  1P8S A;  4IU5 A;  1HQ5 A;  1P8R A;  3NIP A;  1TBH A;  3E8Z A;  4G3H A;  3TH7 A;  3DJ8 A;  4IXV A;  5HJA A;  1TA1 A;  4ITY A;  2A0M A;  3THE A;  1P8P A;  1P8O A;  2ZAV A;  1D3V A;  4GSV A;  4FCK A;  3SL0 A;  3M1R A;  4MYF A;  1HQX A;  3SKK A;  3KV2 A;  1CEV A;  4IE1 A;  4RHK A;  4MXR A;  3THJ A;  1XFK A;  4FCI A;  4IU4 A;  4MYK A;  4GWD A;  3E6K A;  2PHA A;  3RLA A;  3TF3 A;  3E8Q A;  3NIQ A;  4Q3T A;  3LP4 A;  4Q3R A;  4MYL A;  3PZL A;  1HQG A;  4IU0 A;  4GSM A;  3SJT A;  3MFW A;  1P8Q A;  1PQ3 A;  2AEB A;  1GQ6 A;  2PLL A;  3CEV A;  1T5G A;  4RHM A;  1ZPG A;  3SL1 A; 
#chains in the Genus database with same CATH topology
 1P8N A;  1WVB A;  1WOH A;  3F80 A;  5THU A;  4A69 A;  2PHO A;  1W22 A;  4RLA A;  4ZUP A;  3GMZ A;  4BZ5 A;  4Q3U A;  4RHQ A;  4ZUQ A;  4RHL A;  5EEI A;  5THT A;  1TBJ A;  5G12 A;  5EFJ D;  3F0R A;  1TBL A;  4RHJ A;  5HJ9 A;  4Q3S A;  1VKG A;  5CEV A;  3MJL A;  1T4S A;  3Q9F A;  1WOG A;  4QA7 A;  5DC5 A;  4HZE A;  4QA0 A;  3LHL A;  4BZ8 A;  4CBT A;  1ZZ1 A;  5THV A;  4LY1 A;  1ZZ3 A;  5EFH A;  4RN0 A;  3NIO A;  5G1B A;  5LI3 A;  4GSZ A;  5FCW A;  1T5F A;  3C10 A;  3E9B A;  4QA6 A;  4MYN A;  4ZUO A;  3MFV A;  4ZUR A;  1R1O A;  3EWF A;  3GN0 A;  1T64 A;  5ICN B;  4I06 A;  3Q9B A;  2VCG A;  4GWC A;  4IE2 A;  1T67 A;  4IU1 A;  4Q40 A;  2EF4 A;  1T4R A;  3LP7 A;  3MZ7 A;  4Q3V A;  5G11 A;  1GQ7 A;  4IE3 A;  4CEV A;  4LXZ A;  1T4T A;  3E6V A;  5EFG A;  4RN1 A;  5EEF A;  3MZ4 A;  1ZPE A;  5G13 A;  5IX0 A;  5EFB D;  5G0H A;  1WVA A;  4HWW A;  5DC8 A;  1RLA A;  4Q41 A;  1WOI A;  4BZ6 A;  3F06 A;  4QA3 A;  4RHI A;  1HQF A;  1P8M A;  4HXQ A;  5G1C A;  3Q9E A;  3Q9C A;  3SFH A;  3RQD A;  2EIV A;  4DZ4 A;  1T4P A;  5DC7 A;  4Q3P A;  4BZ9 A;  4CQF A;  1T69 A;  4Q3R C;  4IXU A;  1C3P A;  2RLA A;  3MMR A;  4Q42 A;  2VQO A;  5RLA A;  2CEV A;  2EF5 A;  3C0Z A;  5G0Y A;  5G17 A;  4Q3Q A;  4ZUM A;  3THH A;  1HQH A;  1P8S A;  3MZ3 A;  2VQV A;  4IU5 A;  1HQ5 A;  3C0Y A;  1P8R A;  4RN2 A;  5EF7 A;  3NIP A;  1TBH A;  3E8Z A;  1C3S A;  4G3H A;  5G0J A;  3DJ8 A;  3MEN A;  4IXV A;  2VQW G;  5G10 A;  3TH7 A;  5HJA A;  5EF8 A;  5EFN A;  1TA1 A;  2V5X A;  4ITY A;  2A0M A;  3EW8 A;  1P8P A;  4QA2 A;  1P8O A;  5G1A A;  3THE A;  2VQM A;  2ZAV A;  1D3V A;  3EZT A;  4GSV A;  3ZNS A;  4FCK A;  3SL0 A;  3M1R A;  4MYF A;  3SFF A;  1HQX A;  5G0X A;  4QA1 A;  3SKK A;  2VQJ A;  3KV2 A;  5A2S A;  5FUE A;  5BWZ A;  1CEV A;  4IE1 A;  4RHK A;  3EZP A;  4MXR A;  3THJ A;  3F07 A;  1XFK A;  4FCI A;  4IU4 A;  4MYK A;  4BKX B;  4GWD A;  3E6K A;  2PHA A;  5EFK B;  4QA4 A;  1ZZ0 A;  5EEN A;  5DC6 A;  3RLA A;  5JI5 A;  3TF3 A;  3E8Q A;  3NIQ A;  5G3W A;  4Q3T A;  5D1D A;  4CBY A;  3LP4 A;  4Q3R A;  4MYL A;  4ZUN A;  3PZL A;  1HQG A;  4IU0 A;  5D1B A;  2V5W A;  4QA5 A;  2VQQ A;  4GSM A;  2GH6 A;  3SJT A;  3MFW A;  3ZNR A;  1P8Q A;  1PQ3 A;  2AEB A;  1GQ6 A;  2PLL A;  5D1C A;  5IWG A;  3MZ6 A;  5EEM A;  3CEV A;  5EEK A;  5G0I A;  5THS A;  1T5G A;  4RHM A;  3MAX A;  1ZPG A;  4BZ7 A;  1C3R A;  5G0G A;  3SL1 A; 
#chains in the Genus database with same CATH homology
 1P8N A;  1WVB A;  1WOH A;  3F80 A;  2PHO A;  4RLA A;  3GMZ A;  4Q3U A;  4RHQ A;  4RHL A;  1TBJ A;  1TBL A;  4RHJ A;  5HJ9 A;  4Q3S A;  5CEV A;  3MJL A;  1T4S A;  1WOG A;  4HZE A;  3LHL A;  3NIO A;  4GSZ A;  1T5F A;  3E9B A;  4MYN A;  3MFV A;  1R1O A;  3GN0 A;  4I06 A;  4GWC A;  4IE2 A;  4IU1 A;  4Q40 A;  2EF4 A;  1T4R A;  3LP7 A;  4Q3V A;  1GQ7 A;  4IE3 A;  4CEV A;  1T4T A;  3E6V A;  1ZPE A;  1WVA A;  4HWW A;  1RLA A;  4Q41 A;  1WOI A;  4RHI A;  1HQF A;  1P8M A;  4HXQ A;  2EIV A;  4DZ4 A;  1T4P A;  4Q3P A;  4Q3R C;  4IXU A;  2RLA A;  3MMR A;  4Q42 A;  5RLA A;  2CEV A;  2EF5 A;  4Q3Q A;  3THH A;  1HQH A;  1P8S A;  4IU5 A;  1HQ5 A;  1P8R A;  3NIP A;  1TBH A;  3E8Z A;  4G3H A;  3TH7 A;  3DJ8 A;  4IXV A;  5HJA A;  1TA1 A;  4ITY A;  2A0M A;  3THE A;  1P8P A;  1P8O A;  2ZAV A;  1D3V A;  4GSV A;  4FCK A;  3SL0 A;  3M1R A;  4MYF A;  1HQX A;  3SKK A;  3KV2 A;  1CEV A;  4IE1 A;  4RHK A;  4MXR A;  3THJ A;  1XFK A;  4FCI A;  4IU4 A;  4MYK A;  4GWD A;  3E6K A;  2PHA A;  3RLA A;  3TF3 A;  3E8Q A;  3NIQ A;  4Q3T A;  3LP4 A;  4Q3R A;  4MYL A;  3PZL A;  1HQG A;  4IU0 A;  4GSM A;  3SJT A;  3MFW A;  1P8Q A;  1PQ3 A;  2AEB A;  1GQ6 A;  2PLL A;  3CEV A;  1T5G A;  4RHM A;  1ZPG A;  3SL1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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