1PPYA

Native precursor of pyruvoyl dependent aspartate decarboxylase
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
118
structure length
117
Chain Sequence
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartate 1-decarboxylase precursor
publication title Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase
pubmed doi rcsb
source organism Escherichia coli
total genus 33
structure length 117
sequence length 118
chains with identical sequence B
ec nomenclature ec 4.1.1.11: Aspartate 1-decarboxylase.
pdb deposition date 2003-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02261 Asp_decarbox Aspartate decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 1ppyA00
1PPYA 1PQEA 1OGYA 1AA6A 1I3QA 1WLFA 3CF2A 5C18A 4KDLA 1IW7D 2EEOB 1G8KA 3GTKA 2C45A 5DYIA 1PYUB 5B6CA 1KQFA 3PLXB 3TIWA 2JIMA 2JA6A 1E61A 3GTJA 2NAPA 4DMRA 2JIOA 2DMRA 2WAQA 1WCMA 2PJHB 2NVYA 1E5VA 3HU3A 2VPWA 2V45A 3GTPA 1K83A 5FTMA 3HKZA 4KODA 5EPPA 2VPYA 1CZ5A 2NYAA 3TM7B 2B63A 1E60A 1S3SA 1AW8B 1CZ4A 1TMOA 1CR5A 2R7ZA 2V3VA 2JA5A 3QQ8A 1G8JA 3GTMA 3FKIA 1PT1A 1VC3B 3GTGA 1PQFA 5C1BA 3IR5A 4KDIA 1YLEA 4AAYA 1Y4ZA 1TWHA 3GTOA 4AONB 1EU1A 2E7ZA 3QWZA 4AZDA 2NVXA 3H0GA 5DYGA 3DMRA 4GA5A 5FTKA 2JIPA 1R7RA 2VPZA 2JIQA 2JIRA 1Y1WA 3IR7A 5T5ID 3O5AA 4CRYG 2VPXA 1Q16A 2JA7A 1DMRA 1FDOA 3IR6A 4CS0A 1R9TA 4QIWA 4KLNA 4RV0A 5FTLA 1I50A 2YU9A 1TWFA 3CQZA 1QDNA 4GA6A 1TWCA 3OUGA 1SFOA 2IV2X 1UHEA 1UHDA 3GTQA 1H0HA 1Y5IA 2VUMA 4KO8A 2Y0SA 1H5NA 2WB1A 5T5MD 1DMSA 1PYQA 3GTLA 1R27A 2R93A 3QC8A 1E18A 5FTNA 4AYBA 2PMZA 3ML1A 1KQGA 1SIWA 1FDIA 4D7ZB 2E2HA 3QQ7A 4AOKB 1PT0A 5GLFA 2KI8A 3HU1A 4C2MA 1PQHA 1TWGA 5FTJA 2E2IA 2R92A 1TWAA 1QCSA 1E32A 1Y1VA 4CRZA 3HU2A
chains in the Genus database with same CATH superfamily
1PPYA 5GLXA 1PQEA 1OGYA 4JP6A 1AA6A 1I3QA 1WLFA 3CF2A 5C18A 4KDLA 2EEOB 1IW7D 1OA7A 1G8KA 3M3GA 2C45A 3GTKA 5DYIA 1YNJD 2G5DA 1WC2A 1BW4A 3SUKA 1PYUB 5B6CA 1KQFA 3PLXB 3TIWA 4JCWA 3X2KA 2JIMA 2JA6A 3D30A 1E61A 2HCZX 4FERA 3GTJA 2NAPA 4DMRA 2JIOA 2DMRA 2WAQA 1WCMA 2PJHB 2NVYA 1E5VA 3HU3A 2VPWA 2V45A 3GTPA 4NOHA 1K83A 5FTMA 3HKZA 4KODA 5EPPA 3X2MA 2VPYA 3X2LA 1CZ5A 2NYAA 2G6GA 3TM7B 2B63A 1E60A 1S3SA 1AW8B 1CZ4A 1TMOA 1CR5A 2GAEA 2V3VA 2R7ZA 2JA5A 3QQ8A 1G8JA 3GTMA 3FKIA 1PT1A 3SULA 1VC3B 3GTGA 1PQFA 2A6ED 5C1BA 3IR5A 4ZM7A 3X2IA 1L8FA 1YLEA 4KDIA 3X2JA 4AAYA 3CZBA 1Y4ZA 1TWHA 3GTOA 1BW3A 3ENGA 4AONB 1EU1A 2E7ZA 3QWZA 4AZDA 2YUJA 1HD5A 2A6HD 2NVXA 3H0GA 5DYGA 2PICA 3DMRA 4GA5A 4JS7A 2O5JD 1OA9A 3X2PA 5FTKA 2JIPA 1R7RA 2VPZA 2AE0X 4JP7A 2JIQA 2JIRA 1Y1WA 3IR7A 5T5ID 3O5AA 3X2OA 4CRYG 2VPXA 1Q16A 2JA7A 1DMRA 1FDOA 3IR6A 4FG2A 4CS0A 2PJJA 1R9TA 4QIWA 4KLNA 4RV0A 5FTLA 2PI8A 1I50A 2YU9A 2BE5D 1TWFA 3CQZA 1QDNA 4GA6A 1TWCA 4L48A 3OUGA 2A69D 1SFOA 2IV2X 5H4UA 3SUJA 1UHEA 1YNND 1UHDA 3X2NA 1SMYD 3GTQA 4FG4A 1H0HA 1Y5IA 2VUMA 4KO8A 2Y0SA 4ENGA 1H5NA 2WB1A 3X2GA 5T5MD 1DMSA 4JJOA 1PYQA 2PNWA 3GTLA 2CW0D 1R27A 2R93A 4FFTA 3QC8A 1E18A 5FTNA 1N10A 2PMZA 1ZYRD 3ML1A 4AYBA 1KQGA 1SIWA 1FDIA 4D7ZB 4AVRA 2E2HA 5GM9A 3QQ7A 3X2HA 4AOKB 1PT0A 5GLFA 2KI8A 1ZC1A 3HU1A 4C2MA 2KQAA 2BH0A 1PQHA 5GLYA 3SUMA 1TWGA 5FTJA 2E2IA 2R92A 1TWAA 1QCSA 1E32A 1Y1VA 4CRZA 3HU2A 2ENGA 2A68D
chains in the Genus database with same CATH topology
1PPYA 1PQEA 1OGYA 1AA6A 1I3QA 1WLFA 3CF2A 5C18A 4KDLA 1IW7D 2EEOB 1G8KA 3GTKA 2C45A 5DYIA 1YNJD 2G5DA 1PYUB 5B6CA 1KQFA 3PLXB 3TIWA 2JIMA 2JA6A 1E61A 3GTJA 2NAPA 4DMRA 2JIOA 2DMRA 2WAQA 1WCMA 2PJHB 2NVYA 1E5VA 3HU3A 2VPWA 2V45A 3GTPA 4NOHA 1K83A 5FTMA 3HKZA 4KODA 5EPPA 2VPYA 1CZ5A 2NYAA 2G6GA 3TM7B 2B63A 1E60A 1S3SA 1AW8B 1CZ4A 1TMOA 1CR5A 2GAEA 2V3VA 2R7ZA 2JA5A 3QQ8A 1G8JA 3GTMA 3FKIA 1PT1A 1VC3B 3GTGA 1PQFA 2A6ED 5C1BA 3IR5A 4KDIA 1YLEA 4AAYA 3CZBA 1Y4ZA 1TWHA 3GTOA 4AONB 1EU1A 2E7ZA 3QWZA 4AZDA 2YUJA 2A6HD 2NVXA 3H0GA 5DYGA 2PICA 3DMRA 4GA5A 2O5JD 5FTKA 2JIPA 1R7RA 2VPZA 2AE0X 2JIQA 2JIRA 1Y1WA 3IR7A 5T5ID 3O5AA 4CRYG 2VPXA 1Q16A 2JA7A 1DMRA 1FDOA 3IR6A 4CS0A 2PJJA 1R9TA 4QIWA 4KLNA 4RV0A 5FTLA 2PI8A 1I50A 2YU9A 2BE5D 1TWFA 3CQZA 1QDNA 4GA6A 1TWCA 3OUGA 2A69D 1SFOA 2IV2X 1UHEA 1YNND 1UHDA 1SMYD 3GTQA 1H0HA 1Y5IA 2VUMA 4KO8A 2Y0SA 1H5NA 2WB1A 5T5MD 1DMSA 1PYQA 2PNWA 3GTLA 2CW0D 1R27A 2R93A 3QC8A 1E18A 5FTNA 4AYBA 2PMZA 1ZYRD 3ML1A 1KQGA 1SIWA 1FDIA 4D7ZB 2E2HA 3QQ7A 4AOKB 1PT0A 5GLFA 2KI8A 1ZC1A 3HU1A 4C2MA 1PQHA 1TWGA 5FTJA 2E2IA 2R92A 1TWAA 1QCSA 1E32A 1Y1VA 4CRZA 3HU2A 2A68D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PPY A;  1PQE A;  1OGY A;  1AA6 A;  1I3Q A;  1WLF A;  3CF2 A;  5C18 A;  4KDL A;  1IW7 D;  2EEO B;  1G8K A;  3GTK A;  2C45 A;  5DYI A;  1PYU B;  5B6C A;  1KQF A;  3PLX B;  3TIW A;  2JIM A;  2JA6 A;  1E61 A;  3GTJ A;  2NAP A;  4DMR A;  2JIO A;  2DMR A;  2WAQ A;  1WCM A;  2PJH B;  2NVY A;  1E5V A;  3HU3 A;  2VPW A;  2V45 A;  3GTP A;  1K83 A;  5FTM A;  3HKZ A;  4KOD A;  5EPP A;  2VPY A;  1CZ5 A;  2NYA A;  3TM7 B;  2B63 A;  1E60 A;  1S3S A;  1AW8 B;  1CZ4 A;  1TMO A;  1CR5 A;  2R7Z A;  2V3V A;  2JA5 A;  3QQ8 A;  1G8J A;  3GTM A;  3FKI A;  1PT1 A;  1VC3 B;  3GTG A;  1PQF A;  5C1B A;  3IR5 A;  4KDI A;  1YLE A;  4AAY A;  1Y4Z A;  1TWH A;  3GTO A;  4AON B;  1EU1 A;  2E7Z A;  3QWZ A;  4AZD A;  2NVX A;  3H0G A;  5DYG A;  3DMR A;  4GA5 A;  5FTK A;  2JIP A;  1R7R A;  2VPZ A;  2JIQ A;  2JIR A;  1Y1W A;  3IR7 A;  5T5I D;  3O5A A;  4CRY G;  2VPX A;  1Q16 A;  2JA7 A;  1DMR A;  1FDO A;  3IR6 A;  4CS0 A;  1R9T A;  4QIW A;  4KLN A;  4RV0 A;  5FTL A;  1I50 A;  2YU9 A;  1TWF A;  3CQZ A;  1QDN A;  4GA6 A;  1TWC A;  3OUG A;  1SFO A;  2IV2 X;  1UHE A;  1UHD A;  3GTQ A;  1H0H A;  1Y5I A;  2VUM A;  4KO8 A;  2Y0S A;  1H5N A;  2WB1 A;  5T5M D;  1DMS A;  1PYQ A;  3GTL A;  1R27 A;  2R93 A;  3QC8 A;  1E18 A;  5FTN A;  4AYB A;  2PMZ A;  3ML1 A;  1KQG A;  1SIW A;  1FDI A;  4D7Z B;  2E2H A;  3QQ7 A;  4AOK B;  1PT0 A;  5GLF A;  2KI8 A;  3HU1 A;  4C2M A;  1PQH A;  1TWG A;  5FTJ A;  2E2I A;  2R92 A;  1TWA A;  1QCS A;  1E32 A;  1Y1V A;  4CRZ A;  3HU2 A; 
#chains in the Genus database with same CATH topology
 1PPY A;  5GLX A;  1PQE A;  1OGY A;  4JP6 A;  1AA6 A;  1I3Q A;  1WLF A;  3CF2 A;  5C18 A;  4KDL A;  2EEO B;  1IW7 D;  1OA7 A;  1G8K A;  3M3G A;  2C45 A;  3GTK A;  5DYI A;  1YNJ D;  2G5D A;  1WC2 A;  1BW4 A;  3SUK A;  1PYU B;  5B6C A;  1KQF A;  3PLX B;  3TIW A;  4JCW A;  3X2K A;  2JIM A;  2JA6 A;  3D30 A;  1E61 A;  2HCZ X;  4FER A;  3GTJ A;  2NAP A;  4DMR A;  2JIO A;  2DMR A;  2WAQ A;  1WCM A;  2PJH B;  2NVY A;  1E5V A;  3HU3 A;  2VPW A;  2V45 A;  3GTP A;  4NOH A;  1K83 A;  5FTM A;  3HKZ A;  4KOD A;  5EPP A;  3X2M A;  2VPY A;  3X2L A;  1CZ5 A;  2NYA A;  2G6G A;  3TM7 B;  2B63 A;  1E60 A;  1S3S A;  1AW8 B;  1CZ4 A;  1TMO A;  1CR5 A;  2GAE A;  2V3V A;  2R7Z A;  2JA5 A;  3QQ8 A;  1G8J A;  3GTM A;  3FKI A;  1PT1 A;  3SUL A;  1VC3 B;  3GTG A;  1PQF A;  2A6E D;  5C1B A;  3IR5 A;  4ZM7 A;  3X2I A;  1L8F A;  1YLE A;  4KDI A;  3X2J A;  4AAY A;  3CZB A;  1Y4Z A;  1TWH A;  3GTO A;  1BW3 A;  3ENG A;  4AON B;  1EU1 A;  2E7Z A;  3QWZ A;  4AZD A;  2YUJ A;  1HD5 A;  2A6H D;  2NVX A;  3H0G A;  5DYG A;  2PIC A;  3DMR A;  4GA5 A;  4JS7 A;  2O5J D;  1OA9 A;  3X2P A;  5FTK A;  2JIP A;  1R7R A;  2VPZ A;  2AE0 X;  4JP7 A;  2JIQ A;  2JIR A;  1Y1W A;  3IR7 A;  5T5I D;  3O5A A;  3X2O A;  4CRY G;  2VPX A;  1Q16 A;  2JA7 A;  1DMR A;  1FDO A;  3IR6 A;  4FG2 A;  4CS0 A;  2PJJ A;  1R9T A;  4QIW A;  4KLN A;  4RV0 A;  5FTL A;  2PI8 A;  1I50 A;  2YU9 A;  2BE5 D;  1TWF A;  3CQZ A;  1QDN A;  4GA6 A;  1TWC A;  4L48 A;  3OUG A;  2A69 D;  1SFO A;  2IV2 X;  5H4U A;  3SUJ A;  1UHE A;  1YNN D;  1UHD A;  3X2N A;  1SMY D;  3GTQ A;  4FG4 A;  1H0H A;  1Y5I A;  2VUM A;  4KO8 A;  2Y0S A;  4ENG A;  1H5N A;  2WB1 A;  3X2G A;  5T5M D;  1DMS A;  4JJO A;  1PYQ A;  2PNW A;  3GTL A;  2CW0 D;  1R27 A;  2R93 A;  4FFT A;  3QC8 A;  1E18 A;  5FTN A;  1N10 A;  2PMZ A;  1ZYR D;  3ML1 A;  4AYB A;  1KQG A;  1SIW A;  1FDI A;  4D7Z B;  4AVR A;  2E2H A;  5GM9 A;  3QQ7 A;  3X2H A;  4AOK B;  1PT0 A;  5GLF A;  2KI8 A;  1ZC1 A;  3HU1 A;  4C2M A;  2KQA A;  2BH0 A;  1PQH A;  5GLY A;  3SUM A;  1TWG A;  5FTJ A;  2E2I A;  2R92 A;  1TWA A;  1QCS A;  1E32 A;  1Y1V A;  4CRZ A;  3HU2 A;  2ENG A;  2A68 D; 
#chains in the Genus database with same CATH homology
 1PPY A;  1PQE A;  1OGY A;  1AA6 A;  1I3Q A;  1WLF A;  3CF2 A;  5C18 A;  4KDL A;  1IW7 D;  2EEO B;  1G8K A;  3GTK A;  2C45 A;  5DYI A;  1YNJ D;  2G5D A;  1PYU B;  5B6C A;  1KQF A;  3PLX B;  3TIW A;  2JIM A;  2JA6 A;  1E61 A;  3GTJ A;  2NAP A;  4DMR A;  2JIO A;  2DMR A;  2WAQ A;  1WCM A;  2PJH B;  2NVY A;  1E5V A;  3HU3 A;  2VPW A;  2V45 A;  3GTP A;  4NOH A;  1K83 A;  5FTM A;  3HKZ A;  4KOD A;  5EPP A;  2VPY A;  1CZ5 A;  2NYA A;  2G6G A;  3TM7 B;  2B63 A;  1E60 A;  1S3S A;  1AW8 B;  1CZ4 A;  1TMO A;  1CR5 A;  2GAE A;  2V3V A;  2R7Z A;  2JA5 A;  3QQ8 A;  1G8J A;  3GTM A;  3FKI A;  1PT1 A;  1VC3 B;  3GTG A;  1PQF A;  2A6E D;  5C1B A;  3IR5 A;  4KDI A;  1YLE A;  4AAY A;  3CZB A;  1Y4Z A;  1TWH A;  3GTO A;  4AON B;  1EU1 A;  2E7Z A;  3QWZ A;  4AZD A;  2YUJ A;  2A6H D;  2NVX A;  3H0G A;  5DYG A;  2PIC A;  3DMR A;  4GA5 A;  2O5J D;  5FTK A;  2JIP A;  1R7R A;  2VPZ A;  2AE0 X;  2JIQ A;  2JIR A;  1Y1W A;  3IR7 A;  5T5I D;  3O5A A;  4CRY G;  2VPX A;  1Q16 A;  2JA7 A;  1DMR A;  1FDO A;  3IR6 A;  4CS0 A;  2PJJ A;  1R9T A;  4QIW A;  4KLN A;  4RV0 A;  5FTL A;  2PI8 A;  1I50 A;  2YU9 A;  2BE5 D;  1TWF A;  3CQZ A;  1QDN A;  4GA6 A;  1TWC A;  3OUG A;  2A69 D;  1SFO A;  2IV2 X;  1UHE A;  1YNN D;  1UHD A;  1SMY D;  3GTQ A;  1H0H A;  1Y5I A;  2VUM A;  4KO8 A;  2Y0S A;  1H5N A;  2WB1 A;  5T5M D;  1DMS A;  1PYQ A;  2PNW A;  3GTL A;  2CW0 D;  1R27 A;  2R93 A;  3QC8 A;  1E18 A;  5FTN A;  4AYB A;  2PMZ A;  1ZYR D;  3ML1 A;  1KQG A;  1SIW A;  1FDI A;  4D7Z B;  2E2H A;  3QQ7 A;  4AOK B;  1PT0 A;  5GLF A;  2KI8 A;  1ZC1 A;  3HU1 A;  4C2M A;  1PQH A;  1TWG A;  5FTJ A;  2E2I A;  2R92 A;  1TWA A;  1QCS A;  1E32 A;  1Y1V A;  4CRZ A;  3HU2 A;  2A68 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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