1P8SA

Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase i.
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFCVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase 1
publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I
pubmed doi rcsb
source organism Rattus norvegicus
total genus 101
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8sA00
4GWDA 1GQ7A 4FCKA 4RHQA 4Q3TA 3M1RA 1HQGA 4MYLA 3THHA 3THEA 3CEVA 4Q3VA 3E6KA 1HQ5A 4CEVA 5CEVA 4Q3RA 4I06A 4G3HA 1HQFA 4GSVA 4ITYA 1ZPGA 5HJ9A 1WVAA 3SJTA 3LHLA 1P8PA 1P8QA 3NIPA 1PQ3A 4IXUA 3GN0A 3KV2A 4IE1A 4Q40A 1HQXA 3E9BA 4RHIA 4IU0A 3LP7A 4Q3QA 4IU5A 3E8ZA 4DZ4A 4Q41A 2CEVA 4IU4A 3SL1A 2AEBA 1P8SA 4MYNA 4Q3PA 3MFVA 4RHLA 3SKKA 1T4SA 3MJLA 1T4PA 1CEVA 4MXRA 4GWCA 1T5GA 2PLLA 1P8NA 4IU1A 3NIOA 4Q3UA 3RLAA 4RHMA 4IE2A 4Q42A 4HXQA 3GMZA 3SL0A 4GSZA 1WOGA 3NIQA 4GSMA 3MMRA 2PHOA 1HQHA 2EIVA 3E6VA 5HJAA 1D3VA 2A0MA 2EF5A 2PHAA 3MFWA 1P8MA 4HZEA 5RLAA 4RLAA 1XFKA 4RHJA 1WOIA 1WOHA 4IE3A 3DJ8A 3LP4A 1P8RA 1GQ6A 4MYFA 3TF3A 1R1OA 3PZLA 1T4TA 4Q3RC 1TA1A 1T4RA 1TBLA 2EF4A 4IXVA 4HWWA 1TBJA 1RLAA 2ZAVA 3TH7A 2RLAA 4Q3SA 4MYKA 1ZPEA 1T5FA 3F80A 1P8OA 1TBHA 3THJA 4FCIA 1WVBA 4RHKA 3E8QA
chains in the Genus database with same CATH superfamily
4GWDA 1C3SA 5DC6A 5EEKA 1GQ7A 5G1AA 5THSA 4FCKA 2GH6A 4LY1A 3C0YA 4RHQA 4QA0A 2VQOA 4Q3TA 4RN0A 5IWGA 5G0HA 3M1RA 1HQGA 4MYLA 3F06A 3THHA 3Q9BA 5LI3A 1VKGA 3Q9EA 3THEA 3CEVA 4Q3VA 3E6KA 1HQ5A 3SFFA 4CEVA 5CEVA 4Q3RA 3MZ6A 5EFKB 5G13A 5D1CA 4I06A 3SFHA 4G3HA 5G0IA 1HQFA 2VQMA 5G0YA 4GSVA 4ITYA 3Q9CA 4BZ6A 1ZPGA 5FCWA 5EEFA 2VQJA 4BZ5A 5ICNB 5D1DA 5HJ9A 1WVAA 1T69A 3SJTA 3LHLA 4QA5A 1P8PA 1P8QA 3NIPA 5EENA 5G0JA 4CBTA 1PQ3A 4IXUA 5FUEA 3MZ3A 3GN0A 3KV2A 4QA6A 4IE1A 4Q40A 1HQXA 3E9BA 4RHIA 4IU0A 3LP7A 5A2SA 4Q3QA 4IU5A 4RHKA 1C3RA 5EEIA 4BKXB 5THVA 3E8ZA 4DZ4A 4Q41A 2CEVA 4IU4A 1ZZ0A 1C3PA 3SL1A 2AEBA 1P8SA 5G11A 3F0RA 4QA2A 4MYNA 5G12A 4Q3PA 5EFJD 5G1BA 3MFVA 4ZUQA 4CBYA 4RHLA 4FCIA 3SKKA 4BZ7A 4BZ9A 1T4SA 4QA7A 1T4PA 1CEVA 4MXRA 4ZUNA 4GWCA 4CQFA 1T64A 1T5GA 2PLLA 1P8NA 3C10A 3F07A 4IU1A 3NIOA 4BZ8A 4Q3UA 3MZ4A 4ZUPA 3RLAA 4RHMA 4IE2A 4Q42A 2VQQA 3EZTA 4HXQA 2V5XA 2V5WA 3GMZA 3SL0A 4GSZA 1WOGA 3MAXA 3NIQA 5DC5A 4GSMA 3MMRA 2PHOA 1HQHA 4RN1A 2EIVA 4QA1A 3E6VA 5DC8A 5EFGA 5HJAA 1D3VA 1ZZ1A 2A0MA 5G0GA 5G1CA 3RQDA 2EF5A 2PHAA 4ZUMA 3MFWA 3ZNRA 1P8MA 4HZEA 5RLAA 5DC7A 4RLAA 5EFHA 5EFNA 5EEMA 3MENA 2VQVA 1XFKA 4RHJA 4ZUOA 1WOIA 1WOHA 3C0ZA 3EWFA 4IE3A 3MZ7A 5G0XA 5G17A 3DJ8A 4QA4A 5THTA 4QA3A 3LP4A 1P8RA 1GQ6A 4MYFA 5EF7A 3ZNSA 1R1OA 4LXZA 4A69A 3PZLA 1T4TA 4RN2A 4Q3RC 3TF3A 1TA1A 1T4RA 1TBLA 2EF4A 4IXVA 4HWWA 5BWZA 5G10A 4ZURA 5G3WA 3EW8A 1TBJA 1RLAA 1ZZ3A 2VQWG 2ZAVA 5IX0A 5THUA 5D1BA 5EF8A 2RLAA 4Q3SA 3TH7A 4MYKA 1ZPEA 2VCGA 3Q9FA 1T5FA 1T67A 3F80A 1P8OA 1TBHA 5EFBD 3THJA 1W22A 3MJLA 1WVBA 5JI5A 3EZPA 3E8QA
chains in the Genus database with same CATH topology
4GWDA 1GQ7A 4FCKA 4RHQA 4Q3TA 3M1RA 1HQGA 4MYLA 3THHA 3THEA 3CEVA 4Q3VA 3E6KA 1HQ5A 4CEVA 5CEVA 4Q3RA 4I06A 4G3HA 1HQFA 4GSVA 4ITYA 1ZPGA 5HJ9A 1WVAA 3SJTA 3LHLA 1P8PA 1P8QA 3NIPA 1PQ3A 4IXUA 3GN0A 3KV2A 4IE1A 4Q40A 1HQXA 3E9BA 4RHIA 4IU0A 3LP7A 4Q3QA 4IU5A 3E8ZA 4DZ4A 4Q41A 2CEVA 4IU4A 3SL1A 2AEBA 1P8SA 4MYNA 4Q3PA 3MFVA 4RHLA 3SKKA 1T4SA 3MJLA 1T4PA 1CEVA 4MXRA 4GWCA 1T5GA 2PLLA 1P8NA 4IU1A 3NIOA 4Q3UA 3RLAA 4RHMA 4IE2A 4Q42A 4HXQA 3GMZA 3SL0A 4GSZA 1WOGA 3NIQA 4GSMA 3MMRA 2PHOA 1HQHA 2EIVA 3E6VA 5HJAA 1D3VA 2A0MA 2EF5A 2PHAA 3MFWA 1P8MA 4HZEA 5RLAA 4RLAA 1XFKA 4RHJA 1WOIA 1WOHA 4IE3A 3DJ8A 3LP4A 1P8RA 1GQ6A 4MYFA 3TF3A 1R1OA 3PZLA 1T4TA 4Q3RC 1TA1A 1T4RA 1TBLA 2EF4A 4IXVA 4HWWA 1TBJA 1RLAA 2ZAVA 3TH7A 2RLAA 4Q3SA 4MYKA 1ZPEA 1T5FA 3F80A 1P8OA 1TBHA 3THJA 4FCIA 1WVBA 4RHKA 3E8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GWD A;  1GQ7 A;  4FCK A;  4RHQ A;  4Q3T A;  3M1R A;  1HQG A;  4MYL A;  3THH A;  3THE A;  3CEV A;  4Q3V A;  3E6K A;  1HQ5 A;  4CEV A;  5CEV A;  4Q3R A;  4I06 A;  4G3H A;  1HQF A;  4GSV A;  4ITY A;  1ZPG A;  5HJ9 A;  1WVA A;  3SJT A;  3LHL A;  1P8P A;  1P8Q A;  3NIP A;  1PQ3 A;  4IXU A;  3GN0 A;  3KV2 A;  4IE1 A;  4Q40 A;  1HQX A;  3E9B A;  4RHI A;  4IU0 A;  3LP7 A;  4Q3Q A;  4IU5 A;  3E8Z A;  4DZ4 A;  4Q41 A;  2CEV A;  4IU4 A;  3SL1 A;  2AEB A;  1P8S A;  4MYN A;  4Q3P A;  3MFV A;  4RHL A;  3SKK A;  1T4S A;  3MJL A;  1T4P A;  1CEV A;  4MXR A;  4GWC A;  1T5G A;  2PLL A;  1P8N A;  4IU1 A;  3NIO A;  4Q3U A;  3RLA A;  4RHM A;  4IE2 A;  4Q42 A;  4HXQ A;  3GMZ A;  3SL0 A;  4GSZ A;  1WOG A;  3NIQ A;  4GSM A;  3MMR A;  2PHO A;  1HQH A;  2EIV A;  3E6V A;  5HJA A;  1D3V A;  2A0M A;  2EF5 A;  2PHA A;  3MFW A;  1P8M A;  4HZE A;  5RLA A;  4RLA A;  1XFK A;  4RHJ A;  1WOI A;  1WOH A;  4IE3 A;  3DJ8 A;  3LP4 A;  1P8R A;  1GQ6 A;  4MYF A;  3TF3 A;  1R1O A;  3PZL A;  1T4T A;  4Q3R C;  1TA1 A;  1T4R A;  1TBL A;  2EF4 A;  4IXV A;  4HWW A;  1TBJ A;  1RLA A;  2ZAV A;  3TH7 A;  2RLA A;  4Q3S A;  4MYK A;  1ZPE A;  1T5F A;  3F80 A;  1P8O A;  1TBH A;  3THJ A;  4FCI A;  1WVB A;  4RHK A;  3E8Q A; 
#chains in the Genus database with same CATH topology
 4GWD A;  1C3S A;  5DC6 A;  5EEK A;  1GQ7 A;  5G1A A;  5THS A;  4FCK A;  2GH6 A;  4LY1 A;  3C0Y A;  4RHQ A;  4QA0 A;  2VQO A;  4Q3T A;  4RN0 A;  5IWG A;  5G0H A;  3M1R A;  1HQG A;  4MYL A;  3F06 A;  3THH A;  3Q9B A;  5LI3 A;  1VKG A;  3Q9E A;  3THE A;  3CEV A;  4Q3V A;  3E6K A;  1HQ5 A;  3SFF A;  4CEV A;  5CEV A;  4Q3R A;  3MZ6 A;  5EFK B;  5G13 A;  5D1C A;  4I06 A;  3SFH A;  4G3H A;  5G0I A;  1HQF A;  2VQM A;  5G0Y A;  4GSV A;  4ITY A;  3Q9C A;  4BZ6 A;  1ZPG A;  5FCW A;  5EEF A;  2VQJ A;  4BZ5 A;  5ICN B;  5D1D A;  5HJ9 A;  1WVA A;  1T69 A;  3SJT A;  3LHL A;  4QA5 A;  1P8P A;  1P8Q A;  3NIP A;  5EEN A;  5G0J A;  4CBT A;  1PQ3 A;  4IXU A;  5FUE A;  3MZ3 A;  3GN0 A;  3KV2 A;  4QA6 A;  4IE1 A;  4Q40 A;  1HQX A;  3E9B A;  4RHI A;  4IU0 A;  3LP7 A;  5A2S A;  4Q3Q A;  4IU5 A;  4RHK A;  1C3R A;  5EEI A;  4BKX B;  5THV A;  3E8Z A;  4DZ4 A;  4Q41 A;  2CEV A;  4IU4 A;  1ZZ0 A;  1C3P A;  3SL1 A;  2AEB A;  1P8S A;  5G11 A;  3F0R A;  4QA2 A;  4MYN A;  5G12 A;  4Q3P A;  5EFJ D;  5G1B A;  3MFV A;  4ZUQ A;  4CBY A;  4RHL A;  4FCI A;  3SKK A;  4BZ7 A;  4BZ9 A;  1T4S A;  4QA7 A;  1T4P A;  1CEV A;  4MXR A;  4ZUN A;  4GWC A;  4CQF A;  1T64 A;  1T5G A;  2PLL A;  1P8N A;  3C10 A;  3F07 A;  4IU1 A;  3NIO A;  4BZ8 A;  4Q3U A;  3MZ4 A;  4ZUP A;  3RLA A;  4RHM A;  4IE2 A;  4Q42 A;  2VQQ A;  3EZT A;  4HXQ A;  2V5X A;  2V5W A;  3GMZ A;  3SL0 A;  4GSZ A;  1WOG A;  3MAX A;  3NIQ A;  5DC5 A;  4GSM A;  3MMR A;  2PHO A;  1HQH A;  4RN1 A;  2EIV A;  4QA1 A;  3E6V A;  5DC8 A;  5EFG A;  5HJA A;  1D3V A;  1ZZ1 A;  2A0M A;  5G0G A;  5G1C A;  3RQD A;  2EF5 A;  2PHA A;  4ZUM A;  3MFW A;  3ZNR A;  1P8M A;  4HZE A;  5RLA A;  5DC7 A;  4RLA A;  5EFH A;  5EFN A;  5EEM A;  3MEN A;  2VQV A;  1XFK A;  4RHJ A;  4ZUO A;  1WOI A;  1WOH A;  3C0Z A;  3EWF A;  4IE3 A;  3MZ7 A;  5G0X A;  5G17 A;  3DJ8 A;  4QA4 A;  5THT A;  4QA3 A;  3LP4 A;  1P8R A;  1GQ6 A;  4MYF A;  5EF7 A;  3ZNS A;  1R1O A;  4LXZ A;  4A69 A;  3PZL A;  1T4T A;  4RN2 A;  4Q3R C;  3TF3 A;  1TA1 A;  1T4R A;  1TBL A;  2EF4 A;  4IXV A;  4HWW A;  5BWZ A;  5G10 A;  4ZUR A;  5G3W A;  3EW8 A;  1TBJ A;  1RLA A;  1ZZ3 A;  2VQW G;  2ZAV A;  5IX0 A;  5THU A;  5D1B A;  5EF8 A;  2RLA A;  4Q3S A;  3TH7 A;  4MYK A;  1ZPE A;  2VCG A;  3Q9F A;  1T5F A;  1T67 A;  3F80 A;  1P8O A;  1TBH A;  5EFB D;  3THJ A;  1W22 A;  3MJL A;  1WVB A;  5JI5 A;  3EZP A;  3E8Q A; 
#chains in the Genus database with same CATH homology
 4GWD A;  1GQ7 A;  4FCK A;  4RHQ A;  4Q3T A;  3M1R A;  1HQG A;  4MYL A;  3THH A;  3THE A;  3CEV A;  4Q3V A;  3E6K A;  1HQ5 A;  4CEV A;  5CEV A;  4Q3R A;  4I06 A;  4G3H A;  1HQF A;  4GSV A;  4ITY A;  1ZPG A;  5HJ9 A;  1WVA A;  3SJT A;  3LHL A;  1P8P A;  1P8Q A;  3NIP A;  1PQ3 A;  4IXU A;  3GN0 A;  3KV2 A;  4IE1 A;  4Q40 A;  1HQX A;  3E9B A;  4RHI A;  4IU0 A;  3LP7 A;  4Q3Q A;  4IU5 A;  3E8Z A;  4DZ4 A;  4Q41 A;  2CEV A;  4IU4 A;  3SL1 A;  2AEB A;  1P8S A;  4MYN A;  4Q3P A;  3MFV A;  4RHL A;  3SKK A;  1T4S A;  3MJL A;  1T4P A;  1CEV A;  4MXR A;  4GWC A;  1T5G A;  2PLL A;  1P8N A;  4IU1 A;  3NIO A;  4Q3U A;  3RLA A;  4RHM A;  4IE2 A;  4Q42 A;  4HXQ A;  3GMZ A;  3SL0 A;  4GSZ A;  1WOG A;  3NIQ A;  4GSM A;  3MMR A;  2PHO A;  1HQH A;  2EIV A;  3E6V A;  5HJA A;  1D3V A;  2A0M A;  2EF5 A;  2PHA A;  3MFW A;  1P8M A;  4HZE A;  5RLA A;  4RLA A;  1XFK A;  4RHJ A;  1WOI A;  1WOH A;  4IE3 A;  3DJ8 A;  3LP4 A;  1P8R A;  1GQ6 A;  4MYF A;  3TF3 A;  1R1O A;  3PZL A;  1T4T A;  4Q3R C;  1TA1 A;  1T4R A;  1TBL A;  2EF4 A;  4IXV A;  4HWW A;  1TBJ A;  1RLA A;  2ZAV A;  3TH7 A;  2RLA A;  4Q3S A;  4MYK A;  1ZPE A;  1T5F A;  3F80 A;  1P8O A;  1TBH A;  3THJ A;  4FCI A;  1WVB A;  4RHK A;  3E8Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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