1PSIA

Intact recombined alpha1-antitrypsin mutant phe 51 to leu
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
372
structure length
371
Chain Sequence
FNKITPNLAEFAFSLYRQLAHQSNSTNILFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Serine protease inhibitor
molecule keywords ALPHA=1=-ANTITRYPSIN
publication title Inhibitory conformation of the reactive loop of alpha 1-antitrypsin.
pubmed doi rcsb
source organism Homo sapiens
total genus 105
structure length 371
sequence length 372
ec nomenclature
pdb deposition date 1996-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 1psiA01
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 1psiA02
4G8OA 1OC0A 1ATUA 2BEHL 4EB1L 2ANTI 4DTEA 3VVJA 2ZV6A 1LK6I 2WXZA 1HLEA 5CE0A 3F1SA 1JMOA 3PZFA 2H4RA 1JMJA 3ZHAA 1XQGA 4PYWA 1OVAC 1XU8A 2ACHA 3LW2A 4AFXA 3EVJI 1BR8I 4X30A 3CWMA 1F0CA 4DY0A 4IC0A 3DY0A 4RO9A 1R1LI 3Q02A 5EI0A 3F5NA 2R9YA 4AU2A 2WXYC 3LE2A 4DY7C 4RSQA 1JRRA 5HGCA 1LJ5A 2QUGA 3PB1I 1IMVA 2WY0C 4Y3KA 2OAYA 1SNGA 1D5SA 3NDAA 4P0OA 1T1FA 9PAIA 2VH4A 1ATHA 1OYHL 1DZGI 1DZHI 1BY7A 1JTIA 2GD4C 5CDZA 1WZ9A 3Q03A 1EZXA 2XN5A 4AQHA 1B3KA 4G8RA 4ROBA 4YIAA 2B4XI 2HIJI 2ARQA 4R9IA 4Y40A 3R4LA 1DB2A 1IZ2A 2WY1A 5INWA 1MTPA 5C98A 4CAAA 4AJUA 3DRMA 2HI9A 3DRUA 1QMBA 1UHGA 2XN6A 3NE4A 4KDSA 2ZNHA 3F02A 1DVMA 2RIVA 4C49A 1E03I 2D26A 2OL2A 2BEHI 4EB1I 5CDXA 1OVAA 2PEFA 2DUTA 4ROAA 2HIJL 2WXZC 4AU3A 1LQ8A 2WXXA 2VDXA 1OVAB 4AU3B 3OZQA 1OO8A 7APIA 5IO1A 2VDYA 4ZK0A 3T1PA 4GA7A 1JVQI 3CWLA 4AU4A 2H4PA 1JJOC 3CVMA 1QLPA 4ZK3A 1ATTA 1M93B 1SR5A 4AJTA 2CEOA 4IF8A 8APIA 3B9FI 1E04I 1SEKA 2RIWA 2V95A 2PEEA 1DZGL 1K9OI 3EOXA 1HP7A 1DZHL 4C41A 5BRRI 1AS4A 3NDFA 1E05I 3CAAA 1YXAA 4BB2A 1DVNA 2ARRA 3H5CA 3KCGI 2B4XL 2WXWA 3STOA 2H4QA 1OPHA 1C5GA 1PSIA 1KCTA 2B5TI 9APIA 1OYHI 1XQJA 3FGQA 3UT3A 3NDDA 1A7CA 1AZXI 2XN7A 1C8OA 3DLWA 1ANTI 1TB6I 2XN3A 1QMNA 4P0FA 1NQ9I
chains in the Genus database with same CATH superfamily
4G8OA 1OC0A 1ATUA 2BEHL 4EB1L 2ANTI 4DTEA 3VVJA 2ZV6A 1LK6I 2WXZA 1HLEA 5CE0A 3F1SA 1JMOA 3PZFA 2H4RA 1JMJA 3ZHAA 1XQGA 4PYWA 1OVAC 1XU8A 2ACHA 3LW2A 4AFXA 3EVJI 1BR8I 4X30A 3CWMA 1F0CA 4DY0A 4IC0A 3DY0A 4RO9A 1R1LI 3Q02A 5EI0A 3F5NA 2R9YA 4AU2A 2WXYC 3LE2A 4DY7C 4RSQA 1JRRA 5HGCA 1LJ5A 2QUGA 3PB1I 1IMVA 2WY0C 4Y3KA 2OAYA 1SNGA 1D5SA 3NDAA 4P0OA 1T1FA 9PAIA 2VH4A 1ATHA 1OYHL 1DZGI 1DZHI 1BY7A 1JTIA 2GD4C 5CDZA 1WZ9A 3Q03A 1EZXA 2XN5A 4AQHA 1B3KA 4G8RA 4ROBA 4YIAA 2B4XI 2HIJI 2ARQA 4R9IA 4Y40A 3R4LA 1DB2A 1IZ2A 2WY1A 5INWA 1MTPA 5C98A 4CAAA 4AJUA 3DRMA 2HI9A 3DRUA 1QMBA 1UHGA 2XN6A 3NE4A 4KDSA 2ZNHA 3F02A 1DVMA 2RIVA 4C49A 1E03I 2D26A 2OL2A 2BEHI 4EB1I 5CDXA 1OVAA 2PEFA 2DUTA 4ROAA 2HIJL 2WXZC 4AU3A 1LQ8A 2WXXA 2VDXA 1OVAB 4AU3B 3OZQA 1OO8A 7APIA 5IO1A 2VDYA 4ZK0A 3T1PA 4GA7A 1JVQI 3CWLA 4AU4A 2H4PA 1JJOC 3CVMA 1QLPA 4ZK3A 1ATTA 1M93B 1SR5A 4AJTA 2CEOA 4IF8A 8APIA 3B9FI 1E04I 1SEKA 2RIWA 2V95A 2PEEA 1DZGL 1K9OI 3EOXA 1HP7A 1DZHL 4C41A 5BRRI 1AS4A 3NDFA 1E05I 3CAAA 1YXAA 4BB2A 1DVNA 2ARRA 3H5CA 3KCGI 2B4XL 2WXWA 3STOA 2H4QA 1OPHA 1C5GA 1PSIA 1KCTA 2B5TI 9APIA 1OYHI 1XQJA 3FGQA 3UT3A 3NDDA 1A7CA 1AZXI 2XN7A 1C8OA 3DLWA 1ANTI 1TB6I 2XN3A 1QMNA 4P0FA 1NQ9I
chains in the Genus database with same CATH topology
4G8OA 1OC0A 1ATUA 2BEHL 4EB1L 2ANTI 4DTEA 3VVJA 2ZV6A 1LK6I 2WXZA 1HLEA 5CE0A 3F1SA 1JMOA 3PZFA 2H4RA 1JMJA 3ZHAA 1XQGA 4PYWA 1OVAC 1XU8A 2ACHA 3LW2A 4AFXA 3EVJI 1BR8I 4X30A 3CWMA 1F0CA 4DY0A 4IC0A 3DY0A 4RO9A 1R1LI 3Q02A 5EI0A 3F5NA 2R9YA 4AU2A 2WXYC 3LE2A 4DY7C 4RSQA 1JRRA 5HGCA 1LJ5A 2QUGA 3PB1I 1IMVA 2WY0C 4Y3KA 2OAYA 1SNGA 1D5SA 3NDAA 4P0OA 1T1FA 9PAIA 2VH4A 1ATHA 1OYHL 1DZGI 1DZHI 1BY7A 1JTIA 2GD4C 5CDZA 1WZ9A 3Q03A 1EZXA 2XN5A 4AQHA 1B3KA 4G8RA 4ROBA 4YIAA 2B4XI 2HIJI 2ARQA 4R9IA 4Y40A 3R4LA 1DB2A 1IZ2A 2WY1A 5INWA 1MTPA 5C98A 4CAAA 4AJUA 3DRMA 2HI9A 3DRUA 1QMBA 1UHGA 2XN6A 3NE4A 4KDSA 2ZNHA 3F02A 1DVMA 2RIVA 4C49A 1E03I 2D26A 2OL2A 2BEHI 4EB1I 5CDXA 1OVAA 2PEFA 2DUTA 4ROAA 2HIJL 2WXZC 4AU3A 1LQ8A 2WXXA 2VDXA 1OVAB 4AU3B 3OZQA 1OO8A 7APIA 5IO1A 2VDYA 4ZK0A 3T1PA 4GA7A 1JVQI 3CWLA 4AU4A 2H4PA 1JJOC 3CVMA 1QLPA 4ZK3A 1ATTA 1M93B 1SR5A 4AJTA 2CEOA 4IF8A 8APIA 3B9FI 1E04I 1SEKA 2RIWA 2V95A 2PEEA 1DZGL 1K9OI 3EOXA 1HP7A 1DZHL 4C41A 5BRRI 1AS4A 3NDFA 1E05I 3CAAA 1YXAA 4BB2A 1DVNA 2ARRA 3H5CA 3KCGI 2B4XL 2WXWA 3STOA 2H4QA 1OPHA 1C5GA 1PSIA 1KCTA 2B5TI 9APIA 1OYHI 1XQJA 3FGQA 3UT3A 3NDDA 1A7CA 1AZXI 2XN7A 1C8OA 3DLWA 1ANTI 1TB6I 2XN3A 1QMNA 4P0FA 1NQ9I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G8O A;  1OC0 A;  1ATU A;  2BEH L;  4EB1 L;  2ANT I;  4DTE A;  3VVJ A;  2ZV6 A;  1LK6 I;  2WXZ A;  1HLE A;  5CE0 A;  3F1S A;  1JMO A;  3PZF A;  2H4R A;  1JMJ A;  3ZHA A;  1XQG A;  4PYW A;  1OVA C;  1XU8 A;  2ACH A;  3LW2 A;  4AFX A;  3EVJ I;  1BR8 I;  4X30 A;  3CWM A;  1F0C A;  4DY0 A;  4IC0 A;  3DY0 A;  4RO9 A;  1R1L I;  3Q02 A;  5EI0 A;  3F5N A;  2R9Y A;  4AU2 A;  2WXY C;  3LE2 A;  4DY7 C;  4RSQ A;  1JRR A;  5HGC A;  1LJ5 A;  2QUG A;  3PB1 I;  1IMV A;  2WY0 C;  4Y3K A;  2OAY A;  1SNG A;  1D5S A;  3NDA A;  4P0O A;  1T1F A;  9PAI A;  2VH4 A;  1ATH A;  1OYH L;  1DZG I;  1DZH I;  1BY7 A;  1JTI A;  2GD4 C;  5CDZ A;  1WZ9 A;  3Q03 A;  1EZX A;  2XN5 A;  4AQH A;  1B3K A;  4G8R A;  4ROB A;  4YIA A;  2B4X I;  2HIJ I;  2ARQ A;  4R9I A;  4Y40 A;  3R4L A;  1DB2 A;  1IZ2 A;  2WY1 A;  5INW A;  1MTP A;  5C98 A;  4CAA A;  4AJU A;  3DRM A;  2HI9 A;  3DRU A;  1QMB A;  1UHG A;  2XN6 A;  3NE4 A;  4KDS A;  2ZNH A;  3F02 A;  1DVM A;  2RIV A;  4C49 A;  1E03 I;  2D26 A;  2OL2 A;  2BEH I;  4EB1 I;  5CDX A;  1OVA A;  2PEF A;  2DUT A;  4ROA A;  2HIJ L;  2WXZ C;  4AU3 A;  1LQ8 A;  2WXX A;  2VDX A;  1OVA B;  4AU3 B;  3OZQ A;  1OO8 A;  7API A;  5IO1 A;  2VDY A;  4ZK0 A;  3T1P A;  4GA7 A;  1JVQ I;  3CWL A;  4AU4 A;  2H4P A;  1JJO C;  3CVM A;  1QLP A;  4ZK3 A;  1ATT A;  1M93 B;  1SR5 A;  4AJT A;  2CEO A;  4IF8 A;  8API A;  3B9F I;  1E04 I;  1SEK A;  2RIW A;  2V95 A;  2PEE A;  1DZG L;  1K9O I;  3EOX A;  1HP7 A;  1DZH L;  4C41 A;  5BRR I;  1AS4 A;  3NDF A;  1E05 I;  3CAA A;  1YXA A;  4BB2 A;  1DVN A;  2ARR A;  3H5C A;  3KCG I;  2B4X L;  2WXW A;  3STO A;  2H4Q A;  1OPH A;  1C5G A;  1PSI A;  1KCT A;  2B5T I;  9API A;  1OYH I;  1XQJ A;  3FGQ A;  3UT3 A;  3NDD A;  1A7C A;  1AZX I;  2XN7 A;  1C8O A;  3DLW A;  1ANT I;  1TB6 I;  2XN3 A;  1QMN A;  4P0F A;  1NQ9 I; 
#chains in the Genus database with same CATH topology
 4G8O A;  1OC0 A;  1ATU A;  2BEH L;  4EB1 L;  2ANT I;  4DTE A;  3VVJ A;  2ZV6 A;  1LK6 I;  2WXZ A;  1HLE A;  5CE0 A;  3F1S A;  1JMO A;  3PZF A;  2H4R A;  1JMJ A;  3ZHA A;  1XQG A;  4PYW A;  1OVA C;  1XU8 A;  2ACH A;  3LW2 A;  4AFX A;  3EVJ I;  1BR8 I;  4X30 A;  3CWM A;  1F0C A;  4DY0 A;  4IC0 A;  3DY0 A;  4RO9 A;  1R1L I;  3Q02 A;  5EI0 A;  3F5N A;  2R9Y A;  4AU2 A;  2WXY C;  3LE2 A;  4DY7 C;  4RSQ A;  1JRR A;  5HGC A;  1LJ5 A;  2QUG A;  3PB1 I;  1IMV A;  2WY0 C;  4Y3K A;  2OAY A;  1SNG A;  1D5S A;  3NDA A;  4P0O A;  1T1F A;  9PAI A;  2VH4 A;  1ATH A;  1OYH L;  1DZG I;  1DZH I;  1BY7 A;  1JTI A;  2GD4 C;  5CDZ A;  1WZ9 A;  3Q03 A;  1EZX A;  2XN5 A;  4AQH A;  1B3K A;  4G8R A;  4ROB A;  4YIA A;  2B4X I;  2HIJ I;  2ARQ A;  4R9I A;  4Y40 A;  3R4L A;  1DB2 A;  1IZ2 A;  2WY1 A;  5INW A;  1MTP A;  5C98 A;  4CAA A;  4AJU A;  3DRM A;  2HI9 A;  3DRU A;  1QMB A;  1UHG A;  2XN6 A;  3NE4 A;  4KDS A;  2ZNH A;  3F02 A;  1DVM A;  2RIV A;  4C49 A;  1E03 I;  2D26 A;  2OL2 A;  2BEH I;  4EB1 I;  5CDX A;  1OVA A;  2PEF A;  2DUT A;  4ROA A;  2HIJ L;  2WXZ C;  4AU3 A;  1LQ8 A;  2WXX A;  2VDX A;  1OVA B;  4AU3 B;  3OZQ A;  1OO8 A;  7API A;  5IO1 A;  2VDY A;  4ZK0 A;  3T1P A;  4GA7 A;  1JVQ I;  3CWL A;  4AU4 A;  2H4P A;  1JJO C;  3CVM A;  1QLP A;  4ZK3 A;  1ATT A;  1M93 B;  1SR5 A;  4AJT A;  2CEO A;  4IF8 A;  8API A;  3B9F I;  1E04 I;  1SEK A;  2RIW A;  2V95 A;  2PEE A;  1DZG L;  1K9O I;  3EOX A;  1HP7 A;  1DZH L;  4C41 A;  5BRR I;  1AS4 A;  3NDF A;  1E05 I;  3CAA A;  1YXA A;  4BB2 A;  1DVN A;  2ARR A;  3H5C A;  3KCG I;  2B4X L;  2WXW A;  3STO A;  2H4Q A;  1OPH A;  1C5G A;  1PSI A;  1KCT A;  2B5T I;  9API A;  1OYH I;  1XQJ A;  3FGQ A;  3UT3 A;  3NDD A;  1A7C A;  1AZX I;  2XN7 A;  1C8O A;  3DLW A;  1ANT I;  1TB6 I;  2XN3 A;  1QMN A;  4P0F A;  1NQ9 I; 
#chains in the Genus database with same CATH homology
 4G8O A;  1OC0 A;  1ATU A;  2BEH L;  4EB1 L;  2ANT I;  4DTE A;  3VVJ A;  2ZV6 A;  1LK6 I;  2WXZ A;  1HLE A;  5CE0 A;  3F1S A;  1JMO A;  3PZF A;  2H4R A;  1JMJ A;  3ZHA A;  1XQG A;  4PYW A;  1OVA C;  1XU8 A;  2ACH A;  3LW2 A;  4AFX A;  3EVJ I;  1BR8 I;  4X30 A;  3CWM A;  1F0C A;  4DY0 A;  4IC0 A;  3DY0 A;  4RO9 A;  1R1L I;  3Q02 A;  5EI0 A;  3F5N A;  2R9Y A;  4AU2 A;  2WXY C;  3LE2 A;  4DY7 C;  4RSQ A;  1JRR A;  5HGC A;  1LJ5 A;  2QUG A;  3PB1 I;  1IMV A;  2WY0 C;  4Y3K A;  2OAY A;  1SNG A;  1D5S A;  3NDA A;  4P0O A;  1T1F A;  9PAI A;  2VH4 A;  1ATH A;  1OYH L;  1DZG I;  1DZH I;  1BY7 A;  1JTI A;  2GD4 C;  5CDZ A;  1WZ9 A;  3Q03 A;  1EZX A;  2XN5 A;  4AQH A;  1B3K A;  4G8R A;  4ROB A;  4YIA A;  2B4X I;  2HIJ I;  2ARQ A;  4R9I A;  4Y40 A;  3R4L A;  1DB2 A;  1IZ2 A;  2WY1 A;  5INW A;  1MTP A;  5C98 A;  4CAA A;  4AJU A;  3DRM A;  2HI9 A;  3DRU A;  1QMB A;  1UHG A;  2XN6 A;  3NE4 A;  4KDS A;  2ZNH A;  3F02 A;  1DVM A;  2RIV A;  4C49 A;  1E03 I;  2D26 A;  2OL2 A;  2BEH I;  4EB1 I;  5CDX A;  1OVA A;  2PEF A;  2DUT A;  4ROA A;  2HIJ L;  2WXZ C;  4AU3 A;  1LQ8 A;  2WXX A;  2VDX A;  1OVA B;  4AU3 B;  3OZQ A;  1OO8 A;  7API A;  5IO1 A;  2VDY A;  4ZK0 A;  3T1P A;  4GA7 A;  1JVQ I;  3CWL A;  4AU4 A;  2H4P A;  1JJO C;  3CVM A;  1QLP A;  4ZK3 A;  1ATT A;  1M93 B;  1SR5 A;  4AJT A;  2CEO A;  4IF8 A;  8API A;  3B9F I;  1E04 I;  1SEK A;  2RIW A;  2V95 A;  2PEE A;  1DZG L;  1K9O I;  3EOX A;  1HP7 A;  1DZH L;  4C41 A;  5BRR I;  1AS4 A;  3NDF A;  1E05 I;  3CAA A;  1YXA A;  4BB2 A;  1DVN A;  2ARR A;  3H5C A;  3KCG I;  2B4X L;  2WXW A;  3STO A;  2H4Q A;  1OPH A;  1C5G A;  1PSI A;  1KCT A;  2B5T I;  9API A;  1OYH I;  1XQJ A;  3FGQ A;  3UT3 A;  3NDD A;  1A7C A;  1AZX I;  2XN7 A;  1C8O A;  3DLW A;  1ANT I;  1TB6 I;  2XN3 A;  1QMN A;  4P0F A;  1NQ9 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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